Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009488

Physical Location & Seq

Genomic Coordinates Forward (+)

2609686 .. 2613953

Gene Structure 4268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGATTCATTCCTAATGAAATTACCAGTTGCACTGAGCTTAGAGCTTTGTAAGAGGAGATCATTCCTTTCTCTTTTGTACTTTTCGTTTGAGTTGTATCATGTGAATCTATTTGTAATGTATGACATTAGAACTGAGTATTGGCTATATATGCTTTCTATTAGGTACTTGAGGGCTAATTATCTACAGGGAGGTATACCATCAAATATTGGAAACCTTTCTTCTCTCACCATATTGGATATATCAAGCAATTTATTAAAGGGTGCTATACCTTCATCTATTGGCCGCCTATCACGATTGCGCTCTCTGAACTTGTCCACTAACTTCTTCTCTGGGGAAATCCCAGACGTTGGAGTTCTGAGCAACTTTGGGAATAAGTCGTTTATTGGGAATCTTGATCTTTGTGGCCAACAAGTGCACAAGCCCTGTCGAACCTCACTGGGATTTCCTGCTGTATTGCCACATGCGGCGAGTGATGAAGCAGCTGTCCCTCCGAAGCGATCTTCACATTACATTAAGGGATTGCTTATTGGTGTCATGGCGACCCTGGCATTTGCACTTTTCATTCTCCTTGGCTTCCTTTGGGCTCGGTTACTATCGAAAAAGGAAAGAGTGGCCAAGAAATATACAGAAGTTACGAAGCAAGTAAATCAAGAAGCAGGCACAAAACTCATCACTTTCCATGGAGATCTGCCCTACCCTTCGTGTGAGATCATTGACAAGTTAGAGTCGCTTGATGAAGAAGATGTTGTAGGATCAGGAGGATTTGGCACTGTGTACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTTAAAAGAATTGACAGAAGTCGGGAAGGATCAGATCAAGGTTTTGAGAGGGAGTTAGAGATCTTGGGTAGCATTAAGCATATAAACCTAGTTAACTTGCGAGGCTACTGCAGGCTTCCTACTTCAAAGCTTCTTATATATGATTATGTAGCTATGGGAAGCTTAGATGATTTCTTGCATGGAGATGGGCTGGAAGAGCGACCTCTGAATTGGAGTGTGCGTTTAAGAATAGCTCTCGGTTCTGCTAGAGGGATAGCATACCTGCACCATGATTGCTGTCCAAAGATAGTGCACCGTGACATAAAATCCAGCAACATTTTGCTTGATGAAAACTTGGAGCCCCATGTCTCTGACTTTGGTCTTGCAAAGCTTTTGGTTGATGAGGATGCCCATGTTACCACAGTGGTTGCTGGCACTTTTGGCTATCTTGCACCAGAGTATTTGCAGAGCGGGAGAGCGACACAAAAGTCAGATGTATATAGCTTTGGAGTTCTTTTGCTTGAGCTTGTGACTGGAAAGAGACCTACTGATCCGACATTTGTCAAGAGAGGCTTAAATGTAGTTGGTTGGATGAACACGCTATTGAGAGAGAACCGATTGAAAGATTTAGTTGACAAGCGGTGCAGAGATGCAGATCCTGAAAGTCTGGAAGCAATTCTTGAAATAGCTGCAAGGTGCACGGATGCGAGCCCAGATGATAGGCCATCAATGAATCAGGTATTGCAGTTGCTAGAGCAAGAAGTCATGTCACCTTGCCCAAGTGATTTCTACGACTCCCACTCAGATCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

535

Amino Acids

59.82

Weight (kDa)

