Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8279071.1

Orthogroup ID

OG0006414

Physical Location & Seq

Genomic Coordinates Forward (+)

322 .. 845

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8279071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 524 bp

atggagtactgggaatggtactctttgaatgactctcttctgtgttttatcatcttctttacaccacctcttctcttcttgctgatcattcactggagatcaaactccggccgacacggccatcggcttcctcccggccctccaggatggcccattttcggcaacatgttccaagtcggagcaatgcctcacaaaacactcactcatctaagccacaagtacggtccggtaatgtggcttagactctgtgccaaaaacacgatggtaatacagtctaccaaagcggccaccatgtttttcaagcaacacgacctgtcgttcgcggaccgcactgtctatgaagtaagccgtgtgtatggataccacaaggggtcgctggccttatccccttacggatctcactggcgggttatgagacgcctactcacggtggacatgttggtcaaccaccgcatcaacgacacggtgtctattcgtcggaagtgcgcctacgacttgcagtcgtggatcgaagaggaagcgtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

175

Amino Acids

20.51

Weight (kDa)

9.51

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006414)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17550 FvH4_6g17570
malus_domestica	MD12G1098900.v1.1 MD14G1093700.v1.1
prunus_persica	Prupe.7G119800_v2.0.a1 Prupe.7G120000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471801
rosa_laevigata	RLG00000024127 RLG00000024129
rosa_multiflora	Rmu_co8279071.1_g000001 Rmu_sc0002323.1_g000003 Rmu_sc0002323.1_g000014 Rmu_sc0042741.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409520 Rroxscaffold_6G00409540
rosa_rugosa	Rorug03G0120000 Rorug03G0120300 Rorug03G0120500
rosa_samantha	Rh3AG171200 Rh3BG196900 Rh3CG187700 Rh3DG177600 Rh3DG177700 Rh3DG177900
rosa_wichuraiana	Rw3G016880 Rw3G016900 Rw3G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	332, 440
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	1 cut(s)	323
AciI	CCGC	5 cut(s)	284, 323, 328, 406, 451
AclWI	GGATC	2 cut(s)	403, 515
AcoI	YGGCCR	3 cut(s)	109, 118, 285
AcyI	GRCGYC	1 cut(s)	418
AfaI	GTAC	3 cut(s)	8, 20, 221
AfiI	CCNNNNNNNGG	2 cut(s)	158, 427
AflIII	ACRYGT	2 cut(s)	165, 435
AgsI	TTSAA	2 cut(s)	28, 301
AhdI	GACNNNNNGTC	2 cut(s)	466, 499
AjnI	CCWGG	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	403, 515
AoxI	GGCC	6 cut(s)	109, 118, 136, 149, 285, 378
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	4 cut(s)	137, 150, 224, 325
AsuC2I	CCSGG	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	224, 325
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
BccI	CCATC	3 cut(s)	129, 141, 256
BceAI	ACGGC	2 cut(s)	133, 333
BciT130I	CCWGG	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	135, 144
Bme18I	GGWCC	2 cut(s)	224, 325
BmeRI	GACNNNNNGTC	2 cut(s)	466, 499
BmgT120I	GGNCC	4 cut(s)	137, 150, 224, 325
BmrFI	CCNGG	2 cut(s)	135, 144
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	115, 126
BpuMI	CCSGG	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 427
Bse1I	ACTGG	3 cut(s)	14, 98, 407
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	158, 427
BseMI	GCAATG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	14, 98, 407
BseX3I	CGGCCG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	6 cut(s)	111, 120, 138, 151, 287, 380
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	3 cut(s)	108, 135, 227
BslI	CCNNNNNNNGG	2 cut(s)	158, 427
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
BsnI	GGCC	6 cut(s)	111, 120, 138, 151, 287, 380
Bsp143I	GATC	4 cut(s)	84, 98, 395, 507
BspACI	CCGC	5 cut(s)	284, 323, 328, 406, 451
BspANI	GGCC	6 cut(s)	111, 120, 138, 151, 287, 380
BspFNI	CGCG	1 cut(s)	323
BspPI	GGATC	2 cut(s)	403, 515
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	14, 98, 407
BssMI	GATC	4 cut(s)	84, 98, 395, 507
BssNI	GRCGYC	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	5 cut(s)	224, 273, 334, 430, 466
Bst6I	CTCTTC	4 cut(s)	42, 75, 80, 507
BstACI	GRCGYC	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	209, 239
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	4 cut(s)	87, 101, 398, 510
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	4 cut(s)	84, 98, 395, 507
