Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042741.1

Orthogroup ID

OG0006414

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1866

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 926 bp

atgacgttcaacgttttcgggaacctggtgttgtcgagggacttggtgggacccaaatcggaggaagggatggagtttttccgggcggtgcatggattgatggagtggagtgggcatgcaaacatggctgattactttccgtggctgaagtggcttgacctgcaaggtttgaagaggaagatgaagagggatcttggaaaggctctggagattgtctccaagtttgtaaaggagcgcatgaaggagaggaagatggagggtgcagagcatcagaaaaatggtggaaacttcttggatgttgtgcttgaactaatggaaggaagtgggagtgatgaaccacccgagatttctgatcataatctcaacattttcatactggaaatatttatggcgggttcagaaacaacaagcagcacaatagaatgggcactcaccgaacttttatgcaacccagaggtgctaatgaaggccaaatccgagctcaatcaagtcataggtcgaaacagaaagatcgaagagagtgacattgacaatcttccctacttacaatgcgtaatcaaagaaactctacgattgcatccgccacttccattcctagtaccacgaaaggcaatgcacgacactgtttttagcggatactcgataccgaagaacacacaggtatttgtgaatgtttatgcaataggaagagacccagacgtgtggagtgaccccgtatcgtttaagcctgagaggttcataagatcaaaaattgattacaaggggcaacattatgagttgattccatttggagctgggagacgaatgtgtgcgggtgtgcccttgggtcatagaatgttgcacctaactttggggctgttacttcaccaatttgattgggaatttgatggtagtgttactagagagactatggactggaatgaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

308

Amino Acids

35.4

Weight (kDa)

