Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8522447.1

Orthogroup ID

OG0008000

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2885

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8522447.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

gtacgttcttccactattggctctggagtttgcaagttctttgggagcaaggagttcatgccaatgttttctgtggacttttctgcagttcctcaatgtttcacgctcatgcactccgaaatgcattttagatacatttttcggccaattcttcctgtaaattatctcaatgatgggcatgtagatgatgatgatgatgatgatgttaatcagtgtggcaatgacagtaatgagtgtgtagtcttgcatgaggttgatcacgccgaaaacagaccgttgcatccggttgtaaaagttcccaaattaggttgtagaagcacagtgtataggaatggtttaagttcacgaggtggtattcaaaagaggaggagttcattgaggaggaggagatctagaaatccttcttttgttgctttacggaaaccaaatggagccttggtttcagaattaaagaagaatggcctttccttttcttctgtagccttgaatcagaagcttaggaggtcagattcaacttgctctgcaacgaactcgaaagcagtgagttccaatgcggatagattggtgcaagatttagattcgacatgctgcactgcaaacttattggtctctgaatcagacagatgttatagggaagttggagtaaccattatgctagaaacctcttctgctggagagtggcttcttgtggtcaagaaagatggattaacgcgacttactcacaaagcagagaaagagaaagtaataaggccgggctctaaccgttttacacatgatataatctggtccccagatagtgatattttgaggctagagtttccggatcgaagtgagtggattactttcaaggagctttacagggaatgttctgatcgtaatgccaccattgagttcattcctgagcctgcttctgaccgtaatgccactgcaaaatccattcctgtgccaggggtgcgtgaagtcccaggttatgcagatagccacagttctccgtttctcataccagagtcatacatatctgtgaaggaagatgagttgtctagatcctttgcaaagaagacggcgaattatgacatggactctgaagatgaggaatggctgaagaagtctaacgtggactttgaagatcatgaacatgtttctgaggataaatttgaattaatggttgatgcctttgagaaggcattttacagtaaaccatatgatttctctgatggaattgctgctgctagtcattttctggacatggggaagagggatgtagtagaagctgtatatagttattggatgaataaaaggaagcagaaaaagtcgtcattgcttagggtcttccaggggcatcaagtgaaaagaccactgctggactccaagcctgttatgcgcaagagaagatcattcaaacgacagcctagtcaatttggcagaggaaaacaacctagtttcttgcaagcaatggctgcagaacaagatgctttgcaagaacagaatgctgtgcttaaagttgaagaggcgaaagcagcagcagacagatctgtggatttagctatccgtaaacgacagagagctcaggtacttatgcagaatgcagatttggcaacttacaaagctgcaatggcatttagaattgctgaagctgcccaagttcttggatcacccgatgctgctgcagtttatgtacttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPL1

Protein Analysis

561

Amino Acids

63.37

Weight (kDa)

