Rh7AG034500

LRR receptor-like serine threonine-protein kinase FEI

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009488
Physical Location & Seq
Forward (+)
2386309 .. 2390557
4249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG034500.1

Sequence Viewer

Length: 1533 bp
ATGTACTTTTTTGCACTAGGTTTCGTACTGCTGGAAATGAAAAGCGTTTTGAATGACAGTAGGAACATGCTTAGTAACTGGCAGGATTCTGATGAATCACCTTGTAATTGGACTGGTATTACTTGCCATCCTCAGGACCAAAGAGTCAGCGCTATTAACCTACCCTATATGCAACTAGGAGGGACTATATCTCCCAGCATTGGCAAACTCAGTAGATTGCAGAGACTGGCGCTTCACCAGAACAGCTTACATGGATTCATTCCTAATGAAATTACCAGTTGCACTGAGCTTAGAGCTTTGTACTTGAGGGCTAATTATCTACAGGGAGGTATACCATCAAATATTGGAAACCTTTCTTCTCTCACCATATTGGATATATCAAGCAATTTATTAAAGGGTGCTATACCTTCATCTATTGGCCGCCTATCACGATTGCGCTCTCTGAACTTGTCCACTAACTTCTTCTCTGGGGAAATCCCAGACGTTGGAGTTCTGAGCAACTTTGGGAATAAGTCGTTTATTGGGAATCTTGATCTTTGTGGCCAACAAGTGCACAAGCCCTGTCGAACCTCACTGGGATTTCCTGCTGTATTGCCACATGCGGCGAGTGATGAAGCAGCTGTCCCTCCCAAGCGATCTTCACATTACATTAAGGGATTGCTTATTGGTGTCATGGCGACCCTGGCATTTGCACTTTTCATTCTCCTTGGCTTCCTTTGGGCTCGGTTACTATCGAAAAAGGAAAGAGTGGCCAAGAAGTATACAGAAGTTACGAAGCAAGTAAATCAAGAAGCAGGCACAAAACTCATCACTTTCCATGGAGATCTGCCCTACCCTTCGTGTGAGATCATTGACAAGTTAGAGTCGCTTGATGAAGAAGATGTTGTAGGATCAGGAGGATTTGGCACTGTGTACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTTAAAAGAATTGACAGAAGTCGGGAAGGATCAGATCAAGGTTTTGAGAGGGAGTTAGAGATCTTGGGTAGCATTAAGCATATAAACCTAGTTAACTTGCGAGGCTACTGCAGGCTTCCTACTTCAAAGCTTCTTATATATGATTATGTAGCTATGGGAAGCTTAGATGATTTCTTGCATGGAGATGGGCTGGAAGAACGACCTCTGAATTGGAGTGTGCGTTTAAGAATAGCTCTCGGTTCTGCTAGAGGGATAGCATACCTGCACCATGATTGCTGTCCAAAGATAGTGCACCGTGACATAAAATCCAGCAACATTTTGCTTGATGAAAACTTGGAGCCCCATGTCTCTGACTTTGGTCTTGCAAAGCTTTTGGTTGATGAGGATGCTCATGTTACCACAGTGGTTGCTGGCACTTTTGGCTATCTTGCACCAGAGTATTTGCAGAGCGGGAGAGCGACACAAAAGTCAGATGTATATAGCTTTGGAGTTCTTTTGCTTGAGCTTGTGACTGGAAAGAGACCTACTGATCCGACATTTGTCAAGAGAGGCTTAAATGTAGTTGGTTGGGTAGGCTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

510

Amino Acids

56.19

Weight (kDa)

