Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256169.1

Orthogroup ID

OG0008000

Physical Location & Seq

Genomic Coordinates Forward (+)

18 .. 790

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256169.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgaggctggcgtcgccgttttctgagattgagagtttcgggtccgagtttgggactgagtcgactcggagatcgactcggagacgacgggctgcgagggagtcgaggaggaggccgagagtggtggtgcttcggaatttgaggaaggaaatgccatcggtggagatgaggaggaccacgagggttttcgggatggggaagggggtggacggagcccgagtcttgcgttcgggccgccgcctctggcccgagtcctctgtggtcaagcatgagagaaccaacgaggacgaggactggttcaagctcatcaagaacaatggggaaggtcgtgattctgacgcaattggtttaaagcataagggatggaccagagccacccggctagcgggtcataagcctaagccgaatatagttgtttctgtcagtcgagtccttgagaagcctgttgagactaagcttttggctgatgggctcaagcagtataagaggttcgggattgtatataccaggaagaggaaacggaccggtcactcggtcaatgttgtggagaatcaaagtggctctgaggatagaatgtacgggcagaggtttgctaggaagaggaggaagacaagtggcagtggcagcttggtaggagctgagaggttggatcttgcaagccctgaagtccagcctgcagttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPL1

Protein Analysis

228

Amino Acids

26.03

Weight (kDa)

11.3

Isoelectric Point (pI)