5.86

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006414)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17550 FvH4_6g17570
malus_domestica	MD12G1098900.v1.1 MD14G1093700.v1.1
prunus_persica	Prupe.7G119800_v2.0.a1 Prupe.7G120000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471801
rosa_laevigata	RLG00000024127 RLG00000024129
rosa_multiflora	Rmu_co8279071.1_g000001 Rmu_sc0002323.1_g000003 Rmu_sc0002323.1_g000014 Rmu_sc0042741.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409520 Rroxscaffold_6G00409540
rosa_rugosa	Rorug03G0120000 Rorug03G0120300 Rorug03G0120500
rosa_samantha	Rh3AG171200 Rh3BG196900 Rh3CG187700 Rh3DG177600 Rh3DG177700 Rh3DG177900
rosa_wichuraiana	Rw3G016880 Rw3G016900 Rw3G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	168
AciI	CCGC	5 cut(s)	86, 392, 581, 633, 812
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	881
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	1 cut(s)	850
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	3 cut(s)	10, 172, 308
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	2 cut(s)	481, 794
AluI	AGCT	2 cut(s)	481, 794
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	4 cut(s)	220, 684, 793, 899
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	411
ApoI	RAATTY	1 cut(s)	881
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	424, 857
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	2 cut(s)	430, 822
BanII	GRGCYC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	4 cut(s)	64, 94, 247, 881
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	629
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	4 cut(s)	220, 684, 793, 899
BfaI	CTAG	2 cut(s)	596, 900
BfuAI	ACCTGC	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	629
BisI	GCNGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	26, 83
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	341
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	3 cut(s)	23, 51, 52
BmrFI	CCNGG	2 cut(s)	26, 83
BmsI	GCATC	2 cut(s)	277, 586
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	140, 822
Bsc4I	CCNNNNNNNGG	1 cut(s)	850
Bse1I	ACTGG	2 cut(s)	381, 920
Bse3DI	GCAATG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	140, 822
BseGI	GGATG	3 cut(s)	75, 301, 577
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	850
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	2 cut(s)	381, 920
BseSI	GKGCMC	2 cut(s)	430, 822
BseXI	GCAGC	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	794
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	53, 63
BslI	CCNNNNNNNGG	1 cut(s)	850
BsmAI	GTCTC	4 cut(s)	220, 684, 793, 899
BsmBI	CGTCTC	1 cut(s)	793
BsmFI	GGGAC	2 cut(s)	53, 63
BsnI	GGCC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	3 cut(s)	430, 483, 822
Bsp143I	GATC	4 cut(s)	190, 352, 510, 743
BspACI	CCGC	5 cut(s)	86, 392, 581, 633, 812
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	721
BspLI	GGNNCC	3 cut(s)	23, 51, 52
BspMI	ACCTGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	684
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	381, 920
BssECI	CCNNGG	2 cut(s)	140, 822
BssMI	GATC	4 cut(s)	190, 352, 510, 743
BssT1I	CCWWGG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	4 cut(s)	167, 179, 510, 682
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	729
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	75, 301, 577
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	193, 355, 513, 746
BstMAI	GTCTC	4 cut(s)	220, 684, 793, 899
BstMBI	GATC	4 cut(s)	190, 352, 510, 743
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 151, 160
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	24, 81
BstSLI	GKGCMC	2 cut(s)	430, 822
BstV1I	GCAGC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	3 cut(s)	75, 301, 577
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	599
CviAII	CATG	4 cut(s)	92, 116, 124, 238
CviJI	RGCY	9 cut(s)	128, 145, 154, 203, 470, 481, 727, 794, 856
CviKI_1	RGCY	9 cut(s)	128, 145, 154, 203, 470, 481, 727, 794, 856
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	4 cut(s)	192, 354, 512, 745
DpnII	GATC	4 cut(s)	190, 352, 510, 743
Eam1104I	CTCTTC	4 cut(s)	167, 179, 510, 682
EarI	CTCTTC	4 cut(s)	167, 179, 510, 682
EciI	GGCGGA	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	822
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	793
FaeI	CATG	4 cut(s)	95, 119, 127, 241
FaqI	GGGAC	2 cut(s)	53, 63
FatI	CATG	4 cut(s)	91, 115, 123, 237
FauI	CCCGC	2 cut(s)	385, 805
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	412
FokI	GGATG	3 cut(s)	82, 308, 564
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	1 cut(s)	412
FspBI	CTAG	2 cut(s)	596, 900
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	412
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	95, 119, 127, 241
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	781
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	424, 857
Hpy188I	TCNGA	5 cut(s)	61, 273, 352, 400, 478
Hpy188III	TCNNGA	2 cut(s)	19, 206
HpyAV	CCTTC	4 cut(s)	59, 235, 311, 460
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	3 cut(s)	5, 12, 699
HpyCH4V	TGCA	9 cut(s)	91, 119, 163, 263, 447, 577, 616, 680, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 151, 160
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	3 cut(s)	5, 12, 699
Hsp92II	CATG	4 cut(s)	95, 119, 127, 241
HspAI	GCGC	1 cut(s)	235
KflI	GGGWCCC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	190, 352, 510, 743
LmnI	GCTCC	2 cut(s)	232, 791
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	2 cut(s)	277, 586
MabI	ACCWGGT	1 cut(s)	24
MaeI	CTAG	2 cut(s)	596, 900
MaeII	ACGT	3 cut(s)	5, 12, 699
MaeIII	GTNAC	4 cut(s)	521, 707, 858, 895
MalI	GATC	4 cut(s)	192, 354, 512, 745
MboI	GATC	4 cut(s)	190, 352, 510, 743
MboII	GAAGA	8 cut(s)	184, 190, 196, 262, 527, 527, 661, 699
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	3 cut(s)	430, 483, 822
MluCI	AATT	3 cut(s)	750, 869, 881
MnlI	CCTC	8 cut(s)	30, 55, 168, 180, 240, 250, 448, 726
MseI	TTAA	1 cut(s)	723
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	26, 83
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	125, 151, 160
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	4 cut(s)	190, 352, 510, 743
NlaIII	CATG	4 cut(s)	95, 119, 127, 241
NlaIV	GGNNCC	3 cut(s)	23, 51, 52
NmuCI	GTSAC	2 cut(s)	521, 707
NspI	RCATGY	1 cut(s)	119
PaeI	GCATGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	781
PkrI	GCNGC	1 cut(s)	413
PpuMI	RGGWCCY	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	23, 51, 52
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	1 cut(s)	412
Sau3AI	GATC	4 cut(s)	190, 352, 510, 743
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	26, 83
SduI	GDGCHC	3 cut(s)	430, 483, 822
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	277, 586
SinI	GGWCC	1 cut(s)	50
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	3 cut(s)	750, 869, 881
SsiI	CCGC	5 cut(s)	86, 392, 581, 633, 812
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	596, 900
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	24, 81
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	3 cut(s)	8, 15, 702
TaqI	TCGA	4 cut(s)	35, 499, 513, 641
TasI	AATT	3 cut(s)	750, 869, 881
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	2 cut(s)	521, 707
TseI	GCWGC	1 cut(s)	411
Tsp45I	GTSAC	2 cut(s)	521, 707
TspDTI	ATGAA	6 cut(s)	197, 254, 348, 361, 479, 727
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	881
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	2 cut(s)	596, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.