Rw7G003620

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
2962627 .. 2964544
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G003620.1

Sequence Viewer

Length: 1818 bp
ATGACCGCAATCTCACACCCCCTGCGCTCAAGCTGTGGCCGTCTCAAAGACCACAACATCTCTTGTACTCGTTTCACCTCCACCCTCTCCTCACTCGTCACCACCAACCCAAAACCCTTCAACTCTCCAAAACCCCATCACCACCAAAACCAGACCAAACCCATCATCCCCTATACTCAAACCCTCAAAGACTCCCTCCTCTCCCTCATCAAATCATGCACCCACAAATCCCATTTGCTCCAAATCCACGCCCACATTCTCCAAACCTCTCTCATTCTCGACTCCTCAATCTGCTTCCACTTCTTGTCCCTCGTTTCGCTTTCCCCACCTTTCCAAAACTTGACCTATTCCCGCCAATTCTTGTTTCAAATTCCCAAACCCAAAGCCATTCACTACAACACTGTGATAAGAGCTTACTCAATCAGTGATTCACCCCAGGAGGGGATTCATCTTTACCTTGATTTGAGGCGGCGAGGTCTTGGTGGCAACGCTTTCTCGTCCTCTTTCGTAATGAAATGTTGTGTTAGAGCCAAGTACTTATTAGGAGGAATTCAGGTTCAGGCTAGGATTGTGAGAGATGGGCAGCAATCAGACAGTCGTTTACTCACGACTTTGATGGGCCTGTACTCGATTTGTGGCGAGTTTGATGATGCATGTAAGGTGTTCGACGAAATTCTTCACAGAGACACTGTTGCCTGGAATGTGTTGATTTCTTGTTTTCTGCATAACAGCCGCAGCAGGGATGCTTTGGGTTTGTTTGACATTATGCGGAGCGAAAGTTACAGATGTGAGCCTGATGATGTTACTTGTTTACTTATGCTCCAGGCTTGTGCAAGCTTGAATGCGTTGGAGTTTGGCCAAAGGGTTCATAGGTACATTGAAGAACATGGTTATATTGGTGCTTCTAATCTCTGTAATGCTCTTATAACTATGTATTCGCGGTGTGGGTGTTTGGATCAGGCTTATGAGGTGTTTAAGGGGATGCGGGGTAGAAATGTGGTTTCATGGAGTGCAATCATTTCTGGGCTTGCTGTGAATGGGCATGGCAGAGACGCTGTTGAAGCATTTTGTGAGATGCAGAGAATGGGGGTTTTACCTGATGAACAGACTTTTACTGGCGTTCTTTCGGCTTGCAGTCATTGTGGGTTGGTTGATGAAGCAATGGATATTTTTGATCGCATGAGCAAAGAATTTGGAGTAGTGCCTAATGTCCATCACTATGGGTGCTTGGTTGATCTTTTGGGTCGGGCTGGTCGACTAGATCAAGCATATCAGCTTATAATGTCGATGGATATGAAACCAGATTCAAAGATATGGAGAACCTTACTTGGGGCTTGCAAGATTCATAACTATGAAACCCTTGGGGAACGTGCGGTGGATCATTTGATCGAACTCAAGGCTCTAGAGGCAGGGGACTATGTTCTGTTGATGAATATTTACTCTTCGGCTGAAAACTGGGAGAAATTAGCTGAATTGAGGAAGAAGGACGAAATCTACAGAATGCTGGATGAGATCAATAGTCAGCTGAAGATTGCTGGTTATGTTGCTGATGTATCATCAGAACTGCACAAGTTGGGGACAGAAGAGAAGGGATATGCACTCTCTTTTCACAGCGAGAAATTAGCTATTGCTTTTGGAGTGCTGGCAACTCCACCCGGCACGACAATTAGAGTGGCCAAGAATCTTCGCACTTGTGTTGATTGCCACAACTTTGCGAGGATTCTCTCAGGGGTTTATAACAGGACGGTAATTGTGAGAGACCGCAGCCGGTTTCATCATTTTCGGGAGGGACGCTGCTCGTGCAATGGCTATTGGTAG

