Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8247179.1

Orthogroup ID

OG0009488

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 717

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8247179.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 559 bp

ctgccctacccttcgtgtgagatcattgacaagttagagtcgcttgatgaagaagatgttgtaggatcaggaggatttggcactgtgtaccgaatggtaatgaatgattgtggaacatttgctgttaaaagaattgacagaagtcgggaaggatcagatcaaggttttgagagggagttagagatcttgggtagcattaagcatataaacctagttaacttgcgaggctactgcaggcttcctacttcaaagcttcttatatatgattatgtagctatgggaagcttagatgatttcttgcatggagattggctggaagagcgacctctgaattggagtgtgcgtttaagaatagctctcggttctgctagagggatagcatacctgcaccatgattgctgtccaaagatagtgcaccgtgacataaaatccagcaacattttgcttgatgaaaacttggagccccatgtctctgactttggtcttgcaaagcttttggttgatgaggatgcccatgttaccacagtggttgctggcacttttggctatcttgcaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

186

Amino Acids

20.82

Weight (kDa)

5.09

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62710 AT5G62710
fragaria_vesca	FvH4_5g15570 FvH4_5g15570
malus_domestica	MD06G1187300.v1.1 MD14G1193700.v1.1
prunus_persica	Prupe.5G185500_v2.0.a1 Prupe.5G185500_v2.0.a1 Prupe.5G185500_v2.0.a1
pyrus_communis	pycom06g16630 pycom14g16110
rosa_chinensis	RchiOBHm_Chr7g0180531
rosa_laevigata	RLG00000005260
rosa_multiflora	Rmu_co8247179.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272820
rosa_rugosa	Rorug06G0433200 Rorug06G0433200
rosa_samantha	Rh7AG034500 Rh7BG034500 Rh7CG036200 Rh7DG034800
rosa_wichuraiana	Rw7G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AclWI	GGATC	2 cut(s)	73, 160
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	249
AluBI	AGCT	5 cut(s)	253, 275, 285, 356, 493
AluI	AGCT	5 cut(s)	253, 275, 285, 356, 493
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	475
Alw44I	GTGCAC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	73, 160
ApaLI	GTGCAC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	417
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	2 cut(s)	212, 369
BfmI	CTRYAG	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	393
BglII	AGATCT	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	462
BmsI	GCATC	1 cut(s)	499
BoxI	GACNNNNGTC	2 cut(s)	141, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
BseGI	GGATG	1 cut(s)	514
BseSI	GKGCMC	1 cut(s)	417
BsgI	GTGCAG	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	417
BsmAI	GTCTC	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	417, 465
Bsp143I	GATC	5 cut(s)	21, 65, 152, 157, 183
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	236
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	73, 160
BspQI	GCTCTTC	1 cut(s)	312
BssMI	GATC	5 cut(s)	21, 65, 152, 157, 183
Bst4CI	ACNGT	3 cut(s)	85, 419, 526
Bst6I	CTCTTC	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	236, 535
BstDEI	CTNAG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	5 cut(s)	24, 68, 155, 160, 186
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	5 cut(s)	21, 65, 152, 157, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 543
BstPAI	GACNNNNGTC	2 cut(s)	141, 480
BstSFI	CTRYAG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	81, 531
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	236, 535
Csp6I	GTAC	1 cut(s)	88
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	4 cut(s)	302, 392, 467, 515
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	5 cut(s)	23, 67, 154, 159, 185
DpnII	GATC	5 cut(s)	21, 65, 152, 157, 183
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	4 cut(s)	305, 395, 470, 518
FatI	CATG	4 cut(s)	301, 391, 466, 514
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	212, 369
Hin1II	CATG	4 cut(s)	305, 395, 470, 518
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	3 cut(s)	251, 283, 491
HinfI	GANTC	1 cut(s)	38
HpaI	GTTAAC	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	88, 217, 415
Hpy188I	TCNGA	3 cut(s)	157, 330, 475
Hpy188III	TCNNGA	2 cut(s)	69, 146
Hpy8I	GTNNAC	3 cut(s)	88, 217, 415
HpyAV	CCTTC	2 cut(s)	21, 143
HpyCH4III	ACNGT	3 cut(s)	85, 419, 526
HpyCH4V	TGCA	6 cut(s)	234, 301, 388, 415, 488, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 543
HpyF3I	CTNAG	1 cut(s)	286
Hsp92II	CATG	4 cut(s)	305, 395, 470, 518
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	21, 65, 152, 157, 183
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	6 cut(s)	54, 220, 299, 398, 445, 519
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	2 cut(s)	212, 369
MaeIII	GTNAC	2 cut(s)	419, 517
MalI	GATC	5 cut(s)	23, 67, 154, 159, 185
MboI	GATC	5 cut(s)	21, 65, 152, 157, 183
MboII	GAAGA	3 cut(s)	62, 65, 329
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	2 cut(s)	417, 465
MluCI	AATT	2 cut(s)	132, 331
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	65, 165, 218, 336, 365, 499
MseI	TTAA	4 cut(s)	126, 198, 216, 347
MwoI	GCNNNNNNNGC	2 cut(s)	319, 543
NdeII	GATC	5 cut(s)	21, 65, 152, 157, 183
NlaIII	CATG	4 cut(s)	305, 395, 470, 518
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PshAI	GACNNNNGTC	2 cut(s)	141, 480
PspN4I	GGNNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	4 cut(s)	126, 198, 216, 347
Sau3AI	GATC	5 cut(s)	21, 65, 152, 157, 183
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	417, 465
SetI	ASST	9 cut(s)	166, 213, 255, 277, 287, 328, 358, 387, 495
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	132, 331
SspMI	CTAG	2 cut(s)	212, 369
TaaI	ACNGT	3 cut(s)	85, 419, 526
TasI	AATT	2 cut(s)	132, 331
Tru1I	TTAA	4 cut(s)	126, 198, 216, 347
Tru9I	TTAA	4 cut(s)	126, 198, 216, 347
TscAI	CASTG	2 cut(s)	88, 531
TseFI	GTSAC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	63, 116, 465
TspRI	CASTG	2 cut(s)	88, 531
VneI	GTGCAC	1 cut(s)	413
XspI	CTAG	2 cut(s)	212, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.