Rh7CG036200

LRR receptor-like serine threonine-protein kinase FEI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009488
Physical Location & Seq
Forward (+)
2474453 .. 2478600
4148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG036200.1

Sequence Viewer

Length: 1743 bp
ATGTACTTTTTTGCACTAGGTTTCGTACTGCTGGAAATGAAAAGCGTTTTGAATGACAGTAGGAACATGCTTAGTAACTGGCAGGATTCTGATGAATCACCTTGTAATTGGACTGGTATTACTTGCCATCCTCAGGACCAAAGAGTCAGCGCTATTAACCTACCCTATATGCAACTAGGAGGGACTATATCTCCCAGCATTGGCAAACTTAGTAGATTGCAGAGACTGGCTCTTCACCAGAACAGCTTACATGGATTCATTCCTAATGAAATTACCAGTTGCACTGAGCTTAGAGCTTTGTACTTGAGGGCTAATTATCTACAGGGAGGTATACCATCAAATATTGGAAACCTTTCTTCTCTCACCATATTGGATATATCAAGCAATTTATTAAAGGGTGCTATACCTTCATCTATTGGCCGCCTATCACGATTGCGCTCTCTGAACTTGTCCACTAACTTCTTCTCTGGGGAAATCCCAGACGTTGGAGTTCTGAGCAACTTTGGGAATAAGTCGTTTATTGGGAATCTTGATCTTTGTGGCCAACAAGTGCACAAGCCCTGTCGAACCTCACTGGGATTTCCTGCTGTATTGCCACATGCGGCGAGTGATGAAGCAGCTGTCCCTCCCAAGCGATCTTCACATTACATTAAGGGATTGCTTATTGGTGTCATGGCGACCCTGGCATTTGCACTTTTCATTCTCCTTGGCTTCCTTTGGGCTCGGTTACTATCGAAAAAGGAAAGAGTGGCCAAGAAATATACAGAAGTTACGAAGCAAGTAAATCAAGAAGCAGGCACAAAACTCATCACTTTCCATGGAGATCTGCCCTACCCTTCGTGTGAGATCATTGACAAGTTAGAGTCGCTTGATGAAGAAGATGTTGTAGGATCAGGAGGATTTGGCACTGTGTACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTTAAAAGAATTGACAGAAGTCGGGAAGGATCAGATCAAGGTTTTGAGAGGGAGTTAGAGATCTTGGGTAGCATTAAGCATATAAACCTAGTTAACTTGCGAGGCTACTGCAGGCTTCCTACTTCAAAGCTTCTTATATATGATTATGTAGCTATGGGAAGCTTAGATGATTTCTTGCATGGAGATGGGCTGGAAGAGCGACCTCTGAATTGGAGTGTGCGTTTAAGAATAGCTCTCGGTTCTGCTAGAGGGATAGCATACCTGCACCATGATTGCTGTCCAAAGATAGTGCACCGTGACATAAAATCCAGCAACATTTTGCTTGATGAAAACTTGGAGCCCCATGTCTCTGACTTTGGTCTTGCAAAGCTTTTGGTTGATGAGGATGCCCATGTTACCACAGTGGTTGCTGGCACTTTTGGCTATCTTGCACCAGAGTATTTGCAGAGCGGGAGAGCGACACAAAAGTCAGATGTATATAGCTTTGGAGTTCTTTTGCTTGAGCTTGTGACTGGAAAGAGACCTACTGATCCGACATTTGTCAAGAGAGGCTTAAATGTAGTTGGTTGGATGAACACGCTATTGAGAGAGAACCGATTGAAAGATTTAGTTGACAAGCGGTGCAGAGATGCAGATCCTGAAAGTCTGGAAGCAATTCTTGAAATAGCTGCAAGGTGCACGGATGCGAGCCCAGATGATAGGCCATCAATGAATCAGGTATTGCAGTTGCTAGAGCAAGAAGTCATGTCACCTTGCCCAAGTGATTTCTACGACTCCCACTCAGATCATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