Protein Analysis

605

Amino Acids

68.17

Weight (kDa)

8.32

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 228 - 278 1.4e-08 PPR repeat family
PPR_long PF17177 303 - 428 5.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 331 - 379 1e-11 PPR repeat family
PPR PF01535 334 - 364 5.4e-06 PPR repeat
E_motif PF20431 451 - 495 1.1e-07 E motif
DYW_deaminase PF14432 513 - 605 2.9e-34 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47530
fragaria_vesca FvH4_5g14900
malus_domestica MD06G1193700.v1.1 MD14G1200800.v1.1
prunus_persica Prupe.5G194000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0181481
rosa_laevigata RLG00000005190
rosa_multiflora Rmu_co8291233.1_g000001 Rmu_sc0002060.1_g000023
rosa_roxburghii Rroxscaffold_3G00271960
rosa_rugosa Rorug06G0441700
rosa_samantha Rh7AG043500 Rh7BG042900 Rh7CG044700
rosa_wichuraiana Rw7G003620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 926, 1280, 1737
AccI GTMKAC 1 cut(s) 1255
AccII CGCG 1 cut(s) 940
AciI CCGC 9 cut(s) 6, 352, 469, 733, 769, 940, 985, 1373, 1762
AclWI GGATC 2 cut(s) 963, 1386
AcoI YGGCCR 3 cut(s) 37, 856, 1674
AcsI RAATTY 4 cut(s) 369, 549, 672, 1190
AcuI CTGAAG 1 cut(s) 1547
AfaI GTAC 4 cut(s) 67, 536, 626, 875
AfiI CCNNNNNNNGG 4 cut(s) 440, 441, 739, 1329
AgsI TTSAA 6 cut(s) 121, 368, 841, 881, 1061, 1308
AjnI CCWGG 3 cut(s) 435, 695, 822
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AloI GAACNNNNNNTCC 2 cut(s) 540, 572
AluBI AGCT 7 cut(s) 33, 413, 837, 1276, 1469, 1525, 1625
AluI AGCT 7 cut(s) 33, 413, 837, 1276, 1469, 1525, 1625
Alw26I GTCTC 4 cut(s) 47, 678, 1044, 1752
AlwI GGATC 2 cut(s) 963, 1386
AoxI GGCC 4 cut(s) 37, 619, 856, 1674
ApeKI GCWGC 4 cut(s) 583, 735, 1764, 1794
ApoI RAATTY 4 cut(s) 369, 549, 672, 1190
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 619
AsuC2I CCSGG 1 cut(s) 1656
AsuHPI GGTGA 4 cut(s) 67, 91, 131, 423
BalI TGGCCA 2 cut(s) 858, 1676
BauI CACGAG 1 cut(s) 1798
BbvI GCAGC 4 cut(s) 595, 747, 1776, 1781
BccI CCATC 6 cut(s) 144, 170, 572, 610, 1221, 1282
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 3 cut(s) 437, 697, 824
BcnI CCSGG 1 cut(s) 1656
BcoDI GTCTC 4 cut(s) 47, 678, 1044, 1752
BfaI CTAG 3 cut(s) 564, 1259, 1403
BfmI CTRYAG 1 cut(s) 1495
BisI GCNGC 6 cut(s) 470, 584, 733, 736, 1765, 1795
BlsI GCNGC 6 cut(s) 471, 585, 734, 737, 1766, 1796