8.38

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04670 AT5G04670
fragaria_vesca	FvH4_7g05840 FvH4_7g05840 FvH4_7g05840
malus_domestica	MD02G1255000.v1.1 MD07G1067000.v1.1
prunus_persica	Prupe.2G084200_v2.0.a1 Prupe.2G084200_v2.0.a1
pyrus_communis	pycom02g21480 pycom07g05120
rosa_chinensis	RchiOBHm_Chr1g0332951
rosa_laevigata	RLG00000029631
rosa_multiflora	Rmu_co8256169.1_g000001 Rmu_co8522447.1_g000001 Rmu_sc0000117.1_g000032 Rmu_sc0000813.1_g000011
rosa_roxburghii	Rroxscaffold_4G00317850
rosa_rugosa	Rorug01G0106100
rosa_samantha	Rh1AG129300 Rh1BG098500 Rh1CG123200 Rh1DG135100
rosa_wichuraiana	Rw1G010370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1410
Acc16I	TGCGCA	1 cut(s)	1382
AccII	CGCG	1 cut(s)	712
AccIII	TCCGGA	1 cut(s)	820
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	3 cut(s)	831, 1038, 1657
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	1151
AcuI	CTGAAG	3 cut(s)	1104, 1121, 1650
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	3 cut(s)	3, 1572, 1677
AfiI	CCNNNNNNNGG	2 cut(s)	305, 947
AflIII	ACRYGT	1 cut(s)	1135
AgsI	TTSAA	8 cut(s)	359, 487, 513, 847, 1124, 1157, 1399, 1505
AjnI	CCWGG	3 cut(s)	946, 964, 1332
AjuI	GAANNNNNNNTTGG	2 cut(s)	1574, 1606
AluBI	AGCT	7 cut(s)	496, 853, 1271, 1544, 1565, 1607, 1634
AluI	AGCT	7 cut(s)	496, 853, 1271, 1544, 1565, 1607, 1634
Alw21I	GWGCWC	1 cut(s)	1567
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	3 cut(s)	831, 1038, 1657
Aor13HI	TCCGGA	1 cut(s)	820
AoxI	GGCC	3 cut(s)	143, 460, 749
ApoI	RAATTY	1 cut(s)	1151
AseI	ATTAAT	1 cut(s)	1160
Asp700I	GAANNNNTTC	1 cut(s)	400
AspLEI	GCGC	1 cut(s)	1383
AspS9I	GGNCC	1 cut(s)	786
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	1 cut(s)	1644
AvaII	GGWCC	1 cut(s)	786
BanII	GRGCYC	2 cut(s)	758, 1567
BarI	GAAGNNNNNNTAC	2 cut(s)	1172, 1204
BauI	CACGAG	1 cut(s)	345
BbsI	GAAGAC	2 cut(s)	1064, 1321
Bbv12I	GWGCWC	1 cut(s)	1567
BccI	CCATC	3 cut(s)	167, 695, 1208
BceAI	ACGGC	1 cut(s)	1077
BcgI	CGANNNNNNTGC	4 cut(s)	513, 547, 1646, 1680
BciT130I	CCWGG	3 cut(s)	948, 966, 1334
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	7 cut(s)	393, 656, 812, 1041, 1230, 1410, 1437
BfmI	CTRYAG	4 cut(s)	84, 477, 1458, 1665
BglII	AGATCT	2 cut(s)	389, 1529
Bme1390I	CCNGG	4 cut(s)	753, 948, 966, 1334
Bme18I	GGWCC	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	786
BmiI	GGNNCC	2 cut(s)	433, 788
BmrFI	CCNGG	4 cut(s)	753, 948, 966, 1334
BmsI	GCATC	5 cut(s)	289, 1159, 1348, 1459, 1648
BpiI	GAAGAC	2 cut(s)	1064, 1321
BpmI	CTGGAG	2 cut(s)	45, 693
Bpu10I	CCTNAGC	4 cut(s)	497, 900, 1322, 1566
BpuMI	CCSGG	1 cut(s)	753
BsaBI	GATNNNNATC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	4 cut(s)	435, 947, 964, 1333
