Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006414

Physical Location & Seq

Genomic Coordinates Forward (+)

9699196 .. 9700473

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0120300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGATGAGTAGCCGAATCGACAGCCGCCTACTTAGCCTGGCGAAGTTCCACATCTTCTGCACTGTATCACTTGTTGCAATCATCTTCATCATCTATGCAGATGGTATCATATATACTGATTCCCAAAACTCGGTTGAGTTGAAAGATAAAGCTGTTTCTCAGGTGCTGCAGACTCATAGTATCGAACGCCAGTTCATCAAGTCTGATATAACTCGTAAAGCGCTGCGTTCTATGCAAGAAAATGTCCTTGATGTCGTTGAAGTTGATACAGAAGATACAAGTCCTGTTGTTGCTCCTTTCAATGTCACTGAAGAAGAAAGAATCAGCTGGTTTCGGGGAAAGCTGCCCGAATTTGTGATTTTTGATTCGGACGAGAAGGCGCTGCAGTTTCATGGTAGAGTTCTTGAATTCTTTGACCATAAGTGTGAGACTCAGTTCTTCATGACATGGATATCGCCTGCGAGGTCTTTTGGAAGCAGAGAATTCCTGTCGATGGAGAGTGTATTCAGAGCTCACCCTCGTGGTTGCTTGATGATTCTTTCGAGAACCATGGACTCCAGGCGAGGTTACAGGCTTCTGAAACCGCTGCAGGATCGCGGGTTCAAAGTTCATGCTGTGACGCCAGACTTGTCATTTCTGTTCAAGAACACCCCAGCTGAGGCCTGGTTTGCTGAGATGAAGACAGGCAACAGAGACCCTGGTGAGATTCCATTAGCTCAGAACCTGTCTAATTTATTGAGACTAGCAGTTTTATACAAGTATGGAGGTGTGTACCTGGACACGGATTTCATTGTCATGAAATCATTTTCGGGGTTGAGGAACTCAATCGGTGCACAAAGTATGGATGCGGTGTCGAAAAACTGGACCAGACTGAACAATGCAGTGCTGGTGTTTGATATGAATCATCCTCTTCTGCGCAAATTCATCAAGGAGTTTGCCTTGACTTTTGATGGGAATAAATGGGGTCACAATGGACCCTATCTTGTTTCCAGAGTGGTCCAAAGAGTGCAAAACAGACCTGGATATAACTTTACAGTCCTGCCTCCTATGGCTTTCTATCCAGTGGATTGGACTAGAATTGGGGGCTTGTTTAAGAAGCCGAAAAACCATGCTGACACTAAATGGATAAACGCGAAGCTGCTTCAGCTTAGTGAGGAGACTTTTGGAGTACACCTATGGAACAAGCAAAGTAGCAGAGTACTAATCGAAGAAGGAAGCATTATGCAGAGATTAATCTCCTATCACTGCGTCATCTGTAAAGACATATATAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

425

Amino Acids

48.93

Weight (kDa)