67.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04670 AT5G04670
fragaria_vesca	FvH4_7g05840 FvH4_7g05840 FvH4_7g05840
malus_domestica	MD02G1255000.v1.1 MD07G1067000.v1.1
prunus_persica	Prupe.2G084200_v2.0.a1 Prupe.2G084200_v2.0.a1
pyrus_communis	pycom02g21480 pycom07g05120
rosa_chinensis	RchiOBHm_Chr1g0332951
rosa_laevigata	RLG00000029631
rosa_multiflora	Rmu_co8256169.1_g000001 Rmu_co8522447.1_g000001 Rmu_sc0000117.1_g000032 Rmu_sc0000813.1_g000011
rosa_roxburghii	Rroxscaffold_4G00317850
rosa_rugosa	Rorug01G0106100
rosa_samantha	Rh1AG129300 Rh1BG098500 Rh1CG123200 Rh1DG135100
rosa_wichuraiana	Rw1G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	3 cut(s)	235, 238, 386
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	3 cut(s)	51, 385, 513
AgeI	ACCGGT	1 cut(s)	524
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	304, 457, 627, 638
AluI	AGCT	4 cut(s)	304, 457, 627, 638
Alw26I	GTCTC	2 cut(s)	76, 443
AlwI	GGATC	1 cut(s)	657
Ama87I	CYCGRG	2 cut(s)	216, 248
AoxI	GGCC	3 cut(s)	113, 232, 245
ApeKI	GCWGC	2 cut(s)	92, 624
ApoI	RAATTY	1 cut(s)	136
ArsI	GACNNNNNNTTYG	2 cut(s)	442, 474
AsiGI	ACCGGT	1 cut(s)	524
AspS9I	GGNCC	6 cut(s)	42, 174, 232, 246, 366, 522
AsuC2I	CCSGG	1 cut(s)	379
AsuNHI	GCTAGC	1 cut(s)	382
AvaI	CYCGRG	2 cut(s)	216, 248
AvaII	GGWCC	4 cut(s)	42, 174, 366, 522
BanII	GRGCYC	2 cut(s)	217, 474
BauI	CACGAG	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	79, 636
BccI	CCATC	4 cut(s)	163, 187, 357, 461
BciT130I	CCWGG	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	76, 443
BfaI	CTAG	2 cut(s)	383, 594
BfmI	CTRYAG	1 cut(s)	675
BisI	GCNGC	4 cut(s)	93, 235, 238, 625
BlsI	GCNGC	4 cut(s)	94, 236, 239, 626
Bme1390I	CCNGG	2 cut(s)	379, 508
Bme18I	GGWCC	4 cut(s)	42, 174, 366, 522
BmeT110I	CYCGRG	2 cut(s)	216, 248
BmgT120I	GGNCC	6 cut(s)	42, 174, 232, 246, 366, 522
BmiI	GGNNCC	2 cut(s)	43, 214
BmrFI	CCNGG	2 cut(s)	379, 508
BmtI	GCTAGC	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	614
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	455, 458
BpuMI	CCSGG	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 385, 513
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	198, 368
BseLI	CCNNNNNNNGG	3 cut(s)	51, 385, 513
BseMII	CTCAG	4 cut(s)	15, 48, 555, 630
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	4 cut(s)	121, 124, 184, 616
BseXI	GCAGC	2 cut(s)	79, 636
BshFI	GGCC	3 cut(s)	115, 234, 247
BshTI	ACCGGT	1 cut(s)	524
BsiHKCI	CYCGRG	2 cut(s)	216, 248
BsiSI	CCGG	2 cut(s)	379, 525
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	51, 385, 513
BsmAI	GTCTC	2 cut(s)	76, 443
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	115, 234, 247
BsoBI	CYCGRG	2 cut(s)	216, 248
Bsp1286I	GDGCHC	2 cut(s)	217, 474
Bsp143I	GATC	2 cut(s)	71, 649
BspACI	CCGC	3 cut(s)	235, 238, 386
BspANI	GGCC	3 cut(s)	115, 234, 247
BspCNI	CTCAG	4 cut(s)	16, 49, 556, 631
BspLI	GGNNCC	2 cut(s)	43, 214
BspMAI	CTGCAG	1 cut(s)	679
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	524
BssMI	GATC	2 cut(s)	71, 649
BssNI	GRCGYC	1 cut(s)	11
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	506, 593
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	9, 384, 658, 675
BstDEI	CTNAG	6 cut(s)	24, 57, 399, 453, 564, 639
BstF5I	GGATG	2 cut(s)	198, 368
BstKTI	GATC	2 cut(s)	74, 652
BstMAI	GTCTC	2 cut(s)	76, 443
BstMBI	GATC	2 cut(s)	71, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 624
BstNI	CCWGG	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	377, 506
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	2 cut(s)	79, 636
BstV2I	GAAGAC	1 cut(s)	614
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	115, 234, 247
BtsCI	GGATG	2 cut(s)	198, 368
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	4 cut(s)	9, 384, 658, 675
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	6 cut(s)	42, 174, 232, 246, 366, 522
CpoI	CGGWCCG	1 cut(s)	522
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	577
CspAI	ACCGGT	1 cut(s)	524
CspI	CGGWCCG	1 cut(s)	522
CviAII	CATG	1 cut(s)	269
