Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8263641.1

Orthogroup ID

OG0009744

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 738

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8263641.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 697 bp

tggaagaggattcatagcgcgcgacatcacattcgagaacacagcaggacccgagaaacacatggcagtggcactacgatccgactcagacctctcggtcttttaccggtgtgagtttcggggataccaggacacactatacacacactctatgcgtcaattctatcgagactgcaaaatcagcggcactgttgatttcatcttcggtgacggcacagttgtgttccagaactgccaaatcctagccagacaagccttgccaaaccaaaagaacagcatcacagcccatggccgaaagtacgtagatgagccgacaggcttttcgatccaattctgcaacatatctgcacatccagacttgttagccaccccggttaactctagcacacctacataccttggtagaccatggaaacaattttcaagaactataatcatgcagtccttcatgagcagtatcataaagccagaagggtggctagagtggaatggtagcatgtttttggattcattgttctatggagagtacatgaattacgggcctggagcgggcctcgggagccgggttacctggccgggatatcaaaagtttaacgagtccgggcaggccaagaactatacagtgtccgagtttattgaaggaaacttgtggttgccctctactggtgtcaaatatactgcaggctttggggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0016787 GO:0016788 GO:0030234 GO:0030312 GO:0030599 GO:0042742 GO:0043086 GO:0043207 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098542 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

231

Amino Acids

26.03

Weight (kDa)