580

Amino Acids

64.28

Weight (kDa)

6.08

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 9 - 42 1.1e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 60 - 151 3.1e-07 Leucine-rich repeat region
LRR_8 PF13855 97 - 153 1.3e-07 Leucine rich repeat
Pkinase PF00069 292 - 558 4.1e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 293 - 559 1.6e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 143, 1414
Acc36I ACCTGC 1 cut(s) 1218
AccB7I CCANNNNNTGG 1 cut(s) 485
AccBSI CCGCTC 1 cut(s) 1398
AccI GTMKAC 1 cut(s) 331
AciI CCGC 4 cut(s) 421, 602, 1398, 1567
AclWI GGATC 4 cut(s) 898, 985, 1472, 1577
AcoI YGGCCR 3 cut(s) 418, 541, 750
AfaI GTAC 4 cut(s) 5, 27, 302, 914
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 3 cut(s) 133, 200, 485
AgsI TTSAA 4 cut(s) 52, 1074, 1549, 1610
AjnI CCWGG 1 cut(s) 681
Alw21I GWGCWC 3 cut(s) 555, 1242, 1628
Alw26I GTCTC 3 cut(s) 217, 1300, 1462
Alw44I GTGCAC 3 cut(s) 551, 1238, 1624
AlwI GGATC 4 cut(s) 898, 985, 1472, 1577
AlwNI CAGNNNCTG 2 cut(s) 226, 1586
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 4 cut(s) 418, 541, 750, 1649
ApaLI GTGCAC 3 cut(s) 551, 1238, 1624
ApeKI GCWGC 2 cut(s) 617, 1616
Asp700I GAANNNNTTC 2 cut(s) 352, 1602
AspLEI GCGC 2 cut(s) 152, 438
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 4 cut(s) 90, 227, 355, 1689
AvaII GGWCC 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 3 cut(s) 555, 1242, 1628
BalI TGGCCA 2 cut(s) 543, 752
BanII GRGCYC 3 cut(s) 724, 1290, 1640
Bbv12I GWGCWC 3 cut(s) 555, 1242, 1628
BbvI GCAGC 2 cut(s) 629, 1603
BccI CCATC 4 cut(s) 135, 343, 1127, 1660
BcgI CGANNNNNNTGC 2 cut(s) 1038, 1072
BciT130I CCWGG 1 cut(s) 683
BcoDI GTCTC 3 cut(s) 217, 1300, 1462
BfaI CTAG 5 cut(s) 17, 176, 1037, 1194, 1679
BfmI CTRYAG 2 cut(s) 320, 1057
BfoI RGCGCY 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 1218
BglII AGATCT 2 cut(s) 823, 1008
BisI GCNGC 4 cut(s) 421, 603, 618, 1617
BlsI GCNGC 4 cut(s) 422, 604, 619, 1618
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 1287
BmrFI CCNGG 1 cut(s) 683
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 3 cut(s) 1324, 1567, 1621
BmuI ACTGGG 1 cut(s) 584
BoxI GACNNNNGTC 3 cut(s) 966, 1305, 1487
BplI GAGNNNNNCTC 2 cut(s) 214, 246
BpuEI CTTGAG 2 cut(s) 325, 1469
BsaBI GATNNNNATC 1 cut(s) 1581
BsaI GGTCTC 1 cut(s) 1462
BsaJI CCNNGG 3 cut(s) 681, 706, 817
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 1153, 1183
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 200, 485
Bse1I ACTGG 6 cut(s) 83, 118, 231, 276, 579, 1465
Bse21I CCTNAGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 1581
BseBI CCWGG 1 cut(s) 683
BseDI CCNNGG 3 cut(s) 681, 706, 817