6.19

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	51 - 107	3.9e-06	Leucine-rich repeat region
LRR_8	PF13855	56 - 108	4e-06	Leucine rich repeat
Pkinase	PF00069	247 - 513	3.4e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	248 - 514	1.3e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62710 AT5G62710
fragaria_vesca	FvH4_5g15570 FvH4_5g15570
malus_domestica	MD06G1187300.v1.1 MD14G1193700.v1.1
prunus_persica	Prupe.5G185500_v2.0.a1 Prupe.5G185500_v2.0.a1 Prupe.5G185500_v2.0.a1
pyrus_communis	pycom06g16630 pycom14g16110
rosa_chinensis	RchiOBHm_Chr7g0180531
rosa_laevigata	RLG00000005260
rosa_multiflora	Rmu_co8247179.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272820
rosa_rugosa	Rorug06G0433200 Rorug06G0433200
rosa_samantha	Rh7AG034500 Rh7BG034500 Rh7CG036200 Rh7DG034800
rosa_wichuraiana	Rw7G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1279
Acc36I	ACCTGC	1 cut(s)	1083
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	1263
AccI	GTMKAC	1 cut(s)	196
AciI	CCGC	4 cut(s)	286, 467, 1263, 1432
AclWI	GGATC	4 cut(s)	763, 850, 1337, 1442
AcoI	YGGCCR	3 cut(s)	283, 406, 615
AfaI	GTAC	3 cut(s)	80, 167, 779
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	939, 1414, 1475
AjnI	CCWGG	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
Alw21I	GWGCWC	3 cut(s)	420, 1107, 1493
Alw26I	GTCTC	2 cut(s)	1165, 1327
Alw44I	GTGCAC	3 cut(s)	416, 1103, 1489
AlwI	GGATC	4 cut(s)	763, 850, 1337, 1442
AlwNI	CAGNNNCTG	1 cut(s)	1451
AoxI	GGCC	4 cut(s)	283, 406, 615, 1514
ApaLI	GTGCAC	3 cut(s)	416, 1103, 1489
ApeKI	GCWGC	2 cut(s)	482, 1481
Asp700I	GAANNNNTTC	2 cut(s)	217, 1467
AspLEI	GCGC	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	220, 1554
BaeGI	GKGCMC	3 cut(s)	420, 1107, 1493
BalI	TGGCCA	2 cut(s)	408, 617
BanII	GRGCYC	3 cut(s)	589, 1155, 1505
Bbv12I	GWGCWC	3 cut(s)	420, 1107, 1493
BbvI	GCAGC	2 cut(s)	494, 1468
BccI	CCATC	3 cut(s)	208, 992, 1525
BcgI	CGANNNNNNTGC	2 cut(s)	903, 937
BciT130I	CCWGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	1165, 1327
BfaI	CTAG	3 cut(s)	902, 1059, 1544
BfmI	CTRYAG	2 cut(s)	185, 922
BfuAI	ACCTGC	1 cut(s)	1083
BglII	AGATCT	2 cut(s)	688, 873
BisI	GCNGC	4 cut(s)	286, 468, 483, 1482
BlsI	GCNGC	4 cut(s)	287, 469, 484, 1483
Bme1390I	CCNGG	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	1152
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	3 cut(s)	1189, 1432, 1486
BmuI	ACTGGG	1 cut(s)	449
BoxI	GACNNNNGTC	3 cut(s)	831, 1170, 1352
BpuEI	CTTGAG	2 cut(s)	190, 1334
BsaBI	GATNNNNATC	1 cut(s)	1446
BsaI	GGTCTC	1 cut(s)	1327
BsaJI	CCNNGG	3 cut(s)	546, 571, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	1018, 1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	3 cut(s)	26, 444, 1330
Bse8I	GATNNNNATC	1 cut(s)	1446
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	3 cut(s)	546, 571, 682
BseGI	GGATG	3 cut(s)	1204, 1389, 1501
BseJI	GATNNNNATC	1 cut(s)	1446
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	4 cut(s)	26, 126, 350, 1608
BseNI	ACTGG	3 cut(s)	26, 444, 1330
BseRI	GAGGAG	1 cut(s)	70
BseSI	GKGCMC	3 cut(s)	420, 1107, 1493
BseXI	GCAGC	2 cut(s)	494, 1468
BsgI	GTGCAG	2 cut(s)	1061, 1456
BshFI	GGCC	4 cut(s)	285, 408, 617, 1516
BsiHKAI	GWGCWC	3 cut(s)	420, 1107, 1493
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	1165, 1327
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	4 cut(s)	285, 408, 617, 1516