BsaWI	WCCGGW	2 cut(s)	283, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 947
Bse3DI	GCAATG	4 cut(s)	226, 1316, 1458, 1617
Bse8I	GATNNNNATC	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	820
BseBI	CCWGG	3 cut(s)	948, 966, 1334
BseDI	CCNNGG	4 cut(s)	435, 947, 964, 1333
BseGI	GGATG	3 cut(s)	280, 1264, 1293
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	305, 947
BseMI	GCAATG	4 cut(s)	226, 1316, 1458, 1617
BseMII	CTCAG	3 cut(s)	891, 1134, 1580
BseRI	GAGGAG	5 cut(s)	379, 382, 394, 397, 400
BsgI	GTGCAG	1 cut(s)	574
Bsh1236I	CGCG	1 cut(s)	712
BshFI	GGCC	3 cut(s)	145, 462, 751
BsiHKAI	GWGCWC	1 cut(s)	1567
BsiSI	CCGG	3 cut(s)	284, 752, 821
BslFI	GGGAC	2 cut(s)	772, 947
BslI	CCNNNNNNNGG	2 cut(s)	305, 947
BsmAI	GTCTC	1 cut(s)	613
BsmFI	GGGAC	2 cut(s)	772, 947
BsmI	GAATGC	2 cut(s)	1492, 1588
BsnI	GGCC	3 cut(s)	145, 462, 751
Bso31I	GGTCTC	1 cut(s)	613
Bsp1286I	GDGCHC	2 cut(s)	758, 1567
Bsp13I	TCCGGA	1 cut(s)	820
Bsp143I	GATC	9 cut(s)	256, 389, 823, 871, 1043, 1126, 1391, 1529, 1649
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	3 cut(s)	145, 462, 751
BspCNI	CTCAG	3 cut(s)	892, 1135, 1579
BspEI	TCCGGA	1 cut(s)	820
BspFNI	CGCG	1 cut(s)	712
BspHI	TCATGA	1 cut(s)	1129
BspLI	GGNNCC	2 cut(s)	433, 788
BspMAI	CTGCAG	3 cut(s)	88, 1462, 1669
BspPI	GGATC	3 cut(s)	831, 1038, 1657
BspTNI	GGTCTC	1 cut(s)	613
BsrDI	GCAATG	4 cut(s)	226, 1316, 1458, 1617
BssECI	CCNNGG	4 cut(s)	435, 947, 964, 1333
BssMI	GATC	9 cut(s)	256, 389, 823, 871, 1043, 1126, 1391, 1529, 1649
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	3 cut(s)	948, 966, 1334
Bst4CI	ACNGT	7 cut(s)	227, 276, 322, 764, 917, 986, 1193
Bst6I	CTCTTC	3 cut(s)	670, 1247, 1500
BstAPI	GCANNNNNTGC	1 cut(s)	1457
BstC8I	GCNNGC	2 cut(s)	906, 1449
BstDEI	CTNAG	5 cut(s)	497, 900, 1143, 1322, 1566
BstENI	CCTNNNNNAGG	1 cut(s)	945
BstF5I	GGATG	3 cut(s)	280, 1264, 1293
BstFNI	CGCG	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	1383
BstKTI	GATC	9 cut(s)	259, 392, 826, 874, 1046, 1129, 1394, 1532, 1652
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	9 cut(s)	256, 389, 823, 871, 1043, 1126, 1391, 1529, 1649
BstMWI	GCNNNNNNNGC	7 cut(s)	952, 1378, 1457, 1517, 1592, 1613, 1634
BstNI	CCWGG	3 cut(s)	948, 966, 1334
BstNSI	RCATGY	3 cut(s)	182, 588, 1139
BstSCI	CCNGG	4 cut(s)	751, 946, 964, 1332
BstSFI	CTRYAG	4 cut(s)	84, 477, 1458, 1665
BstUI	CGCG	1 cut(s)	712
BstV2I	GAAGAC	2 cut(s)	1064, 1321
BstX2I	RGATCY	3 cut(s)	389, 1043, 1529
BstXI	CCANNNNNNTGG	1 cut(s)	1646
BstYI	RGATCY	3 cut(s)	389, 1043, 1529
BsuRI	GGCC	3 cut(s)	145, 462, 751
BtsCI	GGATG	3 cut(s)	280, 1264, 1293
BtsI	GCAGTG	4 cut(s)	546, 591, 924, 1355
BtsIMutI	CAGTG	6 cut(s)	218, 327, 546, 591, 924, 1355
Cac8I	GCNNGC	2 cut(s)	906, 1449
CciI	TCATGA	1 cut(s)	1129
