Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029740.1

Orthogroup ID

OG0009744

Physical Location & Seq

Genomic Coordinates Forward (+)

7367 .. 9064

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029740.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggcttccgatccattgtggatgggaaagtttctactagtgttagtactcttgtcgttcccatttattcactgtgaaaatatcacaaacacgatacagtccgagtgtttgaaggtttccaactcggagtttgcggggtcgattgtgaacaccattgatgttatgcagcaggtggtgtctattctttccagcgttgctaagggtttcggggatttccggctttcgaatgccatcgacgactgtctggatttgatggatagctcggctgatgagttgagctggactctctctgctacccagaatcagaatggcaaacataacagcactgggaatttgagttctgatctgagaacatggctgagtgctacactgtttaaccaggacacatgcagtgatggatttgatggcaccaacggcattgtcaaagacttggtgtccggtagccttaaccaaataacttccttggtcctagaactactcggccaagtgcacccagtttcggatcagcacgagtcaaatggccaaaccccagcatggtttagatccgaggaccgcaaactgctacaagcaaatggaatgcctgtagacgttgtggtagctcaggatggaaccgggaacttcacaaatatcacctccgcgattttatcagtaccggattacagcttgaaacgctacgtgatttacgtcaagaaaggggtgtacaaggagtatgtggagatcaagaagaagaaatggaacataatgatgatcggagatggcatggatgctactgtaatcagtgggaatcataattatgtggatggttggaccacatttcgctctgcaacttttggtaacactctttgcatcatgttcgtcattagactcttctattttgtttccttaatgaacaaacacgggaaatttggagatctcttcaagttttgctgttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0016787 GO:0016788 GO:0030234 GO:0030312 GO:0030599 GO:0042742 GO:0043086 GO:0043207 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098542 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

311

Amino Acids

34.43

Weight (kDa)

5.34

Isoelectric Point (pI)