BseGI GGATG 4 cut(s) 127, 1339, 1524, 1636
BseJI GATNNNNATC 1 cut(s) 1581
BseLI CCNNNNNNNGG 3 cut(s) 133, 200, 485
BseMII CTCAG 4 cut(s) 146, 276, 485, 1743
BseNI ACTGG 6 cut(s) 83, 118, 231, 276, 579, 1465
BseSI GKGCMC 3 cut(s) 555, 1242, 1628
BseXI GCAGC 2 cut(s) 629, 1603
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 2 cut(s) 1196, 1591
BshFI GGCC 4 cut(s) 420, 543, 752, 1651
BsiHKAI GWGCWC 3 cut(s) 555, 1242, 1628
BslFI GGGAC 2 cut(s) 196, 608
BslI CCNNNNNNNGG 3 cut(s) 133, 200, 485
BsmAI GTCTC 3 cut(s) 217, 1300, 1462
BsmFI GGGAC 2 cut(s) 196, 608
BsnI GGCC 4 cut(s) 420, 543, 752, 1651
Bso31I GGTCTC 1 cut(s) 1462
Bsp1286I GDGCHC 6 cut(s) 555, 724, 1242, 1290, 1628, 1640
Bsp19I CCATGG 1 cut(s) 817
BspACI CCGC 4 cut(s) 421, 602, 1398, 1567
BspANI GGCC 4 cut(s) 420, 543, 752, 1651
BspCNI CTCAG 4 cut(s) 145, 277, 486, 1742
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 1 cut(s) 1287
BspMAI CTGCAG 1 cut(s) 1061
BspMI ACCTGC 1 cut(s) 1218
BspPI GGATC 4 cut(s) 898, 985, 1472, 1577
BspQI GCTCTTC 2 cut(s) 237, 1137
BspTNI GGTCTC 1 cut(s) 1462
BsrBI CCGCTC 1 cut(s) 1398
BsrI ACTGG 6 cut(s) 83, 118, 231, 276, 579, 1465
BssECI CCNNGG 3 cut(s) 681, 706, 817
BssNAI GTATAC 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 706, 817
Bst1107I GTATAC 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 4 cut(s) 59, 910, 1244, 1351
Bst6I CTCTTC 2 cut(s) 237, 1137
BstC8I GCNNGC 4 cut(s) 796, 1061, 1360, 1636
BstDEI CTNAG 8 cut(s) 71, 132, 209, 285, 290, 494, 1111, 1729
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 4 cut(s) 127, 1339, 1524, 1636
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 152, 438
BstMAI GTCTC 3 cut(s) 217, 1300, 1462
BstMWI GCNNNNNNNGC 3 cut(s) 683, 1144, 1368
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 2 cut(s) 70, 602
BstPAI GACNNNNGTC 3 cut(s) 966, 1305, 1487
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 2 cut(s) 320, 1057
BstSLI GKGCMC 3 cut(s) 555, 1242, 1628
BstV1I GCAGC 2 cut(s) 629, 1603
BstX2I RGATCY 3 cut(s) 823, 1008, 1582
BstYI RGATCY 3 cut(s) 823, 1008, 1582
BstZ17I GTATAC 1 cut(s) 332
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 4 cut(s) 420, 543, 752, 1651
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 4 cut(s) 127, 1339, 1524, 1636
BtsIMutI CAGTG 4 cut(s) 282, 572, 906, 1356
BveI ACCTGC 1 cut(s) 1218
Cac8I GCNNGC 4 cut(s) 796, 1061, 1360, 1636
CaiI CAGNNNCTG 2 cut(s) 226, 1586
CciI TCATGA 1 cut(s) 924
CfoI GCGC 2 cut(s) 152, 438
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 4 cut(s) 4, 26, 301, 913
CspCI CAANNNNNGTGG 2 cut(s) 1336, 1371
CviQI GTAC 4 cut(s) 4, 26, 301, 913