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	6 cut(s)	24, 57, 399, 453, 564, 639
DpnI	GATC	2 cut(s)	73, 651
DpnII	GATC	2 cut(s)	71, 649
DraI	TTTAAA	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	506, 593
EarI	CTCTTC	2 cut(s)	506, 593
Eco24I	GRGCYC	2 cut(s)	217, 474
Eco47I	GGWCC	4 cut(s)	42, 174, 366, 522
Eco57I	CTGAAG	1 cut(s)	684
Eco88I	CYCGRG	2 cut(s)	216, 248
EcoRII	CCWGG	1 cut(s)	506
EcoT38I	GRGCYC	2 cut(s)	217, 474
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	1 cut(s)	272
FaiI	YATR	7 cut(s)	270, 357, 393, 410, 483, 502, 504
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	268
FauI	CCCGC	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	4 cut(s)	93, 235, 238, 625
FokI	GGATG	2 cut(s)	205, 375
FriOI	GRGCYC	2 cut(s)	217, 474
Fsp4HI	GCNGC	4 cut(s)	93, 235, 238, 625
FspBI	CTAG	2 cut(s)	383, 594
GluI	GCNGC	4 cut(s)	93, 235, 238, 625
HaeIII	GGCC	3 cut(s)	115, 234, 247
HapII	CCGG	2 cut(s)	379, 525
HgaI	GACGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	272
HincII	GTYRAC	2 cut(s)	63, 682
HindII	GTYRAC	2 cut(s)	63, 682
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	9 cut(s)	59, 64, 76, 101, 219, 251, 332, 429, 550
HpaII	CCGG	2 cut(s)	379, 525
Hpy166II	GTNNAC	3 cut(s)	63, 208, 682
Hpy188I	TCNGA	7 cut(s)	25, 46, 69, 81, 135, 337, 565
Hpy188III	TCNNGA	4 cut(s)	190, 310, 329, 493
Hpy8I	GTNNAC	3 cut(s)	63, 208, 682
Hpy99I	CGWCG	2 cut(s)	16, 90
HpyAV	CCTTC	3 cut(s)	139, 193, 317
HpyCH4V	TGCA	2 cut(s)	656, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 624
HpyF3I	CTNAG	6 cut(s)	24, 57, 399, 453, 564, 639
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	71, 649
LmnI	GCTCC	2 cut(s)	212, 635
Lsp1109I	GCAGC	2 cut(s)	79, 636
MaeI	CTAG	2 cut(s)	383, 594
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	2 cut(s)	73, 651
MboI	GATC	2 cut(s)	71, 649
MboII	GAAGA	3 cut(s)	523, 610, 619
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	217, 474
MluCI	AATT	2 cut(s)	136, 342
MlyI	GAGTC	7 cut(s)	58, 68, 70, 110, 228, 260, 438
MmeI	TCCRAC	1 cut(s)	627
MseI	TTAA	1 cut(s)	350
MspI	CCGG	2 cut(s)	379, 525
MspR9I	CCNGG	2 cut(s)	379, 508
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	2 cut(s)	13, 624
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	2 cut(s)	71, 649
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	43, 214
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	332, 550
PflFI	GACNNNGTC	1 cut(s)	58
PinAI	ACCGGT	1 cut(s)	524
PkrI	GCNGC	4 cut(s)	94, 236, 239, 626
PleI	GAGTC	7 cut(s)	58, 67, 70, 109, 227, 259, 437
PpsI	GAGTC	7 cut(s)	58, 67, 70, 109, 227, 259, 437
Psp6I	CCWGG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	43, 214
PspPI	GGNCC	6 cut(s)	42, 174, 232, 246, 366, 522
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PstI	CTGCAG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	649
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
Rsr2I	CGGWCCG	1 cut(s)	522
RsrII	CGGWCCG	1 cut(s)	522
SalI	GTCGAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	4 cut(s)	93, 235, 238, 625
Sau3AI	GATC	2 cut(s)	71, 649
Sau96I	GGNCC	6 cut(s)	42, 174, 232, 246, 366, 522
SchI	GAGTC	7 cut(s)	58, 68, 70, 110, 228, 260, 438
ScrFI	CCNGG	2 cut(s)	379, 508
SduI	GDGCHC	2 cut(s)	217, 474
SetI	ASST	8 cut(s)	306, 328, 459, 491, 590, 629, 640, 647
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	4 cut(s)	42, 174, 366, 522
SmlI	CTYRAG	2 cut(s)	434, 473
SmoI	CTYRAG	2 cut(s)	434, 473
Sse9I	AATT	2 cut(s)	136, 342
SsiI	CCGC	3 cut(s)	235, 238, 386
SspMI	CTAG	2 cut(s)	383, 594
StyD4I	CCNGG	2 cut(s)	377, 506
TaqI	TCGA	4 cut(s)	62, 74, 104, 427
TaqII	GACCGA	1 cut(s)	523
TasI	AATT	2 cut(s)	136, 342
TauI	GCSGC	2 cut(s)	237, 240
TfiI	GAWTC	2 cut(s)	332, 550
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	2 cut(s)	92, 624
Tsp45I	GTSAC	1 cut(s)	527
TspGWI	ACGGA	2 cut(s)	225, 535
TspRI	CASTG	1 cut(s)	625
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	4 cut(s)	42, 174, 366, 522
XapI	RAATTY	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	2 cut(s)	383, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.