Bso31I	GGTCTC	1 cut(s)	1327
Bsp1286I	GDGCHC	6 cut(s)	420, 589, 1107, 1155, 1493, 1505
Bsp19I	CCATGG	1 cut(s)	682
BspACI	CCGC	4 cut(s)	286, 467, 1263, 1432
BspANI	GGCC	4 cut(s)	285, 408, 617, 1516
BspCNI	CTCAG	4 cut(s)	27, 127, 351, 1607
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	1152
BspMAI	CTGCAG	1 cut(s)	926
BspMI	ACCTGC	1 cut(s)	1083
BspPI	GGATC	4 cut(s)	763, 850, 1337, 1442
BspQI	GCTCTTC	1 cut(s)	1002
BspTNI	GGTCTC	1 cut(s)	1327
BsrBI	CCGCTC	1 cut(s)	1263
BsrI	ACTGG	3 cut(s)	26, 444, 1330
BssECI	CCNNGG	3 cut(s)	546, 571, 682
BssNAI	GTATAC	1 cut(s)	197
BssT1I	CCWWGG	2 cut(s)	571, 682
Bst1107I	GTATAC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	3 cut(s)	775, 1109, 1216
Bst6I	CTCTTC	1 cut(s)	1002
BstC8I	GCNNGC	4 cut(s)	661, 926, 1225, 1501
BstDEI	CTNAG	6 cut(s)	35, 40, 135, 359, 976, 1594
BstDSI	CCRYGG	1 cut(s)	682
BstF5I	GGATG	3 cut(s)	1204, 1389, 1501
BstHHI	GCGC	1 cut(s)	303
BstMAI	GTCTC	2 cut(s)	1165, 1327
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 548, 1009, 1233
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	467
BstPAI	GACNNNNGTC	3 cut(s)	831, 1170, 1352
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	2 cut(s)	185, 922
BstSLI	GKGCMC	3 cut(s)	420, 1107, 1493
BstV1I	GCAGC	2 cut(s)	494, 1468
BstX2I	RGATCY	3 cut(s)	688, 873, 1447
BstYI	RGATCY	3 cut(s)	688, 873, 1447
BstZ17I	GTATAC	1 cut(s)	197
BsuRI	GGCC	4 cut(s)	285, 408, 617, 1516
BtgI	CCRYGG	1 cut(s)	682
BtsCI	GGATG	3 cut(s)	1204, 1389, 1501
BtsIMutI	CAGTG	4 cut(s)	32, 437, 771, 1221
BveI	ACCTGC	1 cut(s)	1083
Cac8I	GCNNGC	4 cut(s)	661, 926, 1225, 1501
CaiI	CAGNNNCTG	1 cut(s)	1451
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	1 cut(s)	303
Csp6I	GTAC	3 cut(s)	79, 166, 778
CspCI	CAANNNNNGTGG	2 cut(s)	1201, 1236
CviQI	GTAC	3 cut(s)	79, 166, 778
DdeI	CTNAG	6 cut(s)	35, 40, 135, 359, 976, 1594
DrdI	GACNNNNNNGTC	1 cut(s)	1279
DseDI	GACNNNNNNGTC	1 cut(s)	1279
EaeI	YGGCCR	3 cut(s)	283, 406, 615
Eam1104I	CTCTTC	1 cut(s)	1002
EarI	CTCTTC	1 cut(s)	1002
Eco130I	CCWWGG	2 cut(s)	571, 682
Eco24I	GRGCYC	3 cut(s)	589, 1155, 1505
Eco31I	GGTCTC	1 cut(s)	1327
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	571, 682
EcoT38I	GRGCYC	3 cut(s)	589, 1155, 1505
ErhI	CCWWGG	2 cut(s)	571, 682
FalI	AAGNNNNNCTT	4 cut(s)	1349, 1381, 1455, 1487
FaqI	GGGAC	1 cut(s)	473
FauI	CCCGC	1 cut(s)	1256
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	286, 468, 483, 1482
FokI	GGATG	3 cut(s)	1211, 1396, 1508
FriOI	GRGCYC	3 cut(s)	589, 1155, 1505
Fsp4HI	GCNGC	4 cut(s)	286, 468, 483, 1482
FspBI	CTAG	3 cut(s)	902, 1059, 1544
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	286, 468, 483, 1482
HaeIII	GGCC	4 cut(s)	285, 408, 617, 1516
HhaI	GCGC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	2 cut(s)	907, 1426
HindII	GTYRAC	2 cut(s)	907, 1426
HindIII	AAGCTT	3 cut(s)	941, 973, 1181
HinfI	GANTC	6 cut(s)	5, 106, 391, 728, 1525, 1586
HpaI	GTTAAC	1 cut(s)	907
HphI	GGTGA	2 cut(s)	220, 1554
Hpy166II	GTNNAC	8 cut(s)	197, 318, 418, 778, 907, 1105, 1426, 1491
Hpy188I	TCNGA	9 cut(s)	309, 360, 495, 847, 1020, 1165, 1285, 1347, 1597
Hpy8I	GTNNAC	8 cut(s)	197, 318, 418, 778, 907, 1105, 1426, 1491
HpyAV	CCTTC	3 cut(s)	282, 711, 833
HpyCH4III	ACNGT	3 cut(s)	775, 1109, 1216
HpyCH4IV	ACGT	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 548, 1009, 1233