7.21

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 9 - 42 9.1e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 67 - 152 4.3e-07 Leucine-rich repeat region
LRR_8 PF13855 97 - 153 1.1e-07 Leucine rich repeat
Pkinase PF00069 292 - 493 9.7e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 293 - 493 1.4e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 143, 1414
Acc36I ACCTGC 1 cut(s) 1218
AccB7I CCANNNNNTGG 1 cut(s) 485
AccBSI CCGCTC 1 cut(s) 1398
AccI GTMKAC 2 cut(s) 331, 761
AciI CCGC 3 cut(s) 421, 602, 1398
AclWI GGATC 3 cut(s) 898, 985, 1472
AcoI YGGCCR 3 cut(s) 418, 541, 750
AfaI GTAC 4 cut(s) 5, 27, 302, 914
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 3 cut(s) 133, 200, 485
AgsI TTSAA 2 cut(s) 52, 1074
AjnI CCWGG 1 cut(s) 681
Alw21I GWGCWC 2 cut(s) 555, 1242
Alw26I GTCTC 3 cut(s) 217, 1300, 1462
Alw44I GTGCAC 2 cut(s) 551, 1238
AlwI GGATC 3 cut(s) 898, 985, 1472
AlwNI CAGNNNCTG 1 cut(s) 226
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 3 cut(s) 418, 541, 750
ApaLI GTGCAC 2 cut(s) 551, 1238
ApeKI GCWGC 1 cut(s) 617
Asp700I GAANNNNTTC 1 cut(s) 352
AspLEI GCGC 3 cut(s) 152, 232, 438
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 3 cut(s) 90, 227, 355
AvaII GGWCC 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 132
BaeGI GKGCMC 2 cut(s) 555, 1242
BalI TGGCCA 2 cut(s) 543, 752
BanII GRGCYC 2 cut(s) 724, 1290
Bbv12I GWGCWC 2 cut(s) 555, 1242
BbvI GCAGC 1 cut(s) 629
BccI CCATC 3 cut(s) 135, 343, 1127
BcgI CGANNNNNNTGC 2 cut(s) 1038, 1072
BciT130I CCWGG 1 cut(s) 683
BcoDI GTCTC 3 cut(s) 217, 1300, 1462
BfaI CTAG 4 cut(s) 17, 176, 1037, 1194
BfmI CTRYAG 2 cut(s) 320, 1057
BfoI RGCGCY 2 cut(s) 153, 233
BfuAI ACCTGC 1 cut(s) 1218
BglII AGATCT 2 cut(s) 823, 1008
BisI GCNGC 3 cut(s) 421, 603, 618
BlsI GCNGC 3 cut(s) 422, 604, 619
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 1287
BmrFI CCNGG 1 cut(s) 683
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 1 cut(s) 1324
BmuI ACTGGG 1 cut(s) 584
BoxI GACNNNNGTC 3 cut(s) 966, 1305, 1487
BpuEI CTTGAG 2 cut(s) 325, 1469
BsaI GGTCTC 1 cut(s) 1462
BsaJI CCNNGG 3 cut(s) 681, 706, 817
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 1153, 1183
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 200, 485
Bse1I ACTGG 6 cut(s) 83, 118, 231, 276, 579, 1465
Bse21I CCTNAGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 683
BseDI CCNNGG 3 cut(s) 681, 706, 817
BseGI GGATG 2 cut(s) 127, 1339
BseLI CCNNNNNNNGG 3 cut(s) 133, 200, 485
BseMII CTCAG 4 cut(s) 146, 223, 276, 485
BseNI ACTGG 6 cut(s) 83, 118, 231, 276, 579, 1465
BseSI GKGCMC 2 cut(s) 555, 1242
BseXI GCAGC 1 cut(s) 629
BseYI CCCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 1196
BshFI GGCC 3 cut(s) 420, 543, 752
BsiHKAI GWGCWC 2 cut(s) 555, 1242
BslFI GGGAC 2 cut(s) 196, 608
BslI CCNNNNNNNGG 3 cut(s) 133, 200, 485
BsmAI GTCTC 3 cut(s) 217, 1300, 1462
BsmFI GGGAC 2 cut(s) 196, 608
BsnI GGCC 3 cut(s) 420, 543, 752
Bso31I GGTCTC 1 cut(s) 1462
Bsp1286I GDGCHC 4 cut(s) 555, 724, 1242, 1290
Bsp143I GATC 9 cut(s) 532, 635, 823, 846, 890, 977, 982, 1008, 1477
Bsp19I CCATGG 1 cut(s) 817
BspACI CCGC 3 cut(s) 421, 602, 1398
BspANI GGCC 3 cut(s) 420, 543, 752
BspCNI CTCAG 4 cut(s) 145, 222, 277, 486
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 1 cut(s) 1287
BspMAI CTGCAG 1 cut(s) 1061
BspMI ACCTGC 1 cut(s) 1218
BspPI GGATC 3 cut(s) 898, 985, 1472
BspTNI GGTCTC 1 cut(s) 1462
BsrBI CCGCTC 1 cut(s) 1398