9.12

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gly_transf_sug	PF04488	160 - 280	3.6e-22	Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth	PF04572	298 - 420	7.6e-29	Alpha 1,4-glycosyltransferase conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006414)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17550 FvH4_6g17570
malus_domestica	MD12G1098900.v1.1 MD14G1093700.v1.1
prunus_persica	Prupe.7G119800_v2.0.a1 Prupe.7G120000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0471801
rosa_laevigata	RLG00000024127 RLG00000024129
rosa_multiflora	Rmu_co8279071.1_g000001 Rmu_sc0002323.1_g000003 Rmu_sc0002323.1_g000014 Rmu_sc0042741.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409520 Rroxscaffold_6G00409540
rosa_rugosa	Rorug03G0120000 Rorug03G0120300 Rorug03G0120500
rosa_samantha	Rh3AG171200 Rh3BG196900 Rh3CG187700 Rh3DG177600 Rh3DG177700 Rh3DG177900
rosa_wichuraiana	Rw3G016880 Rw3G016900 Rw3G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	917
AccII	CGCG	2 cut(s)	597, 1133
AciI	CCGC	4 cut(s)	25, 584, 597, 848
AclWI	GGATC	1 cut(s)	600
AcsI	RAATTY	4 cut(s)	350, 407, 482, 920
AcuI	CTGAAG	2 cut(s)	330, 1127
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	3 cut(s)	773, 1170, 1200
AfeI	AGCGCT	1 cut(s)	222
AfiI	CCNNNNNNNGG	4 cut(s)	130, 493, 658, 781
AgsI	TTSAA	6 cut(s)	142, 260, 301, 407, 604, 643
AjnI	CCWGG	6 cut(s)	36, 557, 662, 697, 774, 1018
AleI	CACNNNNGTG	1 cut(s)	519
AloI	GAACNNNNNNTCC	2 cut(s)	584, 616
AluBI	AGCT	8 cut(s)	152, 327, 343, 512, 656, 716, 1138, 1147
AluI	AGCT	8 cut(s)	152, 327, 343, 512, 656, 716, 1138, 1147
Alw21I	GWGCWC	2 cut(s)	514, 835
Alw26I	GTCTC	4 cut(s)	422, 687, 733, 1151
Alw44I	GTGCAC	1 cut(s)	831
AlwI	GGATC	1 cut(s)	600
AlwNI	CAGNNNCTG	2 cut(s)	166, 724
Aor51HI	AGCGCT	1 cut(s)	222
AoxI	GGCC	1 cut(s)	660
ApaLI	GTGCAC	1 cut(s)	831
ApeKI	GCWGC	6 cut(s)	166, 223, 343, 382, 586, 1138
ApoI	RAATTY	4 cut(s)	350, 407, 482, 920
AseI	ATTAAT	1 cut(s)	1232
AspLEI	GCGC	3 cut(s)	223, 382, 918
AspS9I	GGNCC	3 cut(s)	864, 974, 997
AsuHPI	GGTGA	2 cut(s)	506, 713
AvaII	GGWCC	3 cut(s)	864, 974, 997
BaeGI	GKGCMC	1 cut(s)	835
BanII	GRGCYC	1 cut(s)	514
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	686
Bbv12I	GWGCWC	2 cut(s)	514, 835
BbvCI	CCTCAGC	1 cut(s)	657
BbvI	GCAGC	6 cut(s)	153, 210, 330, 369, 573, 1125
BccI	CCATC	3 cut(s)	95, 487, 944
BciT130I	CCWGG	6 cut(s)	38, 559, 664, 699, 776, 1020
BcoDI	GTCTC	4 cut(s)	422, 687, 733, 1151
BfaI	CTAG	2 cut(s)	743, 1074
BfmI	CTRYAG	3 cut(s)	167, 383, 587
BfoI	RGCGCY	2 cut(s)	224, 383
BisI	GCNGC	7 cut(s)	25, 167, 224, 344, 383, 587, 1139
BlsI	GCNGC	7 cut(s)	26, 168, 225, 345, 384, 588, 1140
BmcAI	AGTACT	1 cut(s)	1200
Bme1390I	CCNGG	6 cut(s)	38, 559, 664, 699, 776, 1020
Bme18I	GGWCC	3 cut(s)	864, 974, 997