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 4 cut(s) 437, 697, 824, 1656
BmgT120I GGNCC 1 cut(s) 619
BmrFI CCNGG 4 cut(s) 437, 697, 824, 1656
BmrI ACTGGG 1 cut(s) 1465
BmsI GCATC 4 cut(s) 640, 733, 972, 1065
BmuI ACTGGG 1 cut(s) 1465
BpmI CTGGAG 1 cut(s) 806
BpuEI CTTGAG 2 cut(s) 13, 1379
BpuMI CCSGG 1 cut(s) 1656
BsaI GGTCTC 1 cut(s) 1752
BsaJI CCNNGG 2 cut(s) 435, 1360
BsaXI ACNNNNNCTCC 4 cut(s) 763, 793, 804, 834
Bsc4I CCNNNNNNNGG 4 cut(s) 440, 441, 739, 1329
Bse118I RCCGGY 1 cut(s) 1767
Bse1I ACTGG 2 cut(s) 1120, 1460
Bse3DI GCAATG 2 cut(s) 1167, 1810
BseBI CCWGG 3 cut(s) 437, 697, 824
BseDI CCNNGG 2 cut(s) 435, 1360
BseGI GGATG 4 cut(s) 165, 748, 987, 1513
BseLI CCNNNNNNNGG 4 cut(s) 440, 441, 739, 1329
BseMI GCAATG 2 cut(s) 1167, 1810
BseMII CTCAG 1 cut(s) 1740
BseNI ACTGG 2 cut(s) 1120, 1460
BseRI GAGGAG 3 cut(s) 79, 188, 274
BseXI GCAGC 4 cut(s) 595, 747, 1776, 1781
BsgI GTGCAG 1 cut(s) 1550
Bsh1236I CGCG 1 cut(s) 940
BshFI GGCC 4 cut(s) 39, 621, 858, 1676
BsiSI CCGG 2 cut(s) 1656, 1768
BslFI GGGAC 4 cut(s) 292, 1427, 1591, 1803
BslI CCNNNNNNNGG 4 cut(s) 440, 441, 739, 1329
BsmAI GTCTC 4 cut(s) 47, 678, 1044, 1752
BsmBI CGTCTC 2 cut(s) 47, 1044
BsmFI GGGAC 4 cut(s) 292, 1427, 1591, 1803
BsmI GAATGC 2 cut(s) 847, 1506
BsnI GGCC 4 cut(s) 39, 621, 858, 1676
Bso31I GGTCTC 1 cut(s) 1752
Bsp143I GATC 7 cut(s) 955, 1174, 1234, 1261, 1378, 1386, 1512
BspACI CCGC 9 cut(s) 6, 352, 469, 733, 769, 940, 985, 1373, 1762
BspANI GGCC 4 cut(s) 39, 621, 858, 1676
BspCNI CTCAG 1 cut(s) 1739
BspFNI CGCG 1 cut(s) 940
BspPI GGATC 2 cut(s) 963, 1386
BspTNI GGTCTC 1 cut(s) 1752
BsrDI GCAATG 2 cut(s) 1167, 1810
BsrFI RCCGGY 1 cut(s) 1767
BsrI ACTGG 2 cut(s) 1120, 1460
BssAI RCCGGY 1 cut(s) 1767
BssECI CCNNGG 2 cut(s) 435, 1360
BssMI GATC 7 cut(s) 955, 1174, 1234, 1261, 1378, 1386, 1512
BssSI CACGAG 1 cut(s) 1798
BssT1I CCWWGG 1 cut(s) 1360
Bst2BI CACGAG 1 cut(s) 1798
Bst2UI CCWGG 3 cut(s) 437, 697, 824
Bst4CI ACNGT 4 cut(s) 403, 596, 691, 1747
Bst6I CTCTTC 2 cut(s) 1447, 1578
BstC8I GCNNGC 5 cut(s) 835, 1029, 1132, 1336, 1644
BstDEI CTNAG 1 cut(s) 1726
BstF5I GGATG 4 cut(s) 165, 748, 987, 1513
BstFNI CGCG 1 cut(s) 940
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 7 cut(s) 958, 1177, 1237, 1264, 1381, 1389, 1515
BstMAI GTCTC 4 cut(s) 47, 678, 1044, 1752
BstMBI GATC 7 cut(s) 955, 1174, 1234, 1261, 1378, 1386, 1512