CfoI	GCGC	1 cut(s)	1383
Cfr13I	GGNCC	1 cut(s)	786
Csp6I	GTAC	3 cut(s)	2, 1571, 1676
CviQI	GTAC	3 cut(s)	2, 1571, 1676
DdeI	CTNAG	5 cut(s)	497, 900, 1143, 1322, 1566
DpnI	GATC	9 cut(s)	258, 391, 825, 873, 1045, 1128, 1393, 1531, 1651
DpnII	GATC	9 cut(s)	256, 389, 823, 871, 1043, 1126, 1391, 1529, 1649
DraIII	CACNNNGTG	1 cut(s)	350
DrdI	GACNNNNNNGTC	1 cut(s)	1410
DseDI	GACNNNNNNGTC	1 cut(s)	1410
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	3 cut(s)	670, 1247, 1500
EarI	CTCTTC	3 cut(s)	670, 1247, 1500
Ecl136II	GAGCTC	1 cut(s)	1565
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	2 cut(s)	758, 1567
Eco31I	GGTCTC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	1565
Eco57I	CTGAAG	3 cut(s)	1104, 1121, 1650
EcoICRI	GAGCTC	1 cut(s)	1565
EcoNI	CCTNNNNNAGG	1 cut(s)	945
EcoRII	CCWGG	3 cut(s)	946, 964, 1332
EcoT14I	CCWWGG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	126
EcoT38I	GRGCYC	2 cut(s)	758, 1567
ErhI	CCWWGG	1 cut(s)	435
FaqI	GGGAC	2 cut(s)	772, 947
FauNDI	CATATG	1 cut(s)	1201
FbaI	TGATCA	1 cut(s)	256
FokI	GGATG	3 cut(s)	267, 1271, 1300
FriOI	GRGCYC	2 cut(s)	758, 1567
FspBI	CTAG	7 cut(s)	393, 656, 812, 1041, 1230, 1410, 1437
FspI	TGCGCA	1 cut(s)	1382
GlaI	GCGC	1 cut(s)	1382
GsuI	CTGGAG	2 cut(s)	45, 693
HaeIII	GGCC	3 cut(s)	145, 462, 751
HapII	CCGG	3 cut(s)	284, 752, 821
HhaI	GCGC	1 cut(s)	1383
Hin6I	GCGC	1 cut(s)	1381
HinP1I	GCGC	1 cut(s)	1381
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	7 cut(s)	487, 509, 578, 614, 1007, 1079, 1364
HpaII	CCGG	3 cut(s)	284, 752, 821
HphI	GGTGA	1 cut(s)	1644
Hpy166II	GTNNAC	5 cut(s)	76, 344, 1117, 1196, 1553
Hpy188III	TCNNGA	9 cut(s)	24, 345, 393, 694, 821, 899, 1041, 1130, 1241
Hpy8I	GTNNAC	5 cut(s)	76, 344, 1117, 1196, 1553
HpyAV	CCTTC	3 cut(s)	411, 1018, 1174
HpyCH4III	ACNGT	7 cut(s)	227, 276, 322, 764, 917, 986, 1193
HpyCH4IV	ACGT	2 cut(s)	4, 1113
HpyF10VI	GCNNNNNNNGC	7 cut(s)	952, 1378, 1457, 1517, 1592, 1613, 1634
HpyF3I	CTNAG	5 cut(s)	497, 900, 1143, 1322, 1566
HpySE526I	ACGT	2 cut(s)	4, 1113
HspAI	GCGC	1 cut(s)	1381
Kpn2I	TCCGGA	1 cut(s)	820
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	9 cut(s)	256, 389, 823, 871, 1043, 1126, 1391, 1529, 1649
LmnI	GCTCC	3 cut(s)	45, 431, 850
LweI	GCATC	5 cut(s)	289, 1159, 1348, 1459, 1648
MaeI	CTAG	7 cut(s)	393, 656, 812, 1041, 1230, 1410, 1437
MaeII	ACGT	2 cut(s)	4, 1113
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	9 cut(s)	258, 391, 825, 873, 1045, 1128, 1393, 1531, 1651
MboI	GATC	9 cut(s)	256, 389, 823, 871, 1043, 1126, 1391, 1529, 1649
MflI	RGATCY	3 cut(s)	389, 1043, 1529
MhlI	GDGCHC	2 cut(s)	758, 1567
MlyI	GAGTC	3 cut(s)	1016, 1073, 1358
MmeI	TCCRAC	1 cut(s)	619
Mph1103I	ATGCAT	1 cut(s)	126