BmgT120I	GGNCC	3 cut(s)	864, 974, 997
BmiI	GGNNCC	1 cut(s)	976
BmrFI	CCNGG	6 cut(s)	38, 559, 664, 699, 776, 1020
BmsI	GCATC	1 cut(s)	835
BpiI	GAAGAC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	541
Bpu10I	CCTNAGC	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	549, 697
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 493, 658, 781
Bse1I	ACTGG	3 cut(s)	190, 866, 1061
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	6 cut(s)	38, 559, 664, 699, 776, 1020
BseDI	CCNNGG	2 cut(s)	549, 697
BseGI	GGATG	2 cut(s)	850, 904
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	4 cut(s)	130, 493, 658, 781
BseMII	CTCAG	5 cut(s)	173, 446, 648, 663, 731
BseNI	ACTGG	3 cut(s)	190, 866, 1061
BseRI	GAGGAG	1 cut(s)	1169
BseSI	GKGCMC	1 cut(s)	835
BseXI	GCAGC	6 cut(s)	153, 210, 330, 369, 573, 1125
BseYI	CCCAGC	1 cut(s)	652
BsgI	GTGCAG	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	597, 1133
BshFI	GGCC	1 cut(s)	662
BsiHKAI	GWGCWC	2 cut(s)	514, 835
BslI	CCNNNNNNNGG	4 cut(s)	130, 493, 658, 781
BsmAI	GTCTC	4 cut(s)	422, 687, 733, 1151
BsnI	GGCC	1 cut(s)	662
Bso31I	GGTCTC	1 cut(s)	687
Bsp1286I	GDGCHC	2 cut(s)	514, 835
Bsp143I	GATC	1 cut(s)	592
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	4 cut(s)	25, 584, 597, 848
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	5 cut(s)	172, 445, 649, 664, 730
BspFNI	CGCG	2 cut(s)	597, 1133
BspHI	TCATGA	2 cut(s)	441, 795
BspLI	GGNNCC	1 cut(s)	976
BspMAI	CTGCAG	3 cut(s)	171, 387, 591
BspPI	GGATC	1 cut(s)	600
BspTNI	GGTCTC	1 cut(s)	687
BsrI	ACTGG	3 cut(s)	190, 866, 1061
BssECI	CCNNGG	2 cut(s)	549, 697
BssMI	GATC	1 cut(s)	592
BssNI	GRCGYC	1 cut(s)	620
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	6 cut(s)	38, 559, 664, 699, 776, 1020
Bst4CI	ACNGT	2 cut(s)	64, 1036
Bst6I	CTCTTC	1 cut(s)	915
BstACI	GRCGYC	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	7 cut(s)	32, 159, 432, 657, 672, 717, 1148
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	850, 904
BstFNI	CGCG	2 cut(s)	597, 1133
BstH2I	RGCGCY	2 cut(s)	224, 383
BstHHI	GCGC	3 cut(s)	223, 382, 918
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	4 cut(s)	422, 687, 733, 1151
BstMBI	GATC	1 cut(s)	592
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 232, 668, 1144
BstNI	CCWGG	6 cut(s)	38, 559, 664, 699, 776, 1020
BstSCI	CCNGG	6 cut(s)	36, 557, 662, 697, 774, 1018
BstSFI	CTRYAG	3 cut(s)	167, 383, 587
BstSLI	GKGCMC	1 cut(s)	835
BstUI	CGCG	2 cut(s)	597, 1133
BstV1I	GCAGC	6 cut(s)	153, 210, 330, 369, 573, 1125
BstV2I	GAAGAC	1 cut(s)	686
BstXI	CCANNNNNNTGG	1 cut(s)	1068
BsuRI	GGCC	1 cut(s)	662
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	850, 904
BtsI	GCAGTG	2 cut(s)	888, 1243
BtsIMutI	CAGTG	5 cut(s)	60, 306, 888, 1068, 1243
Cac8I	GCNNGC	1 cut(s)	459