DdeI CTNAG 8 cut(s) 71, 132, 209, 285, 290, 494, 1111, 1729
DrdI GACNNNNNNGTC 2 cut(s) 143, 1414
DseDI GACNNNNNNGTC 2 cut(s) 143, 1414
EaeI YGGCCR 3 cut(s) 418, 541, 750
Eam1104I CTCTTC 2 cut(s) 237, 1137
EarI CTCTTC 2 cut(s) 237, 1137
Eco130I CCWWGG 2 cut(s) 706, 817
Eco24I GRGCYC 3 cut(s) 724, 1290, 1640
Eco31I GGTCTC 1 cut(s) 1462
Eco47I GGWCC 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 681
EcoT14I CCWWGG 2 cut(s) 706, 817
EcoT38I GRGCYC 3 cut(s) 724, 1290, 1640
ErhI CCWWGG 2 cut(s) 706, 817
FalI AAGNNNNNCTT 4 cut(s) 1484, 1516, 1590, 1622
FaqI GGGAC 2 cut(s) 196, 608
FauI CCCGC 1 cut(s) 1391
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 4 cut(s) 421, 603, 618, 1617
FokI GGATG 4 cut(s) 114, 1346, 1531, 1643
FriOI GRGCYC 3 cut(s) 724, 1290, 1640
Fsp4HI GCNGC 4 cut(s) 421, 603, 618, 1617
FspBI CTAG 5 cut(s) 17, 176, 1037, 1194, 1679
GlaI GCGC 2 cut(s) 151, 437
GluI GCNGC 4 cut(s) 421, 603, 618, 1617
GsaI CCCAGC 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 4 cut(s) 420, 543, 752, 1651
HhaI GCGC 2 cut(s) 152, 438
Hin6I GCGC 2 cut(s) 150, 436
HinP1I GCGC 2 cut(s) 150, 436
HincII GTYRAC 2 cut(s) 1042, 1561
HindII GTYRAC 2 cut(s) 1042, 1561
HindIII AAGCTT 3 cut(s) 1076, 1108, 1316
HinfI GANTC 8 cut(s) 86, 95, 144, 255, 526, 863, 1660, 1721
HpaI GTTAAC 1 cut(s) 1042
HphI GGTGA 4 cut(s) 90, 227, 355, 1689
Hpy166II GTNNAC 8 cut(s) 332, 453, 553, 913, 1042, 1240, 1561, 1626
Hpy188I TCNGA 9 cut(s) 91, 444, 495, 982, 1155, 1300, 1420, 1482, 1732
Hpy8I GTNNAC 8 cut(s) 332, 453, 553, 913, 1042, 1240, 1561, 1626
HpyAV CCTTC 3 cut(s) 417, 846, 968
HpyCH4III ACNGT 4 cut(s) 59, 910, 1244, 1351
HpyCH4IV ACGT 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 683, 1144, 1368
HpyF3I CTNAG 8 cut(s) 71, 132, 209, 285, 290, 494, 1111, 1729
HpySE526I ACGT 1 cut(s) 483
HspAI GCGC 2 cut(s) 150, 436
KspAI GTTAAC 1 cut(s) 1042
LguI GCTCTTC 2 cut(s) 237, 1137
LmnI GCTCC 1 cut(s) 1285
Lsp1109I GCAGC 2 cut(s) 629, 1603
LweI GCATC 3 cut(s) 1324, 1567, 1621
MaeI CTAG 5 cut(s) 17, 176, 1037, 1194, 1679
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 7 cut(s) 74, 726, 769, 1244, 1342, 1456, 1695
MbiI CCGCTC 1 cut(s) 1398
MboII GAAGA 7 cut(s) 224, 348, 454, 630, 887, 890, 1154
MflI RGATCY 3 cut(s) 823, 1008, 1582
MhlI GDGCHC 6 cut(s) 555, 724, 1242, 1290, 1628, 1640
MlsI TGGCCA 2 cut(s) 543, 752
MluCI AATT 7 cut(s) 106, 270, 313, 385, 957, 1156, 1602
MluNI TGGCCA 2 cut(s) 543, 752
MlyI GAGTC 3 cut(s) 153, 872, 1715
MmeI TCCRAC 3 cut(s) 466, 1496, 1505
Mox20I TGGCCA 2 cut(s) 543, 752
MroXI GAANNNNTTC 2 cut(s) 352, 1602
MscI TGGCCA 2 cut(s) 543, 752
MseI TTAA 8 cut(s) 156, 392, 651, 951, 1023, 1041, 1172, 1502
