Rorug01G0106100

Enhancer of polycomb-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008000
Physical Location & Seq
Reverse (-)
19048831 .. 19049651
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0106100.1

Sequence Viewer

Length: 696 bp
ATGACCAGGGTTTCAATGGTTACATTAGTTATTGTGATGTTAGGGGTGGTGATAATGGCGATTCTTTCGTATGGTTGCACTCCTAGTGGTGTAGCTTACTCGGTGGGAGTGGGAGACCCAGTGTGTTGGTCCATCCCTCCCCAACCGGATTACTACGCCAACTGGTCCAATTCTCATTTCTTCAAGATCGGCGACACTCTCGTTTTTAACTTTCAAGGGGGGCTTTCGAATGTGGTGGAAGTGACAAAGCAAGACTACGAGAGCTGCACAGCTTACAGACCCTTTAAAATCTTCAACAACGGTCCAGCAAATTTCACATTGTTGGAAAAAGGTGTCTTATATTTCATTACTAACGTCTCAAACTACTGTAGTTTAGGGCAGAAGATTTCCATTTCTGTTCACGAGTGCGCCTGCCCCGTTAATCAACCACCAAGTGCTCCAACACCGCCCCCTTCAGTTTCTCCACTTCCTGCTGCAGTTCCTCCATCTTCGGTTAGTCCGAATAGGTCTCAGCCTCCTGCAGCACAAGTTATAACTCCAGCAGGAGCTCCATCCCCATTAGGGTATAATGGTTCCTCCCCTAAGACTTATCCTCCTGTGAAATCTGCAGCATCAATGCTACATAAAGGAATGATGCTTGGTGTTCTTCATGGAATCTTTGGCTCGGTGGCGTTTGTTTTTTGGTCATCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPL1

Protein Analysis

231

Amino Acids

24.51

Weight (kDa)