BsrI ACTGG 6 cut(s) 83, 118, 231, 276, 579, 1465
BssECI CCNNGG 3 cut(s) 681, 706, 817
BssMI GATC 9 cut(s) 532, 635, 823, 846, 890, 977, 982, 1008, 1477
BssNAI GTATAC 2 cut(s) 332, 762
BssT1I CCWWGG 2 cut(s) 706, 817
Bst1107I GTATAC 2 cut(s) 332, 762
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 4 cut(s) 59, 910, 1244, 1351
BstC8I GCNNGC 3 cut(s) 796, 1061, 1360
BstDEI CTNAG 7 cut(s) 71, 132, 209, 285, 290, 494, 1111
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 2 cut(s) 127, 1339
BstH2I RGCGCY 2 cut(s) 153, 233
BstHHI GCGC 3 cut(s) 152, 232, 438
BstKTI GATC 9 cut(s) 535, 638, 826, 849, 893, 980, 985, 1011, 1480
BstMAI GTCTC 3 cut(s) 217, 1300, 1462
BstMBI GATC 9 cut(s) 532, 635, 823, 846, 890, 977, 982, 1008, 1477
BstMWI GCNNNNNNNGC 2 cut(s) 683, 1368
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 2 cut(s) 70, 602
BstPAI GACNNNNGTC 3 cut(s) 966, 1305, 1487
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 2 cut(s) 320, 1057
BstSLI GKGCMC 2 cut(s) 555, 1242
BstV1I GCAGC 1 cut(s) 629
BstX2I RGATCY 2 cut(s) 823, 1008
BstYI RGATCY 2 cut(s) 823, 1008
BstZ17I GTATAC 2 cut(s) 332, 762
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 3 cut(s) 420, 543, 752
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 2 cut(s) 127, 1339
BtsIMutI CAGTG 4 cut(s) 282, 572, 906, 1356
BveI ACCTGC 1 cut(s) 1218
Cac8I GCNNGC 3 cut(s) 796, 1061, 1360
CaiI CAGNNNCTG 1 cut(s) 226
CciI TCATGA 1 cut(s) 924
CfoI GCGC 3 cut(s) 152, 232, 438
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 4 cut(s) 4, 26, 301, 913
CspCI CAANNNNNGTGG 2 cut(s) 1336, 1371
CviQI GTAC 4 cut(s) 4, 26, 301, 913
DdeI CTNAG 7 cut(s) 71, 132, 209, 285, 290, 494, 1111
DpnI GATC 9 cut(s) 534, 637, 825, 848, 892, 979, 984, 1010, 1479
DpnII GATC 9 cut(s) 532, 635, 823, 846, 890, 977, 982, 1008, 1477
DrdI GACNNNNNNGTC 2 cut(s) 143, 1414
DseDI GACNNNNNNGTC 2 cut(s) 143, 1414
EaeI YGGCCR 3 cut(s) 418, 541, 750
Eco130I CCWWGG 2 cut(s) 706, 817
Eco24I GRGCYC 2 cut(s) 724, 1290
Eco31I GGTCTC 1 cut(s) 1462
Eco47I GGWCC 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 681
EcoT14I CCWWGG 2 cut(s) 706, 817
EcoT38I GRGCYC 2 cut(s) 724, 1290
ErhI CCWWGG 2 cut(s) 706, 817
FalI AAGNNNNNCTT 2 cut(s) 1484, 1516
FaqI GGGAC 2 cut(s) 196, 608
FauI CCCGC 1 cut(s) 1391
FblI GTMKAC 2 cut(s) 331, 761
Fnu4HI GCNGC 3 cut(s) 421, 603, 618
FokI GGATG 2 cut(s) 114, 1346
FriOI GRGCYC 2 cut(s) 724, 1290
Fsp4HI GCNGC 3 cut(s) 421, 603, 618
FspBI CTAG 4 cut(s) 17, 176, 1037, 1194
GlaI GCGC 3 cut(s) 151, 231, 437
GluI GCNGC 3 cut(s) 421, 603, 618
GsaI CCCAGC 1 cut(s) 198
HaeII RGCGCY 2 cut(s) 153, 233
HaeIII GGCC 3 cut(s) 420, 543, 752
HhaI GCGC 3 cut(s) 152, 232, 438
Hin6I GCGC 3 cut(s) 150, 230, 436
HinP1I GCGC 3 cut(s) 150, 230, 436
HincII GTYRAC 1 cut(s) 1042
HindII GTYRAC 1 cut(s) 1042
HindIII AAGCTT 3 cut(s) 1076, 1108, 1316
HinfI GANTC 6 cut(s) 86, 95, 144, 255, 526, 863
HpaI GTTAAC 1 cut(s) 1042
HphI GGTGA 3 cut(s) 90, 227, 355
Hpy166II GTNNAC 7 cut(s) 332, 453, 553, 762, 913, 1042, 1240
Hpy188I TCNGA 8 cut(s) 91, 444, 495, 982, 1155, 1300, 1420, 1482
Hpy188III TCNNGA 8 cut(s) 134, 429, 530, 788, 894, 925, 971, 1492
Hpy8I GTNNAC 7 cut(s) 332, 453, 553, 762, 913, 1042, 1240
HpyAV CCTTC 3 cut(s) 417, 846, 968
HpyCH4III ACNGT 4 cut(s) 59, 910, 1244, 1351
HpyCH4IV ACGT 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 683, 1368
HpyF3I CTNAG 7 cut(s) 71, 132, 209, 285, 290, 494, 1111
HpySE526I ACGT 1 cut(s) 483
HspAI GCGC 3 cut(s) 150, 230, 436
