Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8291233.1

Orthogroup ID

OG0016162

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 845

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8291233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 844 bp

atgcggggtagaaatgtggtttcatggagtgcaatcatttctgggcttgctgtgaatgggcatggcagagacgctgttgaagcgttttgtgagatgcagagaatgggggttttacctgatgaacagacttttactggcgttctttcggcttgcagtcattgtgggttggttgatgaagcaatggatatttttgattgcatgagcaaagagtttggagtagtgcctaatgtccatcactatgggtgcttggttgatcttttgggtcgggctggtcgactcgatcaagcatatcagcttataatgtcgatggatatgaaaccagattcaaagatatggagaaccttacttggggcttgcaagattcataactatgaaacccttggggaacgtgcggtggatcatttgatcgaactcaaggctctagaggcaggggactatgttctgttgatgaatatttactcttcggctgaaaactgggagaaattagctgaattgaggaagtttatgaaggaaaaagcaattcaaactacaccaggctgcagcacagttatactgaatggaacagtccatgagtttttggtggatgatgtttcgcatccaaggaaggacgaaatctacagaatgctggatgagatcaatagtcagctgaagattgctggttatgttgctgatgtatcatcagaactgcacaagttggggacagaagagaagggatatgcactctcttatcacagcgagaaattagctattgcttttggagtgctggcaactccacccggcacgacaattagagtggccaagaatcttcgcacttgtgttgattgccacaactttgcgaggattc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_1 PPR_2

Protein Analysis

281

Amino Acids

31.24

Weight (kDa)