7.82

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43270 AT4G33220 AT4G33220
fragaria_vesca	FvH4_1g09610
malus_domestica	MD02G1104600.v1.1 MD02G1105100.v1.1 MD15G1224900.v1.1
prunus_persica	Prupe.7G190300_v2.0.a1
pyrus_communis	pycom02g08260
rosa_chinensis	RchiOBHm_Chr2g0096461
rosa_laevigata	RLG00000016641
rosa_multiflora	Rmu_co8263641.1_g000001 Rmu_sc0004096.1_g000019 Rmu_sc0029740.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145620
rosa_rugosa	Rorug02G0057900
rosa_samantha	Rh2AG104800 Rh2BG107000 Rh2CG108800 Rh2DG108000
rosa_wichuraiana	Rw2G008100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	96
AccBSI	CCGCTC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	404
AccII	CGCG	2 cut(s)	20, 22
AciI	CCGC	2 cut(s)	184, 549
AclWI	GGATC	2 cut(s)	73, 320
AcoI	YGGCCR	2 cut(s)	290, 573
AfaI	GTAC	2 cut(s)	300, 528
AfiI	CCNNNNNNNGG	2 cut(s)	549, 663
AgeI	ACCGGT	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	424, 639
AjnI	CCWGG	3 cut(s)	127, 542, 570
AleI	CACNNNNGTG	1 cut(s)	219
AloI	GAACNNNNNNTCC	2 cut(s)	498, 530
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	73, 320
Ama87I	CYCGRG	2 cut(s)	51, 555
AoxI	GGCC	5 cut(s)	290, 540, 551, 573, 607
ArsI	GACNNNNNNTTYG	4 cut(s)	15, 47, 305, 337
AsiGI	ACCGGT	1 cut(s)	106
AspLEI	GCGC	2 cut(s)	20, 22
AspS9I	GGNCC	3 cut(s)	48, 540, 551
AsuC2I	CCSGG	4 cut(s)	372, 564, 577, 602
AsuHPI	GGTGA	1 cut(s)	219
AvaI	CYCGRG	2 cut(s)	51, 555
AvaII	GGWCC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	3 cut(s)	129, 544, 572
BciVI	GTATCC	1 cut(s)	117
BcnI	CCSGG	4 cut(s)	372, 564, 577, 602
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	3 cut(s)	243, 382, 480
BfmI	CTRYAG	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	7 cut(s)	129, 372, 544, 564, 572, 577, 602
Bme18I	GGWCC	1 cut(s)	48
BmeT110I	CYCGRG	2 cut(s)	51, 555
BmgT120I	GGNCC	3 cut(s)	48, 540, 551
BmiI	GGNNCC	2 cut(s)	50, 561
BmrFI	CCNGG	7 cut(s)	129, 372, 544, 564, 572, 577, 602
BmsI	GCATC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	538, 570
BpmI	CTGGAG	1 cut(s)	565
BpuMI	CCSGG	4 cut(s)	372, 564, 577, 602
BsaAI	YACGTR	1 cut(s)	302
BsaJI	CCNNGG	5 cut(s)	287, 370, 398, 408, 554
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 663
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	668
BseBI	CCWGG	3 cut(s)	129, 544, 572
BseDI	CCNNGG	5 cut(s)	287, 370, 398, 408, 554
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	2 cut(s)	549, 663
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	668
BsePI	GCGCGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	20, 22
BshFI	GGCC	5 cut(s)	292, 542, 553, 575, 609
BshTI	ACCGGT	1 cut(s)	106
BsiHKCI	CYCGRG	2 cut(s)	51, 555
BsiSI	CCGG	5 cut(s)	107, 372, 563, 576, 601
BslI	CCNNNNNNNGG	2 cut(s)	549, 663
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	5 cut(s)	292, 542, 553, 575, 609
BsoBI	CYCGRG	2 cut(s)	51, 555
Bsp143I	GATC	2 cut(s)	78, 325
Bsp19I	CCATGG	2 cut(s)	287, 408
BspACI	CCGC	2 cut(s)	184, 549
BspANI	GGCC	5 cut(s)	292, 542, 553, 575, 609
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	20, 22
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	50, 561
BspMAI	CTGCAG	1 cut(s)	683
BspPI	GGATC	2 cut(s)	73, 320
BsrBI	CCGCTC	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	5 cut(s)	287, 370, 398, 408, 554
BssHII	GCGCGC	1 cut(s)	18
BssMI	GATC	2 cut(s)	78, 325
BssT1I	CCWWGG	3 cut(s)	287, 398, 408
Bst2UI	CCWGG	3 cut(s)	129, 544, 572
Bst4CI	ACNGT	3 cut(s)	191, 218, 623
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	4 cut(s)	20, 551, 607, 683
BstDEI	CTNAG	1 cut(s)	86
BstDSI	CCRYGG	2 cut(s)	287, 408
BstEII	GGTNACC	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	2 cut(s)	20, 22
BstHHI	GCGC	2 cut(s)	20, 22
BstKTI	GATC	2 cut(s)	81, 328
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	78, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 252, 559
BstNI	CCWGG	3 cut(s)	129, 544, 572
BstNSI	RCATGY	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	7 cut(s)	127, 370, 542, 562, 570, 575, 600
BstSFI	CTRYAG	1 cut(s)	679
BstSNI	TACGTA	1 cut(s)	302
BstUI	CGCG	2 cut(s)	20, 22
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuI	GTATCC	1 cut(s)	117
BsuRI	GGCC	5 cut(s)	292, 542, 553, 575, 609
BtgI	CCRYGG	2 cut(s)	287, 408
BtsCI	GGATG	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	3 cut(s)	73, 187, 628
Cac8I	GCNNGC	4 cut(s)	20, 551, 607, 683
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	20, 22
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	48, 540, 551
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	299, 527
CspAI	ACCGGT	1 cut(s)	106
CviAII	CATG	7 cut(s)	62, 288, 409, 437, 449, 497, 530
CviQI	GTAC	2 cut(s)	299, 527
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	80, 327
DpnII	GATC	2 cut(s)	78, 325