CaiI	CAGNNNCTG	2 cut(s)	166, 724
CciI	TCATGA	2 cut(s)	441, 795
CfoI	GCGC	3 cut(s)	223, 382, 918
Cfr13I	GGNCC	3 cut(s)	864, 974, 997
CseI	GACGC	2 cut(s)	628, 1237
Csp6I	GTAC	3 cut(s)	772, 1169, 1199
CviAII	CATG	7 cut(s)	392, 442, 447, 550, 611, 796, 1109
CviQI	GTAC	3 cut(s)	772, 1169, 1199
DdeI	CTNAG	7 cut(s)	32, 159, 432, 657, 672, 717, 1148
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	662
Eco24I	GRGCYC	1 cut(s)	514
Eco31I	GGTCTC	1 cut(s)	687
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	3 cut(s)	864, 974, 997
Eco47III	AGCGCT	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	330, 1127
EcoICRI	GAGCTC	1 cut(s)	512
EcoRI	GAATTC	2 cut(s)	407, 482
EcoRII	CCWGG	6 cut(s)	36, 557, 662, 697, 774, 1018
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	7 cut(s)	395, 445, 450, 553, 614, 799, 1112
FatI	CATG	7 cut(s)	391, 441, 446, 549, 610, 795, 1108
FauI	CCCGC	1 cut(s)	590
Fnu4HI	GCNGC	7 cut(s)	25, 167, 224, 344, 383, 587, 1139
FokI	GGATG	2 cut(s)	857, 891
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	7 cut(s)	25, 167, 224, 344, 383, 587, 1139
FspBI	CTAG	2 cut(s)	743, 1074
FspI	TGCGCA	1 cut(s)	917
GlaI	GCGC	3 cut(s)	222, 381, 917
GluI	GCNGC	7 cut(s)	25, 167, 224, 344, 383, 587, 1139
GsaI	CCCAGC	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	541
HaeII	RGCGCY	2 cut(s)	224, 383
HaeIII	GGCC	1 cut(s)	662
HgaI	GACGC	2 cut(s)	628, 1237
HhaI	GCGC	3 cut(s)	223, 382, 918
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	7 cut(s)	395, 445, 450, 553, 614, 799, 1112
Hin6I	GCGC	3 cut(s)	221, 380, 916
HinP1I	GCGC	3 cut(s)	221, 380, 916
HphI	GGTGA	2 cut(s)	506, 713
Hpy166II	GTNNAC	3 cut(s)	772, 833, 1171
Hpy188I	TCNGA	5 cut(s)	205, 370, 509, 579, 720
Hpy188III	TCNNGA	6 cut(s)	404, 442, 543, 643, 796, 990
Hpy8I	GTNNAC	3 cut(s)	772, 833, 1171
HpyAV	CCTTC	2 cut(s)	370, 1205
HpyCH4III	ACNGT	2 cut(s)	64, 1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 232, 668, 1144
HpyF3I	CTNAG	7 cut(s)	32, 159, 432, 657, 672, 717, 1148
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	7 cut(s)	395, 445, 450, 553, 614, 799, 1112
HspAI	GCGC	3 cut(s)	221, 380, 916
Kzo9I	GATC	1 cut(s)	592
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	6 cut(s)	153, 210, 330, 369, 573, 1125
LweI	GCATC	1 cut(s)	835
MaeI	CTAG	2 cut(s)	743, 1074
MaeIII	GTNAC	4 cut(s)	304, 566, 616, 965
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	9 cut(s)	46, 76, 284, 323, 326, 430, 691, 902, 1220
MhlI	GDGCHC	2 cut(s)	514, 835
MluCI	AATT	6 cut(s)	350, 407, 482, 730, 920, 1077
MlyI	GAGTC	3 cut(s)	166, 424, 548
MnlI	CCTC	9 cut(s)	456, 528, 557, 652, 758, 810, 918, 1053, 1147
MseI	TTAA	3 cut(s)	1092, 1232, 1276
MslI	CAYNNNNRTG	3 cut(s)	423, 519, 794
MspA1I	CMGCKG	3 cut(s)	327, 586, 656
