Rroxscaffold_6G00409540

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
32040208 .. 32041926
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409540.1

Sequence Viewer

Length: 1461 bp
ATGGAGCACTTGCCCTGGAATTTTCTTGTTTATTTTATCATACCAGCTCTGCTCTTCTTGTTCATCCGCCGGAGATCAAACTCCAGTAAAGATCATGAGCTTCCACCCGGCCCACCGGGATGGCCAATAATCGGCAACATGCTTGACCTTGGAGAGATGCCACACAAAACCCTCACCAAGCTGCGTCACACTTTTGGTCCAGTGATATGGCTAAGAATTGGTGCCCGAAACACCATGGCAATCCTCTCCGCCAAAGCAGCCACCGAGTTTTTCAAGAAACACGACCTCTCGTTCGCTGAACGCTCCATCACCGAAGGTAGTCGAGTGCTCGACTACCATAAGGGGTCACTAGCTCTGGCCCCTTATGGGTCACACTGGCGCGTGTTAAAGCGCCTGTTGACGGTAGACATGTTGACCAACAAGCGTATCAATGACACTGCACCGATTCGGAGAAAGTGCGTTGACAACATGCAGAAGTGGATAGAAGAGGAAGCCTCTAAACTCCCAGCGAATGGAACATCATCGCGTGGGGTGCACCTGGCTCGTTTCGTGTTCCTCATGGCGTTTAATCTTCTTGGGAATCTCATGTTGTCTAGAGACTTGGTGGATCCGAATTCGAAAGAAGGGCTGGAGTTTTTCAAGGTGATGAAGGGACTCATGGAGACGAATGGGCATGCCAACATGGCAGACTACTTTCCATGGCTGAGGTGGCTTGATCCACAAGGTGTGAGGAAGAGGATGAAGAAGGATATGGCAAAGGCTCTGAAACTAGCCTCTGGCAATGGAAATGATGAACCAGCAAAGATTTCTGACCATGATATCAATATTTTCATACTGGAAATTTTTTTGGCAGGTGCAGAAACAACAAGCAGCACAATTGAATGGGCAATGACCGAGCTACTATGCAACCCGGAGACGCTAATCAAGGCCAAAACAGAACTCAATCATGTGATCGGTCTAAACAGAAAGATCGACGAGTCTGACATTGACAATCTTCCATACTTGCAAGGCATAGTTAAAGAAACACTAAGATTACATCCACCCGTCCCATTCCTCATACCAAGGAAAGCTATGCAAGACACCAAATTCATGGGTTACTTCATATCCAAAAATACACAGGTATTTGTTAATGCTTATGCAATTGGAAGAGACCCAGATGTTTGGATTGATGAGCCTAATTCGTTTAAGCCCGAGAGATTCATAGGGGCAAAAGTGGATTATAAGGGTCAGCATTATGAGTTGATTCCATTTGGAGCCGGGAGAAGAATGTGTGCTGGTGTGCCGTTGGGTGATAGGATGCTGCACCTTACTTTGGGGTCATTGCTTCACCAATTTGATTGGGCACTTGATGGAAATGTTACTAAGGAAACTATGGATTGGAATGATAGGTTAGGCATAACAATGAGAAAGTATCAGCCATTAGTAGCTGTGCCTACAAAGTGCTTGGCTAGTTCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

55.28

Weight (kDa)

9.23

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 253 1.3e-25 Cytochrome P450
p450 PF00067 245 - 470 5.5e-69 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1221
AarI CACCTGC 1 cut(s) 842
Acc36I ACCTGC 1 cut(s) 842
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 512
AccI GTMKAC 1 cut(s) 405
AccII CGCG 2 cut(s) 381, 526
AciI CCGC 2 cut(s) 67, 249
AclWI GGATC 3 cut(s) 602, 615, 710
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 4 cut(s) 19, 613, 840, 1085
AdeI CACNNNGTG 1 cut(s) 725
AfiI CCNNNNNNNGG 5 cut(s) 131, 366, 400, 512, 1312
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 3 cut(s) 274, 640, 881
AjnI CCWGG 2 cut(s) 14, 537
AluBI AGCT 7 cut(s) 47, 100, 181, 353, 898, 1070, 1427
AluI AGCT 7 cut(s) 47, 100, 181, 353, 898, 1070, 1427
Alw21I GWGCWC 3 cut(s) 9, 330, 537
Alw26I GTCTC 4 cut(s) 591, 656, 908, 1143
Alw44I GTGCAC 1 cut(s) 533
AlwI GGATC 3 cut(s) 602, 615, 710