8.51

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 127 3.3e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 533
AciI CCGC 1 cut(s) 446
AcsI RAATTY 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 438
AdeI CACNNNGTG 1 cut(s) 434
AfiI CCNNNNNNNGG 1 cut(s) 561
AgsI TTSAA 4 cut(s) 15, 184, 215, 295
AjnI CCWGG 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 95, 264, 272, 548
AluI AGCT 4 cut(s) 95, 264, 272, 548
Alw21I GWGCWC 2 cut(s) 439, 550
Alw26I GTCTC 3 cut(s) 108, 361, 513
ApeKI GCWGC 4 cut(s) 264, 473, 521, 608
ApoI RAATTY 1 cut(s) 310
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 3 cut(s) 129, 165, 302
AsuHPI GGTGA 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 227
AvaII GGWCC 3 cut(s) 129, 165, 302
BanII GRGCYC 1 cut(s) 550
BauI CACGAG 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 439, 550
BbvI GCAGC 4 cut(s) 251, 460, 533, 620
BccI CCATC 3 cut(s) 140, 493, 559
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 3 cut(s) 108, 361, 513
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 4 cut(s) 367, 474, 519, 606
BisI GCNGC 4 cut(s) 265, 474, 522, 609
BlsI GCNGC 4 cut(s) 266, 475, 523, 610
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 3 cut(s) 129, 165, 302
BmgT120I GGNCC 3 cut(s) 129, 165, 302
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 620, 624
BmuI ACTGGG 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 227
BsaI GGTCTC 2 cut(s) 108, 513
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse1I ACTGG 2 cut(s) 119, 167
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 3 cut(s) 132, 551, 686
BseLI CCNNNNNNNGG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 2 cut(s) 119, 167
BseXI GCAGC 4 cut(s) 251, 460, 533, 620
BsgI GTGCAG 1 cut(s) 250
BsiHKAI GWGCWC 2 cut(s) 439, 550
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 561
BsmAI GTCTC 3 cut(s) 108, 361, 513
BsmBI CGTCTC 1 cut(s) 361
Bso31I GGTCTC 2 cut(s) 108, 513
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 439, 550
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 1 cut(s) 446
BspCNI CTCAG 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 574
BspMAI CTGCAG 3 cut(s) 478, 523, 610
BspT104I TTCGAA 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 108, 513
BsrI ACTGG 2 cut(s) 119, 167
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 2 cut(s) 302, 368
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 510, 582
BstF5I GGATG 3 cut(s) 132, 551, 686
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 1 cut(s) 189
BstMAI GTCTC 3 cut(s) 108, 361, 513
BstMBI GATC 1 cut(s) 186
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 4 cut(s) 367, 474, 519, 606
BstV1I GCAGC 4 cut(s) 251, 460, 533, 620
BstXI CCANNNNNNTGG 1 cut(s) 126
BtsCI GGATG 3 cut(s) 132, 551, 686
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 412
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 129, 165, 302
CviAII CATG 1 cut(s) 650
CviJI RGCY 7 cut(s) 95, 223, 264, 272, 514, 548, 663
CviKI_1 RGCY 7 cut(s) 95, 223, 264, 272, 514, 548, 663
DdeI CTNAG 2 cut(s) 510, 582
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
DraI TTTAAA 1 cut(s) 286
DraIII CACNNNGTG 1 cut(s) 434
Ecl136II GAGCTC 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 2 cut(s) 108, 513
Eco47I GGWCC 3 cut(s) 129, 165, 302
Eco53kI GAGCTC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 550
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 1 cut(s) 653
FaiI YATR 6 cut(s) 72, 340, 533, 567, 624, 651
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 1 cut(s) 649
Fnu4HI GCNGC 4 cut(s) 265, 474, 522, 609
FokI GGATG 3 cut(s) 119, 538, 673
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 4 cut(s) 265, 474, 522, 609
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 409
GluI GCNGC 4 cut(s) 265, 474, 522, 609
GsuI CTGGAG 1 cut(s) 522
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 410
Hin1II CATG 1 cut(s) 653
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HinfI GANTC 2 cut(s) 61, 654
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 1 cut(s) 501
Hpy188III TCNNGA 2 cut(s) 184, 401
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 1 cut(s) 462
HpyCH4III ACNGT 2 cut(s) 302, 368
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 5 cut(s) 78, 267, 476, 521, 608
HpyF3I CTNAG 2 cut(s) 510, 582
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 1 cut(s) 653
HspAI GCGC 1 cut(s) 408
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 3 cut(s) 442, 545, 553
Lsp1109I GCAGC 4 cut(s) 251, 460, 533, 620
LweI GCATC 2 cut(s) 620, 624
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 19, 241
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 5 cut(s) 172, 283, 394, 480, 638
MhlI GDGCHC 2 cut(s) 439, 550
MluCI AATT 3 cut(s) 169, 310, 691
MmeI TCCRAC 2 cut(s) 303, 464
MnlI CCTC 5 cut(s) 147, 492, 525, 586, 603
MseI TTAA 4 cut(s) 207, 285, 420, 694
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
NdeII GATC 1 cut(s) 186
NlaIII CATG 1 cut(s) 653
NlaIV GGNNCC 1 cut(s) 574
NmuCI GTSAC 1 cut(s) 241
NspV TTCGAA 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PfeI GAWTC 2 cut(s) 61, 654
PkrI GCNGC 4 cut(s) 266, 475, 523, 610
PsiI TTATAA 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 3 cut(s) 129, 165, 302
PstI CTGCAG 3 cut(s) 478, 523, 610
SacI GAGCTC 1 cut(s) 550
SaqAI TTAA 4 cut(s) 207, 285, 420, 694
SatI GCNGC 4 cut(s) 265, 474, 522, 609
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 3 cut(s) 129, 165, 302
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 2 cut(s) 439, 550
SetI ASST 7 cut(s) 97, 266, 274, 334, 357, 509, 550
SfaNI GCATC 2 cut(s) 620, 624
SfcI CTRYAG 4 cut(s) 367, 474, 519, 606
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 3 cut(s) 129, 165, 302
Sse9I AATT 3 cut(s) 169, 310, 691
SsiI CCGC 1 cut(s) 446
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 2 cut(s) 302, 368
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 227
TasI AATT 3 cut(s) 169, 310, 691
TfiI GAWTC 2 cut(s) 61, 654
Tru1I TTAA 4 cut(s) 207, 285, 420, 694
Tru9I TTAA 4 cut(s) 207, 285, 420, 694
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 4 cut(s) 264, 473, 521, 608
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 334, 638
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 3 cut(s) 129, 165, 302
XapI RAATTY 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.