MroI	TCCGGA	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	6 cut(s)	207, 338, 449, 707, 1160, 1497
MslI	CAYNNNNRTG	6 cut(s)	62, 107, 183, 941, 1019, 1134
MspI	CCGG	3 cut(s)	284, 752, 821
MspR9I	CCNGG	4 cut(s)	753, 948, 966, 1334
Mva1269I	GAATGC	2 cut(s)	1492, 1588
MvaI	CCWGG	3 cut(s)	948, 966, 1334
MvnI	CGCG	1 cut(s)	712
MwoI	GCNNNNNNNGC	7 cut(s)	952, 1378, 1457, 1517, 1592, 1613, 1634
NciI	CCSGG	1 cut(s)	753
NdeI	CATATG	1 cut(s)	1201
NdeII	GATC	9 cut(s)	256, 389, 823, 871, 1043, 1126, 1391, 1529, 1649
NlaIV	GGNNCC	2 cut(s)	433, 788
NsbI	TGCGCA	1 cut(s)	1382
NsiI	ATGCAT	1 cut(s)	126
NspI	RCATGY	3 cut(s)	182, 588, 1139
PagI	TCATGA	1 cut(s)	1129
PciI	ACATGT	1 cut(s)	1135
PctI	GAATGC	2 cut(s)	1492, 1588
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	4 cut(s)	487, 509, 578, 614
PleI	GAGTC	3 cut(s)	1015, 1073, 1358
PpsI	GAGTC	3 cut(s)	1015, 1073, 1358
PscI	ACATGT	1 cut(s)	1135
PshBI	ATTAAT	1 cut(s)	1160
Psp124BI	GAGCTC	1 cut(s)	1567
Psp6I	CCWGG	3 cut(s)	946, 964, 1332
PspGI	CCWGG	3 cut(s)	946, 964, 1332
PspN4I	GGNNCC	2 cut(s)	433, 788
PspPI	GGNCC	1 cut(s)	786
PstI	CTGCAG	3 cut(s)	88, 1462, 1669
PsuI	RGATCY	3 cut(s)	389, 1043, 1529
RsaI	GTAC	3 cut(s)	3, 1572, 1677
RsaNI	GTAC	3 cut(s)	2, 1571, 1676
RseI	CAYNNNNRTG	6 cut(s)	62, 107, 183, 941, 1019, 1134
SacI	GAGCTC	1 cut(s)	1567
SaqAI	TTAA	6 cut(s)	207, 338, 449, 707, 1160, 1497
Sau3AI	GATC	9 cut(s)	256, 389, 823, 871, 1043, 1126, 1391, 1529, 1649
Sau96I	GGNCC	1 cut(s)	786
SchI	GAGTC	3 cut(s)	1016, 1073, 1358
ScrFI	CCNGG	4 cut(s)	753, 948, 966, 1334
SduI	GDGCHC	2 cut(s)	758, 1567
SfaNI	GCATC	5 cut(s)	289, 1159, 1348, 1459, 1648
SfcI	CTRYAG	4 cut(s)	84, 477, 1458, 1665
SinI	GGWCC	1 cut(s)	786
SmiMI	CAYNNNNRTG	6 cut(s)	62, 107, 183, 941, 1019, 1134
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	7 cut(s)	393, 656, 812, 1041, 1230, 1410, 1437
SstI	GAGCTC	1 cut(s)	1567
StyD4I	CCNGG	4 cut(s)	751, 946, 964, 1332
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	7 cut(s)	227, 276, 322, 764, 917, 986, 1193
TaiI	ACGT	2 cut(s)	7, 1116
TaqI	TCGA	3 cut(s)	533, 581, 826
TatI	WGTACW	1 cut(s)	1675
TfiI	GAWTC	4 cut(s)	487, 509, 578, 614
Tru1I	TTAA	6 cut(s)	207, 338, 449, 707, 1160, 1497
Tru9I	TTAA	6 cut(s)	207, 338, 449, 707, 1160, 1497
TscAI	CASTG	6 cut(s)	218, 327, 546, 598, 931, 1362
TspDTI	ATGAA	5 cut(s)	46, 363, 883, 1146, 1304
TspGWI	ACGGA	3 cut(s)	433, 981, 1538
TspRI	CASTG	6 cut(s)	218, 327, 546, 598, 931, 1362
VpaK11BI	GGWCC	1 cut(s)	786
VspI	ATTAAT	1 cut(s)	1160
XagI	CCTNNNNNAGG	1 cut(s)	945
XapI	RAATTY	1 cut(s)	1151
XbaI	TCTAGA	2 cut(s)	392, 1040
XceI	RCATGY	3 cut(s)	182, 588, 1139
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	7 cut(s)	393, 656, 812, 1041, 1230, 1410, 1437
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.