Ama87I CYCGRG 1 cut(s) 1190
AoxI GGCC 4 cut(s) 109, 122, 357, 927
ApaLI GTGCAC 1 cut(s) 533
ApeKI GCWGC 4 cut(s) 181, 257, 870, 1300
ApoI RAATTY 4 cut(s) 19, 613, 840, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspLEI GCGC 2 cut(s) 381, 393
AspS9I GGNCC 3 cut(s) 110, 197, 358
AsuC2I CCSGG 4 cut(s) 108, 117, 911, 1258
AsuHPI GGTGA 5 cut(s) 166, 301, 655, 1301, 1319
AsuII TTCGAA 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 1190
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 3 cut(s) 226, 537, 1345
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BalI TGGCCA 1 cut(s) 124
BamHI GGATCC 1 cut(s) 607
BanI GGYRCC 1 cut(s) 221
Bbv12I GWGCWC 3 cut(s) 9, 330, 537
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 4 cut(s) 168, 269, 882, 1287
BccI CCATC 3 cut(s) 114, 314, 1343
BceAI ACGGC 1 cut(s) 1267
BcgI CGANNNNNNTGC 2 cut(s) 524, 558
BciT130I CCWGG 2 cut(s) 16, 539
BcnI CCSGG 4 cut(s) 108, 117, 911, 1258
BcoDI GTCTC 4 cut(s) 591, 656, 908, 1143
BfaI CTAG 4 cut(s) 350, 594, 770, 1449
BfoI RGCGCY 1 cut(s) 394
BfuAI ACCTGC 1 cut(s) 842
BglI GCCNNNNNGGC 1 cut(s) 683
BisI GCNGC 4 cut(s) 182, 258, 871, 1301
BlsI GCNGC 4 cut(s) 183, 259, 872, 1302
Bme1390I CCNGG 6 cut(s) 16, 108, 117, 539, 911, 1258
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 1190
BmgT120I GGNCC 3 cut(s) 110, 197, 358
BmiI GGNNCC 4 cut(s) 223, 360, 609, 1255
BmrFI CCNGG 6 cut(s) 16, 108, 117, 539, 911, 1258
BmsI GCATC 2 cut(s) 147, 1287
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpmI CTGGAG 2 cut(s) 67, 650
Bpu10I CCTNAGC 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 617
BpuMI CCSGG 4 cut(s) 108, 117, 911, 1258
BsaI GGTCTC 1 cut(s) 1143
BsaJI CCNNGG 5 cut(s) 14, 148, 234, 698, 1061
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 366, 400, 512, 1312
Bse1I ACTGG 4 cut(s) 84, 200, 380, 840
Bse3DI GCAATG 3 cut(s) 787, 894, 1319
BseBI CCWGG 2 cut(s) 16, 539
BseDI CCNNGG 5 cut(s) 14, 148, 234, 698, 1061
BseGI GGATG 5 cut(s) 63, 125, 744, 1036, 1302
BseLI CCNNNNNNNGG 5 cut(s) 131, 366, 400, 512, 1312
BseMI GCAATG 3 cut(s) 787, 894, 1319
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 4 cut(s) 84, 200, 380, 840
BseSI GKGCMC 3 cut(s) 226, 537, 1345
BseXI GCAGC 4 cut(s) 168, 269, 882, 1287
BseYI CCCAGC 1 cut(s) 505
BsgI GTGCAG 3 cut(s) 423, 876, 1286
Bsh1236I CGCG 2 cut(s) 381, 526
BshFI GGCC 4 cut(s) 111, 124, 359, 929
BshNI GGYRCC 1 cut(s) 221
BsiHKAI GWGCWC 3 cut(s) 9, 330, 537
BsiHKCI CYCGRG 1 cut(s) 1190
BsiSI CCGG 5 cut(s) 70, 108, 116, 911, 1257
BslFI GGGAC 2 cut(s) 666, 1031
BslI CCNNNNNNNGG 5 cut(s) 131, 366, 400, 512, 1312
BsmAI GTCTC 4 cut(s) 591, 656, 908, 1143