MslI CAYNNNNRTG 1 cut(s) 1131
Msp20I TGGCCA 2 cut(s) 543, 752
MspA1I CMGCKG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 683
MwoI GCNNNNNNNGC 3 cut(s) 683, 1144, 1368
NcoI CCATGG 1 cut(s) 817
NlaIV GGNNCC 1 cut(s) 1287
NmuCI GTSAC 3 cut(s) 1244, 1456, 1695
NspI RCATGY 2 cut(s) 70, 602
PagI TCATGA 1 cut(s) 924
PciSI GCTCTTC 2 cut(s) 237, 1137
PdmI GAANNNNTTC 2 cut(s) 352, 1602
PfeI GAWTC 5 cut(s) 86, 95, 255, 526, 1660
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 4 cut(s) 422, 604, 619, 1618
PleI GAGTC 3 cut(s) 152, 871, 1715
PpsI GAGTC 3 cut(s) 152, 871, 1715
PshAI GACNNNNGTC 3 cut(s) 966, 1305, 1487
Psp6I CCWGG 1 cut(s) 681
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 1287
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 1061
PstNI CAGNNNCTG 2 cut(s) 226, 1586
PsuI RGATCY 3 cut(s) 823, 1008, 1582
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 4 cut(s) 5, 27, 302, 914
RsaNI GTAC 4 cut(s) 4, 26, 301, 913
RseI CAYNNNNRTG 1 cut(s) 1131
SapI GCTCTTC 2 cut(s) 237, 1137
SaqAI TTAA 8 cut(s) 156, 392, 651, 951, 1023, 1041, 1172, 1502
SatI GCNGC 4 cut(s) 421, 603, 618, 1617
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 3 cut(s) 153, 872, 1715
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 6 cut(s) 555, 724, 1242, 1290, 1628, 1640
SfaNI GCATC 3 cut(s) 1324, 1567, 1621
SfcI CTRYAG 2 cut(s) 320, 1057
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 1131
SmlI CTYRAG 2 cut(s) 304, 1448
SmoI CTYRAG 2 cut(s) 304, 1448
Sse9I AATT 7 cut(s) 106, 270, 313, 385, 957, 1156, 1602
SsiI CCGC 4 cut(s) 421, 602, 1398, 1567
SspI AATATT 1 cut(s) 343
SspMI CTAG 5 cut(s) 17, 176, 1037, 1194, 1679
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 2 cut(s) 706, 817
TaaI ACNGT 4 cut(s) 59, 910, 1244, 1351
TaiI ACGT 1 cut(s) 486
TaqI TCGA 2 cut(s) 565, 734
TasI AATT 7 cut(s) 106, 270, 313, 385, 957, 1156, 1602
TatI WGTACW 2 cut(s) 3, 300
TauI GCSGC 2 cut(s) 423, 605
TfiI GAWTC 5 cut(s) 86, 95, 255, 526, 1660
Tru1I TTAA 8 cut(s) 156, 392, 651, 951, 1023, 1041, 1172, 1502
Tru9I TTAA 8 cut(s) 156, 392, 651, 951, 1023, 1041, 1172, 1502
TscAI CASTG 4 cut(s) 289, 579, 913, 1356
TseFI GTSAC 3 cut(s) 1244, 1456, 1695
TseI GCWGC 2 cut(s) 617, 1616
Tsp45I GTSAC 3 cut(s) 1244, 1456, 1695
TspGWI ACGGA 1 cut(s) 1643
TspRI CASTG 4 cut(s) 289, 579, 913, 1356
Van91I CCANNNNNTGG 1 cut(s) 485
VneI GTGCAC 3 cut(s) 551, 1238, 1624
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 2 cut(s) 70, 602
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 2 cut(s) 352, 1602
XspI CTAG 5 cut(s) 17, 176, 1037, 1194, 1679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.