MspR9I	CCNGG	6 cut(s)	38, 559, 664, 699, 776, 1020
MvaI	CCWGG	6 cut(s)	38, 559, 664, 699, 776, 1020
MvnI	CGCG	2 cut(s)	597, 1133
MwoI	GCNNNNNNNGC	4 cut(s)	33, 232, 668, 1144
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	7 cut(s)	395, 445, 450, 553, 614, 799, 1112
NlaIV	GGNNCC	1 cut(s)	976
NmuCI	GTSAC	3 cut(s)	304, 616, 965
NsbI	TGCGCA	1 cut(s)	917
OliI	CACNNNNGTG	1 cut(s)	519
PagI	TCATGA	2 cut(s)	441, 795
PceI	AGGCCT	1 cut(s)	662
PfeI	GAWTC	7 cut(s)	15, 119, 321, 365, 535, 706, 901
PkrI	GCNGC	7 cut(s)	26, 168, 225, 345, 384, 588, 1140
PleI	GAGTC	3 cut(s)	166, 424, 548
PpsI	GAGTC	3 cut(s)	166, 424, 548
PshBI	ATTAAT	1 cut(s)	1232
Psp124BI	GAGCTC	1 cut(s)	514
Psp6I	CCWGG	6 cut(s)	36, 557, 662, 697, 774, 1018
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	6 cut(s)	36, 557, 662, 697, 774, 1018
PspN4I	GGNNCC	1 cut(s)	976
PspPI	GGNCC	3 cut(s)	864, 974, 997
PstI	CTGCAG	3 cut(s)	171, 387, 591
PstNI	CAGNNNCTG	2 cut(s)	166, 724
PvuII	CAGCTG	2 cut(s)	327, 656
RsaI	GTAC	3 cut(s)	773, 1170, 1200
RsaNI	GTAC	3 cut(s)	772, 1169, 1199
RseI	CAYNNNNRTG	3 cut(s)	423, 519, 794
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	1092, 1232, 1276
SatI	GCNGC	7 cut(s)	25, 167, 224, 344, 383, 587, 1139
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	3 cut(s)	864, 974, 997
ScaI	AGTACT	1 cut(s)	1200
SchI	GAGTC	3 cut(s)	166, 424, 548
ScrFI	CCNGG	6 cut(s)	38, 559, 664, 699, 776, 1020
SduI	GDGCHC	2 cut(s)	514, 835
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	3 cut(s)	167, 383, 587
SinI	GGWCC	3 cut(s)	864, 974, 997
SmiMI	CAYNNNNRTG	3 cut(s)	423, 519, 794
Sse9I	AATT	6 cut(s)	350, 407, 482, 730, 920, 1077
SseBI	AGGCCT	1 cut(s)	662
SsiI	CCGC	4 cut(s)	25, 584, 597, 848
SspMI	CTAG	2 cut(s)	743, 1074
SstI	GAGCTC	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	662
StyD4I	CCNGG	6 cut(s)	36, 557, 662, 697, 774, 1018
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	64, 1036
TaqI	TCGA	6 cut(s)	18, 183, 491, 542, 854, 1206
TasI	AATT	6 cut(s)	350, 407, 482, 730, 920, 1077
TatI	WGTACW	2 cut(s)	1168, 1198
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	7 cut(s)	15, 119, 321, 365, 535, 706, 901
Tru1I	TTAA	3 cut(s)	1092, 1232, 1276
Tru9I	TTAA	3 cut(s)	1092, 1232, 1276
TscAI	CASTG	5 cut(s)	67, 313, 888, 1068, 1250
TseFI	GTSAC	3 cut(s)	304, 616, 965
TseI	GCWGC	6 cut(s)	166, 223, 343, 382, 586, 1138
Tsp45I	GTSAC	3 cut(s)	304, 616, 965
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	5 cut(s)	67, 313, 888, 1068, 1250
VneI	GTGCAC	1 cut(s)	831
VpaK11BI	GGWCC	3 cut(s)	864, 974, 997
VspI	ATTAAT	1 cut(s)	1232
XapI	RAATTY	4 cut(s)	350, 407, 482, 920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	660
XspI	CTAG	2 cut(s)	743, 1074
ZrmI	AGTACT	1 cut(s)	1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.