28.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43270 AT4G33220 AT4G33220
fragaria_vesca	FvH4_1g09610
malus_domestica	MD02G1104600.v1.1 MD02G1105100.v1.1 MD15G1224900.v1.1
prunus_persica	Prupe.7G190300_v2.0.a1
pyrus_communis	pycom02g08260
rosa_chinensis	RchiOBHm_Chr2g0096461
rosa_laevigata	RLG00000016641
rosa_multiflora	Rmu_co8263641.1_g000001 Rmu_sc0004096.1_g000019 Rmu_sc0029740.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145620
rosa_rugosa	Rorug02G0057900
rosa_samantha	Rh2AG104800 Rh2BG107000 Rh2CG108800 Rh2DG108000
rosa_wichuraiana	Rw2G008100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	585
AccII	CGCG	1 cut(s)	638
AciI	CCGC	3 cut(s)	134, 553, 636
AclWI	GGATC	3 cut(s)	5, 510, 537
AcoI	YGGCCR	2 cut(s)	481, 520
AcsI	RAATTY	2 cut(s)	331, 902
AfaI	GTAC	3 cut(s)	48, 651, 701
AfiI	CCNNNNNNNGG	2 cut(s)	499, 534
AgsI	TTSAA	3 cut(s)	112, 667, 919
AhdI	GACNNNNNGTC	1 cut(s)	433
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	378
AloI	GAACNNNNNNTCC	2 cut(s)	322, 354
AluBI	AGCT	4 cut(s)	261, 279, 599, 663
AluI	AGCT	4 cut(s)	261, 279, 599, 663
Alw21I	GWGCWC	1 cut(s)	492
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	3 cut(s)	5, 510, 537
AoxI	GGCC	2 cut(s)	481, 520
ApaLI	GTGCAC	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	331, 902
AspS9I	GGNCC	3 cut(s)	466, 550, 807
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	1 cut(s)	622
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	3 cut(s)	466, 550, 807
BaeGI	GKGCMC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	407
BauI	CACGAG	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	8 cut(s)	16, 239, 247, 389, 398, 599, 749, 794
BceAI	ACGGC	1 cut(s)	430
BcgI	CGANNNNNNTGC	2 cut(s)	835, 869
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	613
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	2 cut(s)	38, 470
BfmI	CTRYAG	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	160
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	380, 613
Bme18I	GGWCC	3 cut(s)	466, 550, 807
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	466, 550, 807
BmiI	GGNNCC	2 cut(s)	409, 610
BmrFI	CCNGG	2 cut(s)	380, 613
BmrI	ACTGGG	2 cut(s)	336, 488
BmsI	GCATC	2 cut(s)	754, 855
BmuI	ACTGGG	2 cut(s)	336, 488
BoxI	GACNNNNGTC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
Bpu10I	CCTNAGC	2 cut(s)	198, 600
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	613
BsaAI	YACGTR	1 cut(s)	676
BsaJI	CCNNGG	2 cut(s)	462, 546
BsaWI	WCCGGW	2 cut(s)	437, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 534
Bse1I	ACTGG	2 cut(s)	331, 494
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	462, 546
BseGI	GGATG	4 cut(s)	27, 610, 769, 805
BseLI	CCNNNNNNNGG	2 cut(s)	499, 534
BseMII	CTCAG	3 cut(s)	338, 350, 614
BseNI	ACTGG	2 cut(s)	331, 494
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	2 cut(s)	483, 522
BshNI	GGYRCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	4 cut(s)	217, 438, 612, 653
BslI	CCNNNNNNNGG	2 cut(s)	499, 534
BsmI	GAATGC	2 cut(s)	232, 582
BsnI	GGCC	2 cut(s)	483, 522
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	7 cut(s)	10, 343, 502, 542, 717, 747, 910
BspACI	CCGC	3 cut(s)	134, 553, 636
BspANI	GGCC	2 cut(s)	483, 522
BspCNI	CTCAG	3 cut(s)	339, 351, 613
BspFNI	CGCG	1 cut(s)	638
BspLI	GGNNCC	2 cut(s)	409, 610
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	3 cut(s)	5, 510, 537
BspT104I	TTCGAA	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	407
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	331, 494
BssECI	CCNNGG	2 cut(s)	462, 546
BssMI	GATC	7 cut(s)	10, 343, 502, 542, 717, 747, 910
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	5 cut(s)	74, 99, 242, 372, 772
Bst6I	CTCTTC	2 cut(s)	872, 920
BstAUI	TGTACA	1 cut(s)	699
BstBAI	YACGTR	1 cut(s)	676
BstBI	TTCGAA	1 cut(s)	224
BstDEI	CTNAG	5 cut(s)	198, 347, 359, 600, 933
BstF5I	GGATG	4 cut(s)	27, 610, 769, 805
BstFNI	CGCG	1 cut(s)	638
BstKTI	GATC	7 cut(s)	13, 346, 505, 545, 720, 750, 913
BstMBI	GATC	7 cut(s)	10, 343, 502, 542, 717, 747, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 669
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	390
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	378, 611
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	492
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	2 cut(s)	542, 910
BstYI	RGATCY	2 cut(s)	542, 910
BsuRI	GGCC	2 cut(s)	483, 522
BtsCI	GGATG	4 cut(s)	27, 610, 769, 805
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	5 cut(s)	70, 324, 368, 397, 784
BveI	ACCTGC	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	466, 550, 807
Csp6I	GTAC	3 cut(s)	47, 650, 700