BsmBI CGTCTC 2 cut(s) 656, 908
BsmFI GGGAC 2 cut(s) 666, 1031
BsnI GGCC 4 cut(s) 111, 124, 359, 929
Bso31I GGTCTC 1 cut(s) 1143
BsoBI CYCGRG 1 cut(s) 1190
Bsp119I TTCGAA 1 cut(s) 617
Bsp1286I GDGCHC 5 cut(s) 9, 226, 330, 537, 1345
Bsp143I GATC 6 cut(s) 74, 91, 607, 715, 951, 969
Bsp19I CCATGG 2 cut(s) 234, 698
BspACI CCGC 2 cut(s) 67, 249
BspANI GGCC 4 cut(s) 111, 124, 359, 929
BspCNI CTCAG 1 cut(s) 696
BspFNI CGCG 2 cut(s) 381, 526
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 4 cut(s) 223, 360, 609, 1255
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 3 cut(s) 602, 615, 710
BspQI GCTCTTC 1 cut(s) 59
BspT104I TTCGAA 1 cut(s) 617
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 1143
BsrDI GCAATG 3 cut(s) 787, 894, 1319
BsrI ACTGG 4 cut(s) 84, 200, 380, 840
BssECI CCNNGG 5 cut(s) 14, 148, 234, 698, 1061
BssMI GATC 6 cut(s) 74, 91, 607, 715, 951, 969
BssT1I CCWWGG 4 cut(s) 148, 234, 698, 1061
Bst2UI CCWGG 2 cut(s) 16, 539
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 4 cut(s) 59, 480, 728, 1141
BstBI TTCGAA 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 4 cut(s) 212, 704, 1028, 1362
BstDSI CCRYGG 2 cut(s) 234, 698
BstF5I GGATG 5 cut(s) 63, 125, 744, 1036, 1302
BstFNI CGCG 2 cut(s) 381, 526
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 2 cut(s) 381, 393
BstKTI GATC 6 cut(s) 77, 94, 610, 718, 954, 972
BstMAI GTCTC 4 cut(s) 591, 656, 908, 1143
BstMBI GATC 6 cut(s) 74, 91, 607, 715, 951, 969
BstMWI GCNNNNNNNGC 4 cut(s) 257, 532, 683, 709
BstNI CCWGG 2 cut(s) 16, 539
BstNSI RCATGY 4 cut(s) 142, 412, 472, 677
BstSCI CCNGG 6 cut(s) 14, 106, 115, 537, 909, 1256
BstSLI GKGCMC 3 cut(s) 226, 537, 1345
BstUI CGCG 2 cut(s) 381, 526
BstV1I GCAGC 4 cut(s) 168, 269, 882, 1287
BstX2I RGATCY 1 cut(s) 607
BstXI CCANNNNNNTGG 4 cut(s) 120, 207, 1090, 1161
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 4 cut(s) 111, 124, 359, 929
BtgI CCRYGG 2 cut(s) 234, 698
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 5 cut(s) 63, 125, 744, 1036, 1302
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 3 cut(s) 207, 373, 435
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 1 cut(s) 675
CciI TCATGA 1 cut(s) 94
CfoI GCGC 2 cut(s) 381, 393
Cfr13I GGNCC 3 cut(s) 110, 197, 358
CseI GACGC 2 cut(s) 173, 925
DdeI CTNAG 4 cut(s) 212, 704, 1028, 1362
DpnI GATC 6 cut(s) 76, 93, 609, 717, 953, 971
DpnII GATC 6 cut(s) 74, 91, 607, 715, 951, 969
DraIII CACNNNGTG 1 cut(s) 725
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 4 cut(s) 59, 480, 728, 1141
EarI CTCTTC 4 cut(s) 59, 480, 728, 1141
EciI GGCGGA 2 cut(s) 56, 238
Eco130I CCWWGG 4 cut(s) 148, 234, 698, 1061