HpyF3I	CTNAG	6 cut(s)	35, 40, 135, 359, 976, 1594
HpySE526I	ACGT	1 cut(s)	348
HspAI	GCGC	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	907
LguI	GCTCTTC	1 cut(s)	1002
LmnI	GCTCC	1 cut(s)	1150
Lsp1109I	GCAGC	2 cut(s)	494, 1468
LweI	GCATC	3 cut(s)	1189, 1432, 1486
MaeI	CTAG	3 cut(s)	902, 1059, 1544
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	6 cut(s)	591, 634, 1109, 1207, 1321, 1560
MbiI	CCGCTC	1 cut(s)	1263
MboII	GAAGA	6 cut(s)	213, 319, 495, 752, 755, 1019
MflI	RGATCY	3 cut(s)	688, 873, 1447
MhlI	GDGCHC	6 cut(s)	420, 589, 1107, 1155, 1493, 1505
MlsI	TGGCCA	2 cut(s)	408, 617
MluCI	AATT	6 cut(s)	20, 178, 250, 822, 1021, 1467
MluNI	TGGCCA	2 cut(s)	408, 617
MlyI	GAGTC	2 cut(s)	737, 1580
MmeI	TCCRAC	3 cut(s)	331, 1361, 1370
Mox20I	TGGCCA	2 cut(s)	408, 617
MroXI	GAANNNNTTC	2 cut(s)	217, 1467
MscI	TGGCCA	2 cut(s)	408, 617
MseI	TTAA	7 cut(s)	257, 516, 816, 888, 906, 1037, 1367
MslI	CAYNNNNRTG	1 cut(s)	996
Msp20I	TGGCCA	2 cut(s)	408, 617
MspA1I	CMGCKG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	4 cut(s)	151, 548, 1009, 1233
NcoI	CCATGG	1 cut(s)	682
NlaIV	GGNNCC	1 cut(s)	1152
NmuCI	GTSAC	3 cut(s)	1109, 1321, 1560
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	1002
PdmI	GAANNNNTTC	2 cut(s)	217, 1467
PfeI	GAWTC	4 cut(s)	5, 106, 391, 1525
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	287, 469, 484, 1483
PleI	GAGTC	2 cut(s)	736, 1580
PpsI	GAGTC	2 cut(s)	736, 1580
PshAI	GACNNNNGTC	3 cut(s)	831, 1170, 1352
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	1152
PstI	CTGCAG	1 cut(s)	926
PstNI	CAGNNNCTG	1 cut(s)	1451
PsuI	RGATCY	3 cut(s)	688, 873, 1447
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	3 cut(s)	80, 167, 779
RsaNI	GTAC	3 cut(s)	79, 166, 778
RseI	CAYNNNNRTG	1 cut(s)	996
SapI	GCTCTTC	1 cut(s)	1002
SaqAI	TTAA	7 cut(s)	257, 516, 816, 888, 906, 1037, 1367
SatI	GCNGC	4 cut(s)	286, 468, 483, 1482
SchI	GAGTC	2 cut(s)	737, 1580
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	6 cut(s)	420, 589, 1107, 1155, 1493, 1505
SfaNI	GCATC	3 cut(s)	1189, 1432, 1486
SfcI	CTRYAG	2 cut(s)	185, 922
SmiMI	CAYNNNNRTG	1 cut(s)	996
SmlI	CTYRAG	2 cut(s)	169, 1313
SmoI	CTYRAG	2 cut(s)	169, 1313
Sse9I	AATT	6 cut(s)	20, 178, 250, 822, 1021, 1467
SsiI	CCGC	4 cut(s)	286, 467, 1263, 1432
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	3 cut(s)	902, 1059, 1544
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	2 cut(s)	571, 682
TaaI	ACNGT	3 cut(s)	775, 1109, 1216
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	430, 599
TasI	AATT	6 cut(s)	20, 178, 250, 822, 1021, 1467
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	2 cut(s)	288, 470
TfiI	GAWTC	4 cut(s)	5, 106, 391, 1525
Tru1I	TTAA	7 cut(s)	257, 516, 816, 888, 906, 1037, 1367
Tru9I	TTAA	7 cut(s)	257, 516, 816, 888, 906, 1037, 1367
TscAI	CASTG	4 cut(s)	39, 444, 778, 1221
TseFI	GTSAC	3 cut(s)	1109, 1321, 1560
TseI	GCWGC	2 cut(s)	482, 1481
Tsp45I	GTSAC	3 cut(s)	1109, 1321, 1560
TspDTI	ATGAA	9 cut(s)	32, 264, 492, 553, 753, 806, 1155, 1400, 1538
TspGWI	ACGGA	1 cut(s)	1508
TspRI	CASTG	4 cut(s)	39, 444, 778, 1221
Van91I	CCANNNNNTGG	1 cut(s)	350
VneI	GTGCAC	3 cut(s)	416, 1103, 1489
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	196
XmnI	GAANNNNTTC	2 cut(s)	217, 1467
XspI	CTAG	3 cut(s)	902, 1059, 1544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.