CviAII	CATG	5 cut(s)	354, 387, 534, 760, 850
CviQI	GTAC	3 cut(s)	47, 650, 700
DdeI	CTNAG	5 cut(s)	198, 347, 359, 600, 933
DpnI	GATC	7 cut(s)	12, 345, 504, 544, 719, 749, 912
DpnII	GATC	7 cut(s)	10, 343, 502, 542, 717, 747, 910
DriI	GACNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	481, 520
Eam1104I	CTCTTC	2 cut(s)	872, 920
Eam1105I	GACNNNNNGTC	1 cut(s)	433
EarI	CTCTTC	2 cut(s)	872, 920
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	3 cut(s)	466, 550, 807
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	5 cut(s)	357, 390, 537, 763, 853
FatI	CATG	5 cut(s)	353, 386, 533, 759, 849
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	4 cut(s)	34, 617, 776, 812
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	2 cut(s)	38, 470
GluI	GCNGC	1 cut(s)	167
GsaI	CCCAGC	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	483, 522
HapII	CCGG	4 cut(s)	217, 438, 612, 653
Hin1II	CATG	5 cut(s)	357, 390, 537, 763, 853
HinfI	GANTC	5 cut(s)	283, 301, 512, 784, 864
HpaII	CCGG	4 cut(s)	217, 438, 612, 653
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	4 cut(s)	148, 490, 586, 700
Hpy188I	TCNGA	9 cut(s)	10, 103, 127, 306, 343, 348, 502, 547, 752
Hpy188III	TCNNGA	4 cut(s)	245, 602, 688, 721
Hpy8I	GTNNAC	4 cut(s)	148, 490, 586, 700
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	5 cut(s)	74, 99, 242, 372, 772
HpyCH4IV	ACGT	3 cut(s)	588, 675, 684
HpyCH4V	TGCA	5 cut(s)	166, 390, 490, 824, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 669
HpyF3I	CTNAG	5 cut(s)	198, 347, 359, 600, 933
HpySE526I	ACGT	3 cut(s)	588, 675, 684
Hsp92II	CATG	5 cut(s)	357, 390, 537, 763, 853
Kzo9I	GATC	7 cut(s)	10, 343, 502, 542, 717, 747, 910
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	754, 855
MaeI	CTAG	2 cut(s)	38, 470
MaeII	ACGT	3 cut(s)	588, 675, 684
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	7 cut(s)	12, 345, 504, 544, 719, 749, 912
MboI	GATC	7 cut(s)	10, 343, 502, 542, 717, 747, 910
MboII	GAAGA	4 cut(s)	736, 739, 859, 907
MflI	RGATCY	2 cut(s)	542, 910
MhlI	GDGCHC	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	3 cut(s)	331, 790, 902
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	3 cut(s)	277, 521, 858
MmeI	TCCRAC	2 cut(s)	144, 785
MnlI	CCTC	2 cut(s)	541, 643
Mox20I	TGGCCA	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	3 cut(s)	375, 447, 884
MslI	CAYNNNNRTG	2 cut(s)	743, 792
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	4 cut(s)	217, 438, 612, 653
MspR9I	CCNGG	2 cut(s)	380, 613
Mva1269I	GAATGC	2 cut(s)	232, 582
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	414, 669
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	7 cut(s)	10, 343, 502, 542, 717, 747, 910
NlaIII	CATG	5 cut(s)	357, 390, 537, 763, 853
NlaIV	GGNNCC	2 cut(s)	409, 610
NmeAIII	GCCGAG	2 cut(s)	242, 459
NspI	RCATGY	1 cut(s)	390
NspV	TTCGAA	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	681
PctI	GAATGC	2 cut(s)	232, 582
PfeI	GAWTC	2 cut(s)	301, 784
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	3 cut(s)	277, 520, 858
PpsI	GAGTC	3 cut(s)	277, 520, 858
Ppu21I	YACGTR	1 cut(s)	676
PshAI	GACNNNNGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	409, 610
PspPI	GGNCC	3 cut(s)	466, 550, 807
PsuI	RGATCY	2 cut(s)	542, 910
RsaI	GTAC	3 cut(s)	48, 651, 701
RsaNI	GTAC	3 cut(s)	47, 650, 700
RseI	CAYNNNNRTG	2 cut(s)	743, 792
SaqAI	TTAA	3 cut(s)	375, 447, 884
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	7 cut(s)	10, 343, 502, 542, 717, 747, 910
Sau96I	GGNCC	3 cut(s)	466, 550, 807
ScaI	AGTACT	1 cut(s)	48
SchI	GAGTC	3 cut(s)	277, 521, 858
ScrFI	CCNGG	2 cut(s)	380, 613
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	754, 855
SfcI	CTRYAG	1 cut(s)	582
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	3 cut(s)	466, 550, 807
SmiMI	CAYNNNNRTG	2 cut(s)	743, 792
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	3 cut(s)	331, 790, 902
SsiI	CCGC	3 cut(s)	134, 553, 636
SspMI	CTAG	2 cut(s)	38, 470
StyD4I	CCNGG	2 cut(s)	378, 611
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	5 cut(s)	74, 99, 242, 372, 772
TaiI	ACGT	3 cut(s)	591, 678, 687
TaqI	TCGA	3 cut(s)	140, 224, 234
TasI	AATT	3 cut(s)	331, 790, 902
TatI	WGTACW	2 cut(s)	46, 699
TfiI	GAWTC	2 cut(s)	301, 784
Tru1I	TTAA	3 cut(s)	375, 447, 884
Tru9I	TTAA	3 cut(s)	375, 447, 884
TscAI	CASTG	5 cut(s)	77, 331, 375, 397, 784
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	902
TspRI	CASTG	5 cut(s)	77, 331, 375, 397, 784
VneI	GTGCAC	1 cut(s)	488
VpaK11BI	GGWCC	3 cut(s)	466, 550, 807
XapI	RAATTY	2 cut(s)	331, 902
XceI	RCATGY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	2 cut(s)	38, 470
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.