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	2 cut(s)	169, 439
BstSCI	CCNGG	2 cut(s)	133, 142
BstUI	CGCG	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BstZI	CGGCCG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	6 cut(s)	111, 120, 138, 151, 287, 380
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	3 cut(s)	91, 330, 400
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	4 cut(s)	137, 150, 224, 325
CpoI	CGGWCCG	2 cut(s)	224, 325
CseI	GACGC	2 cut(s)	426, 510
Csp6I	GTAC	3 cut(s)	7, 19, 220
CspI	CGGWCCG	2 cut(s)	224, 325
CviAII	CATG	3 cut(s)	166, 292, 436
CviQI	GTAC	3 cut(s)	7, 19, 220
DdeI	CTNAG	2 cut(s)	209, 239
DpnI	GATC	4 cut(s)	86, 100, 397, 509
DpnII	GATC	4 cut(s)	84, 98, 395, 507
DrdI	GACNNNNNNGTC	2 cut(s)	332, 440
DriI	GACNNNNNGTC	2 cut(s)	466, 499
DseDI	GACNNNNNNGTC	2 cut(s)	332, 440
EaeI	YGGCCR	3 cut(s)	109, 118, 285
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	4 cut(s)	42, 75, 80, 507
Eam1105I	GACNNNNNGTC	2 cut(s)	466, 499
EarI	CTCTTC	4 cut(s)	42, 75, 80, 507
EclXI	CGGCCG	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	224, 325
Eco52I	CGGCCG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	3 cut(s)	169, 295, 439
FaiI	YATR	6 cut(s)	167, 293, 339, 357, 413, 437
FatI	CATG	3 cut(s)	165, 291, 435
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	285
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	115, 126
HaeIII	GGCC	6 cut(s)	111, 120, 138, 151, 287, 380
HapII	CCGG	3 cut(s)	108, 135, 227
HgaI	GACGC	2 cut(s)	426, 510
HhaI	GCGC	1 cut(s)	488
Hin1I	GRCGYC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	169, 295, 439
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	2 cut(s)	32, 243
HpaII	CCGG	3 cut(s)	108, 135, 227
Hpy166II	GTNNAC	3 cut(s)	276, 433, 445
Hpy188I	TCNGA	2 cut(s)	179, 480
Hpy8I	GTNNAC	3 cut(s)	276, 433, 445
Hpy99I	CGWCG	1 cut(s)	480
HpyCH4III	ACNGT	5 cut(s)	224, 273, 334, 430, 466
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	2 cut(s)	209, 239
Hsp92I	GRCGYC	1 cut(s)	418
Hsp92II	CATG	3 cut(s)	169, 295, 439
HspAI	GCGC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	84, 98, 395, 507
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	9 cut(s)	79, 121, 129, 148, 156, 240, 326, 362, 388
LweI	GCATC	1 cut(s)	462
MalI	GATC	4 cut(s)	86, 100, 397, 509
MboI	GATC	4 cut(s)	84, 98, 395, 507
MboII	GAAGA	5 cut(s)	29, 46, 62, 67, 524
MflI	RGATCY	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	26, 237
MmeI	TCCRAC	2 cut(s)	157, 458
MnlI	CCTC	5 cut(s)	78, 141, 150, 198, 508
MspI	CCGG	3 cut(s)	108, 135, 227
MspR9I	CCNGG	2 cut(s)	135, 144
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	4 cut(s)	84, 98, 395, 507
NlaIII	CATG	3 cut(s)	169, 295, 439
NspI	RCATGY	2 cut(s)	169, 439
PciI	ACATGT	2 cut(s)	165, 435
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	2 cut(s)	26, 237
PpsI	GAGTC	2 cut(s)	26, 237
PscI	ACATGT	2 cut(s)	165, 435
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspPI	GGNCC	4 cut(s)	137, 150, 224, 325
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	3 cut(s)	8, 20, 221
RsaNI	GTAC	3 cut(s)	7, 19, 220
Rsr2I	CGGWCCG	2 cut(s)	224, 325
RsrII	CGGWCCG	2 cut(s)	224, 325
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	4 cut(s)	84, 98, 395, 507
Sau96I	GGNCC	4 cut(s)	137, 150, 224, 325
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	2 cut(s)	26, 237
ScrFI	CCNGG	2 cut(s)	135, 144
SetI	ASST	2 cut(s)	70, 315
SfaNI	GCATC	1 cut(s)	462
SfiI	GGCCNNNNNGGCC	1 cut(s)	117
SinI	GGWCC	2 cut(s)	224, 325
SsiI	CCGC	5 cut(s)	284, 323, 328, 406, 451
StyD4I	CCNGG	2 cut(s)	133, 142
TaaI	ACNGT	5 cut(s)	224, 273, 334, 430, 466
TaqI	TCGA	1 cut(s)	510
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	287
TscAI	CASTG	3 cut(s)	98, 337, 407
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	3 cut(s)	98, 337, 407
VpaK11BI	GGWCC	2 cut(s)	224, 325
XceI	RCATGY	2 cut(s)	169, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.