5.77

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47530
fragaria_vesca	FvH4_5g14900
malus_domestica	MD06G1193700.v1.1 MD14G1200800.v1.1
prunus_persica	Prupe.5G194000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181481
rosa_laevigata	RLG00000005190
rosa_multiflora	Rmu_co8291233.1_g000001 Rmu_sc0002060.1_g000023
rosa_roxburghii	Rroxscaffold_3G00271960
rosa_rugosa	Rorug06G0441700
rosa_samantha	Rh7AG043500 Rh7BG042900 Rh7CG044700
rosa_wichuraiana	Rw7G003620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	2 cut(s)	4, 392
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	795
AcuI	CTGAAG	1 cut(s)	668
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	80, 327, 524
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	4 cut(s)	295, 488, 646, 746
AluI	AGCT	4 cut(s)	295, 488, 646, 746
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	795
ApeKI	GCWGC	2 cut(s)	537, 540
AsuC2I	CCSGG	1 cut(s)	777
BalI	TGGCCA	1 cut(s)	797
BbvI	GCAGC	2 cut(s)	524, 552
BccI	CCATC	2 cut(s)	240, 301
BciT130I	CCWGG	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	2 cut(s)	538, 616
BisI	GCNGC	2 cut(s)	538, 541
BlsI	GCNGC	2 cut(s)	539, 542
Bme1390I	CCNGG	2 cut(s)	534, 777
BmrFI	CCNGG	2 cut(s)	534, 777
BmrI	ACTGGG	1 cut(s)	484
BmsI	GCATC	2 cut(s)	84, 604
BmuI	ACTGGG	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	379, 599
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	139, 479
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	379, 599
BseGI	GGATG	3 cut(s)	589, 595, 634
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	139, 479
BseXI	GCAGC	2 cut(s)	524, 552
BsgI	GTGCAG	1 cut(s)	671
BshFI	GGCC	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	777
BslFI	GGGAC	2 cut(s)	446, 712
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	2 cut(s)	446, 712
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	797
Bsp143I	GATC	5 cut(s)	253, 280, 397, 405, 633
BspACI	CCGC	2 cut(s)	4, 392
BspANI	GGCC	1 cut(s)	797
BspMAI	CTGCAG	1 cut(s)	542
BspPI	GGATC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	139, 479
BssECI	CCNNGG	2 cut(s)	379, 599
BssMI	GATC	5 cut(s)	253, 280, 397, 405, 633
BssT1I	CCWWGG	2 cut(s)	379, 599
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	547, 565
Bst6I	CTCTTC	2 cut(s)	466, 699
BstC8I	GCNNGC	4 cut(s)	48, 151, 355, 765
BstF5I	GGATG	3 cut(s)	589, 595, 634
BstKTI	GATC	5 cut(s)	256, 283, 400, 408, 636
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	5 cut(s)	253, 280, 397, 405, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 425
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	2 cut(s)	532, 775
BstSFI	CTRYAG	2 cut(s)	538, 616
BstV1I	GCAGC	2 cut(s)	524, 552
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	797
BtsCI	GGATG	3 cut(s)	589, 595, 634
Cac8I	GCNNGC	4 cut(s)	48, 151, 355, 765
CseI	GACGC	1 cut(s)	80
CspCI	CAANNNNNGTGG	2 cut(s)	774, 809
CviAII	CATG	4 cut(s)	24, 62, 199, 569
DpnI	GATC	5 cut(s)	255, 282, 399, 407, 635
DpnII	GATC	5 cut(s)	253, 280, 397, 405, 633
EaeI	YGGCCR	1 cut(s)	795
Eam1104I	CTCTTC	2 cut(s)	466, 699
EarI	CTCTTC	2 cut(s)	466, 699
Eco130I	CCWWGG	2 cut(s)	379, 599
Eco57I	CTGAAG	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	379, 599
ErhI	CCWWGG	2 cut(s)	379, 599
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	4 cut(s)	27, 65, 202, 572
FaqI	GGGAC	2 cut(s)	446, 712
FatI	CATG	4 cut(s)	23, 61, 198, 568
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	538, 541
FokI	GGATG	3 cut(s)	582, 596, 641
Fsp4HI	GCNGC	2 cut(s)	538, 541
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	2 cut(s)	538, 541
HaeIII	GGCC	1 cut(s)	797
HapII	CCGG	1 cut(s)	777
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	4 cut(s)	27, 65, 202, 572
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HinfI	GANTC	5 cut(s)	276, 323, 361, 802, 841
HpaII	CCGG	1 cut(s)	777
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	1 cut(s)	682
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	502, 598, 703
HpyCH4III	ACNGT	2 cut(s)	547, 565
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	8 cut(s)	32, 97, 153, 198, 357, 540, 688, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 425
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	4 cut(s)	27, 65, 202, 572
Kzo9I	GATC	5 cut(s)	253, 280, 397, 405, 633
Lsp1109I	GCAGC	2 cut(s)	524, 552
LweI	GCATC	2 cut(s)	84, 604
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	388
MalI	GATC	5 cut(s)	255, 282, 399, 407, 635
MboI	GATC	5 cut(s)	253, 280, 397, 405, 633
MboII	GAAGA	4 cut(s)	453, 661, 716, 797
MlsI	TGGCCA	1 cut(s)	797
MluCI	AATT	5 cut(s)	482, 491, 519, 740, 786
MluNI	TGGCCA	1 cut(s)	797
MlyI	GAGTC	1 cut(s)	270
MnlI	CCTC	3 cut(s)	418, 489, 831
Mox20I	TGGCCA	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	797
MslI	CAYNNNNRTG	2 cut(s)	237, 369
Msp20I	TGGCCA	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	646
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	2 cut(s)	534, 777
Mva1269I	GAATGC	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	80, 425
NciI	CCSGG	1 cut(s)	777
NdeII	GATC	5 cut(s)	253, 280, 397, 405, 633
NlaIII	CATG	4 cut(s)	27, 65, 202, 572
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PctI	GAATGC	1 cut(s)	627
PfeI	GAWTC	4 cut(s)	323, 361, 802, 841
PkrI	GCNGC	2 cut(s)	539, 542
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	646
RseI	CAYNNNNRTG	2 cut(s)	237, 369
SalI	GTCGAC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	538, 541
Sau3AI	GATC	5 cut(s)	253, 280, 397, 405, 633
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	534, 777
SetI	ASST	7 cut(s)	118, 297, 344, 391, 490, 648, 748
SfaNI	GCATC	2 cut(s)	84, 604
SfcI	CTRYAG	2 cut(s)	538, 616
SmiMI	CAYNNNNRTG	2 cut(s)	237, 369
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	5 cut(s)	482, 491, 519, 740, 786
SsiI	CCGC	2 cut(s)	4, 392
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	532, 775
StyI	CCWWGG	2 cut(s)	379, 599
TaaI	ACNGT	2 cut(s)	547, 565
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	4 cut(s)	274, 279, 305, 408
TasI	AATT	5 cut(s)	482, 491, 519, 740, 786
TfiI	GAWTC	4 cut(s)	323, 361, 802, 841
TseI	GCWGC	2 cut(s)	537, 540
TspDTI	ATGAA	8 cut(s)	12, 135, 189, 329, 353, 387, 464, 521
XbaI	TCTAGA	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	274
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.