Eco31I GGTCTC 1 cut(s) 1143
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 1190
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 2 cut(s) 14, 537
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 4 cut(s) 148, 234, 698, 1061
ErhI CCWWGG 4 cut(s) 148, 234, 698, 1061
Esp3I CGTCTC 2 cut(s) 656, 908
FaqI GGGAC 2 cut(s) 666, 1031
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 182, 258, 871, 1301
FokI GGATG 5 cut(s) 50, 132, 751, 1023, 1309
Fsp4HI GCNGC 4 cut(s) 182, 258, 871, 1301
FspBI CTAG 4 cut(s) 350, 594, 770, 1449
GlaI GCGC 2 cut(s) 380, 392
GluI GCNGC 4 cut(s) 182, 258, 871, 1301
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 2 cut(s) 67, 650
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 4 cut(s) 111, 124, 359, 929
HapII CCGG 5 cut(s) 70, 108, 116, 911, 1257
HgaI GACGC 2 cut(s) 173, 925
HhaI GCGC 2 cut(s) 381, 393
Hin6I GCGC 2 cut(s) 379, 391
HinP1I GCGC 2 cut(s) 379, 391
HincII GTYRAC 3 cut(s) 399, 414, 463
HindII GTYRAC 3 cut(s) 399, 414, 463
HinfI GANTC 6 cut(s) 445, 580, 654, 977, 1197, 1243
HpaII CCGG 5 cut(s) 70, 108, 116, 911, 1257
HphI GGTGA 5 cut(s) 166, 301, 655, 1301, 1319
Hpy166II GTNNAC 5 cut(s) 399, 406, 414, 463, 535
Hpy188I TCNGA 5 cut(s) 450, 612, 765, 811, 982
Hpy188III TCNNGA 3 cut(s) 95, 274, 594
Hpy8I GTNNAC 5 cut(s) 399, 406, 414, 463, 535
Hpy99I CGWCG 1 cut(s) 977
HpyAV CCTTC 4 cut(s) 308, 617, 643, 739
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 9 cut(s) 440, 472, 535, 857, 906, 1006, 1075, 1139, 1303
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 532, 683, 709
HpyF3I CTNAG 4 cut(s) 212, 704, 1028, 1362
HspAI GCGC 2 cut(s) 379, 391
Kzo9I GATC 6 cut(s) 74, 91, 607, 715, 951, 969
LguI GCTCTTC 1 cut(s) 59
LmnI GCTCC 3 cut(s) 4, 308, 1253
Lsp1109I GCAGC 4 cut(s) 168, 269, 882, 1287
LweI GCATC 2 cut(s) 147, 1287
MaeI CTAG 4 cut(s) 350, 594, 770, 1449
MaeIII GTNAC 5 cut(s) 185, 345, 369, 1094, 1357
MalI GATC 6 cut(s) 76, 93, 609, 717, 953, 971
MboI GATC 6 cut(s) 74, 91, 607, 715, 951, 969
MboII GAAGA 8 cut(s) 46, 497, 563, 745, 754, 986, 1158, 1275
MfeI CAATTG 2 cut(s) 876, 1140
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 5 cut(s) 9, 226, 330, 537, 1345
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 9 cut(s) 19, 216, 613, 840, 876, 1085, 1140, 1177, 1331
MluNI TGGCCA 1 cut(s) 124
MlyI GAGTC 2 cut(s) 648, 986
Mox20I TGGCCA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 124
MseI TTAA 5 cut(s) 386, 567, 1017, 1128, 1185
MslI CAYNNNNRTG 2 cut(s) 118, 1400
Msp20I TGGCCA 1 cut(s) 124
MspI CCGG 5 cut(s) 70, 108, 116, 911, 1257
MspR9I CCNGG 6 cut(s) 16, 108, 117, 539, 911, 1258