KspAI GTTAAC 1 cut(s) 1042
Kzo9I GATC 9 cut(s) 532, 635, 823, 846, 890, 977, 982, 1008, 1477
LmnI GCTCC 1 cut(s) 1285
Lsp1109I GCAGC 1 cut(s) 629
LweI GCATC 1 cut(s) 1324
MaeI CTAG 4 cut(s) 17, 176, 1037, 1194
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 6 cut(s) 74, 726, 769, 1244, 1342, 1456
MalI GATC 9 cut(s) 534, 637, 825, 848, 892, 979, 984, 1010, 1479
MbiI CCGCTC 1 cut(s) 1398
MboI GATC 9 cut(s) 532, 635, 823, 846, 890, 977, 982, 1008, 1477
MboII GAAGA 6 cut(s) 348, 454, 630, 887, 890, 1154
MflI RGATCY 2 cut(s) 823, 1008
MhlI GDGCHC 4 cut(s) 555, 724, 1242, 1290
MlsI TGGCCA 2 cut(s) 543, 752
MluCI AATT 6 cut(s) 106, 270, 313, 385, 957, 1156
MluNI TGGCCA 2 cut(s) 543, 752
MlyI GAGTC 2 cut(s) 153, 872
MmeI TCCRAC 2 cut(s) 466, 1505
Mox20I TGGCCA 2 cut(s) 543, 752
MroXI GAANNNNTTC 1 cut(s) 352
MscI TGGCCA 2 cut(s) 543, 752
MseI TTAA 8 cut(s) 156, 392, 651, 951, 1023, 1041, 1172, 1502
MslI CAYNNNNRTG 1 cut(s) 1131
Msp20I TGGCCA 2 cut(s) 543, 752
MspA1I CMGCKG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 683
MwoI GCNNNNNNNGC 2 cut(s) 683, 1368
NcoI CCATGG 1 cut(s) 817
NdeII GATC 9 cut(s) 532, 635, 823, 846, 890, 977, 982, 1008, 1477
NlaIV GGNNCC 1 cut(s) 1287
NmuCI GTSAC 2 cut(s) 1244, 1456
NspI RCATGY 2 cut(s) 70, 602
PagI TCATGA 1 cut(s) 924
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 4 cut(s) 86, 95, 255, 526
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 3 cut(s) 422, 604, 619
PleI GAGTC 2 cut(s) 152, 871
PpsI GAGTC 2 cut(s) 152, 871
PshAI GACNNNNGTC 3 cut(s) 966, 1305, 1487
Psp6I CCWGG 1 cut(s) 681
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 1287
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 1061
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 823, 1008
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 4 cut(s) 5, 27, 302, 914
RsaNI GTAC 4 cut(s) 4, 26, 301, 913
RseI CAYNNNNRTG 1 cut(s) 1131
SaqAI TTAA 8 cut(s) 156, 392, 651, 951, 1023, 1041, 1172, 1502
SatI GCNGC 3 cut(s) 421, 603, 618
Sau3AI GATC 9 cut(s) 532, 635, 823, 846, 890, 977, 982, 1008, 1477
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 153, 872
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 4 cut(s) 555, 724, 1242, 1290
SfaNI GCATC 1 cut(s) 1324
SfcI CTRYAG 2 cut(s) 320, 1057
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 1131
SmlI CTYRAG 2 cut(s) 304, 1448
SmoI CTYRAG 2 cut(s) 304, 1448
Sse9I AATT 6 cut(s) 106, 270, 313, 385, 957, 1156
SsiI CCGC 3 cut(s) 421, 602, 1398
SspI AATATT 1 cut(s) 343
SspMI CTAG 4 cut(s) 17, 176, 1037, 1194
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 2 cut(s) 706, 817
TaaI ACNGT 4 cut(s) 59, 910, 1244, 1351
TaiI ACGT 1 cut(s) 486
TaqI TCGA 2 cut(s) 565, 734
TasI AATT 6 cut(s) 106, 270, 313, 385, 957, 1156
TatI WGTACW 2 cut(s) 3, 300
TauI GCSGC 2 cut(s) 423, 605
TfiI GAWTC 4 cut(s) 86, 95, 255, 526
Tru1I TTAA 8 cut(s) 156, 392, 651, 951, 1023, 1041, 1172, 1502
Tru9I TTAA 8 cut(s) 156, 392, 651, 951, 1023, 1041, 1172, 1502
TscAI CASTG 4 cut(s) 289, 579, 913, 1356
TseFI GTSAC 2 cut(s) 1244, 1456
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 2 cut(s) 1244, 1456
TspRI CASTG 4 cut(s) 289, 579, 913, 1356
Van91I CCANNNNNTGG 1 cut(s) 485
VneI GTGCAC 2 cut(s) 551, 1238
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 2 cut(s) 70, 602
XmiI GTMKAC 2 cut(s) 331, 761
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 4 cut(s) 17, 176, 1037, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.