DrdI	GACNNNNNNGTC	1 cut(s)	96
DseDI	GACNNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	2 cut(s)	290, 573
Eco105I	TACGTA	1 cut(s)	302
Eco130I	CCWWGG	3 cut(s)	287, 398, 408
Eco32I	GATATC	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	48
Eco88I	CYCGRG	2 cut(s)	51, 555
Eco91I	GGTNACC	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	48
EcoO65I	GGTNACC	1 cut(s)	566
EcoRII	CCWGG	3 cut(s)	127, 542, 570
EcoRV	GATATC	1 cut(s)	582
EcoT14I	CCWWGG	3 cut(s)	287, 398, 408
ErhI	CCWWGG	3 cut(s)	287, 398, 408
FaeI	CATG	7 cut(s)	65, 291, 412, 440, 452, 500, 533
FatI	CATG	7 cut(s)	61, 287, 408, 436, 448, 496, 529
FauI	CCCGC	1 cut(s)	542
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	3 cut(s)	243, 382, 480
GlaI	GCGC	2 cut(s)	19, 21
GluI	GCNGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	565
HaeIII	GGCC	5 cut(s)	292, 542, 553, 575, 609
HapII	CCGG	5 cut(s)	107, 372, 563, 576, 601
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	2 cut(s)	20, 22
Hin1II	CATG	7 cut(s)	65, 291, 412, 440, 452, 500, 533
Hin6I	GCGC	2 cut(s)	18, 20
HinP1I	GCGC	2 cut(s)	18, 20
HincII	GTYRAC	1 cut(s)	377
HindII	GTYRAC	1 cut(s)	377
HinfI	GANTC	4 cut(s)	10, 84, 507, 597
HpaI	GTTAAC	1 cut(s)	377
HpaII	CCGG	5 cut(s)	107, 372, 563, 576, 601
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	2 cut(s)	377, 405
Hpy188I	TCNGA	3 cut(s)	83, 89, 629
Hpy188III	TCNNGA	7 cut(s)	35, 168, 227, 354, 424, 449, 557
Hpy8I	GTNNAC	2 cut(s)	377, 405
HpyAV	CCTTC	3 cut(s)	455, 465, 633
HpyCH4III	ACNGT	3 cut(s)	191, 218, 623
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	5 cut(s)	175, 337, 348, 440, 681
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 252, 559
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	7 cut(s)	65, 291, 412, 440, 452, 500, 533
HspAI	GCGC	2 cut(s)	18, 20
KspAI	GTTAAC	1 cut(s)	377
Kzo9I	GATC	2 cut(s)	78, 325
LmnI	GCTCC	2 cut(s)	546, 559
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	3 cut(s)	243, 382, 480
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	207, 566
MalI	GATC	2 cut(s)	80, 327
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	2 cut(s)	78, 325
MboII	GAAGA	2 cut(s)	16, 194
MluCI	AATT	4 cut(s)	159, 330, 417, 533
MlyI	GAGTC	2 cut(s)	78, 606
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	102, 564, 668
MseI	TTAA	3 cut(s)	376, 592, 695
MslI	CAYNNNNRTG	2 cut(s)	66, 219
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	5 cut(s)	107, 372, 563, 576, 601
MspR9I	CCNGG	7 cut(s)	129, 372, 544, 564, 572, 577, 602
MvaI	CCWGG	3 cut(s)	129, 544, 572
MvnI	CGCG	2 cut(s)	20, 22
MwoI	GCNNNNNNNGC	3 cut(s)	181, 252, 559
NciI	CCSGG	4 cut(s)	372, 564, 577, 602
NcoI	CCATGG	2 cut(s)	287, 408
NdeII	GATC	2 cut(s)	78, 325
NlaIII	CATG	7 cut(s)	65, 291, 412, 440, 452, 500, 533
NlaIV	GGNNCC	2 cut(s)	50, 561
NmuCI	GTSAC	1 cut(s)	207
NspI	RCATGY	1 cut(s)	500
OliI	CACNNNNGTG	1 cut(s)	219
PagI	TCATGA	1 cut(s)	448
PauI	GCGCGC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	10, 507
PinAI	ACCGGT	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	2 cut(s)	78, 605
PpsI	GAGTC	2 cut(s)	78, 605
Ppu21I	YACGTR	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	48
Psp6I	CCWGG	3 cut(s)	127, 542, 570
PspEI	GGTNACC	1 cut(s)	566
PspGI	CCWGG	3 cut(s)	127, 542, 570
PspN4I	GGNNCC	2 cut(s)	50, 561
PspPI	GGNCC	3 cut(s)	48, 540, 551
PspPPI	RGGWCCY	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	683
PteI	GCGCGC	1 cut(s)	18
RsaI	GTAC	2 cut(s)	300, 528
RsaNI	GTAC	2 cut(s)	299, 527
RseI	CAYNNNNRTG	2 cut(s)	66, 219
SaqAI	TTAA	3 cut(s)	376, 592, 695
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	78, 325
Sau96I	GGNCC	3 cut(s)	48, 540, 551
SchI	GAGTC	2 cut(s)	78, 606
ScrFI	CCNGG	7 cut(s)	129, 372, 544, 564, 572, 577, 602
SetI	ASST	5 cut(s)	94, 304, 392, 400, 573
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	679
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	66, 219
SnaBI	TACGTA	1 cut(s)	302
Sse9I	AATT	4 cut(s)	159, 330, 417, 533
SsiI	CCGC	2 cut(s)	184, 549
SspMI	CTAG	3 cut(s)	243, 382, 480
StyD4I	CCNGG	7 cut(s)	127, 370, 542, 562, 570, 575, 600
StyI	CCWWGG	3 cut(s)	287, 398, 408
TaaI	ACNGT	3 cut(s)	191, 218, 623
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	34, 167, 324
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	4 cut(s)	159, 330, 417, 533
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	10, 507
Tru1I	TTAA	3 cut(s)	376, 592, 695
Tru9I	TTAA	3 cut(s)	376, 592, 695
TscAI	CASTG	3 cut(s)	73, 194, 628
TseFI	GTSAC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	4 cut(s)	188, 437, 499, 546
TspRI	CASTG	3 cut(s)	73, 194, 628
VpaK11BI	GGWCC	1 cut(s)	48
XceI	RCATGY	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	3 cut(s)	243, 382, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.