MunI CAATTG 2 cut(s) 876, 1140
MvaI CCWGG 2 cut(s) 16, 539
MvnI CGCG 2 cut(s) 381, 526
MwoI GCNNNNNNNGC 4 cut(s) 257, 532, 683, 709
NciI CCSGG 4 cut(s) 108, 117, 911, 1258
NcoI CCATGG 2 cut(s) 234, 698
NdeII GATC 6 cut(s) 74, 91, 607, 715, 951, 969
NlaIV GGNNCC 4 cut(s) 223, 360, 609, 1255
NmuCI GTSAC 3 cut(s) 185, 345, 369
NspI RCATGY 4 cut(s) 142, 412, 472, 677
NspV TTCGAA 1 cut(s) 617
PaeI GCATGC 1 cut(s) 677
PagI TCATGA 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 842
PciI ACATGT 1 cut(s) 408
PciSI GCTCTTC 1 cut(s) 59
PfeI GAWTC 4 cut(s) 445, 580, 1197, 1243
PflMI CCANNNNNTGG 1 cut(s) 512
PkrI GCNGC 4 cut(s) 183, 259, 872, 1302
PleI GAGTC 2 cut(s) 648, 985
PpsI GAGTC 2 cut(s) 648, 985
PscI ACATGT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 1221
Psp6I CCWGG 2 cut(s) 14, 537
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 2 cut(s) 14, 537
PspN4I GGNNCC 4 cut(s) 223, 360, 609, 1255
PspPI GGNCC 3 cut(s) 110, 197, 358
PsuI RGATCY 1 cut(s) 607
RseI CAYNNNNRTG 2 cut(s) 118, 1400
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 5 cut(s) 386, 567, 1017, 1128, 1185
SatI GCNGC 4 cut(s) 182, 258, 871, 1301
Sau3AI GATC 6 cut(s) 74, 91, 607, 715, 951, 969
Sau96I GGNCC 3 cut(s) 110, 197, 358
SchI GAGTC 2 cut(s) 648, 986
ScrFI CCNGG 6 cut(s) 16, 108, 117, 539, 911, 1258
SduI GDGCHC 5 cut(s) 9, 226, 330, 537, 1345
SfaNI GCATC 2 cut(s) 147, 1287
SfuI TTCGAA 1 cut(s) 617
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 118, 1400
SphI GCATGC 1 cut(s) 677
Sse9I AATT 9 cut(s) 19, 216, 613, 840, 876, 1085, 1140, 1177, 1331
SsiI CCGC 2 cut(s) 67, 249
SspI AATATT 1 cut(s) 826
SspMI CTAG 4 cut(s) 350, 594, 770, 1449
StyD4I CCNGG 6 cut(s) 14, 106, 115, 537, 909, 1256
StyI CCWWGG 4 cut(s) 148, 234, 698, 1061
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 4 cut(s) 322, 330, 617, 972
TaqII GACCGA 2 cut(s) 908, 944
TasI AATT 9 cut(s) 19, 216, 613, 840, 876, 1085, 1140, 1177, 1331
TfiI GAWTC 4 cut(s) 445, 580, 1197, 1243
Tru1I TTAA 5 cut(s) 386, 567, 1017, 1128, 1185
Tru9I TTAA 5 cut(s) 386, 567, 1017, 1128, 1185
TscAI CASTG 3 cut(s) 207, 380, 442
TseFI GTSAC 3 cut(s) 185, 345, 369
TseI GCWGC 4 cut(s) 181, 257, 870, 1300
Tsp45I GTSAC 3 cut(s) 185, 345, 369
TspDTI ATGAA 9 cut(s) 52, 662, 755, 807, 820, 1078, 1090, 1189, 1443
TspRI CASTG 3 cut(s) 207, 380, 442
Van91I CCANNNNNTGG 1 cut(s) 512
VneI GTGCAC 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 4 cut(s) 19, 613, 840, 1085
XbaI TCTAGA 1 cut(s) 593
XceI RCATGY 4 cut(s) 142, 412, 472, 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 4 cut(s) 350, 594, 770, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.