BstMWI GCNNNNNNNGC 3 cut(s) 1061, 1406, 1800
BstNI CCWGG 3 cut(s) 437, 697, 824
BstNSI RCATGY 1 cut(s) 657
BstSCI CCNGG 4 cut(s) 435, 695, 822, 1654
BstSFI CTRYAG 1 cut(s) 1495
BstUI CGCG 1 cut(s) 940
BstV1I GCAGC 4 cut(s) 595, 747, 1776, 1781
BstXI CCANNNNNNTGG 1 cut(s) 1220
BsuRI GGCC 4 cut(s) 39, 621, 858, 1676
BtsCI GGATG 4 cut(s) 165, 748, 987, 1513
BtsIMutI CAGTG 3 cut(s) 399, 430, 687
Cac8I GCNNGC 5 cut(s) 835, 1029, 1132, 1336, 1644
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 1767
Cfr13I GGNCC 1 cut(s) 619
CseI GACGC 2 cut(s) 1061, 1800
Csp6I GTAC 4 cut(s) 66, 535, 625, 874
CspCI CAANNNNNGTGG 2 cut(s) 1653, 1688
CviAII CATG 6 cut(s) 216, 654, 887, 1005, 1043, 1180
CviQI GTAC 4 cut(s) 66, 535, 625, 874
DdeI CTNAG 1 cut(s) 1726
DpnI GATC 7 cut(s) 957, 1176, 1236, 1263, 1380, 1388, 1514
DpnII GATC 7 cut(s) 955, 1174, 1234, 1261, 1378, 1386, 1512
EaeI YGGCCR 3 cut(s) 37, 856, 1674
Eam1104I CTCTTC 2 cut(s) 1447, 1578
EarI CTCTTC 2 cut(s) 1447, 1578
Eco130I CCWWGG 1 cut(s) 1360
Eco31I GGTCTC 1 cut(s) 1752
Eco57I CTGAAG 1 cut(s) 1547
EcoRI GAATTC 1 cut(s) 549
EcoRII CCWGG 3 cut(s) 435, 695, 822
EcoT14I CCWWGG 1 cut(s) 1360
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 1360
Esp3I CGTCTC 2 cut(s) 47, 1044
FaeI CATG 6 cut(s) 219, 657, 890, 1008, 1046, 1183
FaqI GGGAC 4 cut(s) 292, 1427, 1591, 1803
FatI CATG 6 cut(s) 215, 653, 886, 1004, 1042, 1179
FauI CCCGC 2 cut(s) 359, 978
FblI GTMKAC 1 cut(s) 1255
Fnu4HI GCNGC 6 cut(s) 470, 584, 733, 736, 1765, 1795
FokI GGATG 4 cut(s) 152, 755, 994, 1520
Fsp4HI GCNGC 6 cut(s) 470, 584, 733, 736, 1765, 1795
FspBI CTAG 3 cut(s) 564, 1259, 1403
GlaI GCGC 1 cut(s) 26
GluI GCNGC 6 cut(s) 470, 584, 733, 736, 1765, 1795
GsuI CTGGAG 1 cut(s) 806
HaeIII GGCC 4 cut(s) 39, 621, 858, 1676
HapII CCGG 2 cut(s) 1656, 1768
HgaI GACGC 2 cut(s) 1061, 1800
HhaI GCGC 1 cut(s) 27
Hin1II CATG 6 cut(s) 219, 657, 890, 1008, 1046, 1183
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HincII GTYRAC 1 cut(s) 1256
HindII GTYRAC 1 cut(s) 1256
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 8 cut(s) 191, 281, 428, 445, 1304, 1342, 1681, 1720
HpaII CCGG 2 cut(s) 1656, 1768
HphI GGTGA 4 cut(s) 67, 91, 131, 423
Hpy166II GTNNAC 3 cut(s) 602, 812, 1256
Hpy188I TCNGA 2 cut(s) 592, 1561
Hpy188III TCNNGA 4 cut(s) 278, 607, 1403, 1784
Hpy8I GTNNAC 3 cut(s) 602, 812, 1256
Hpy99I CGWCG 1 cut(s) 671
HpyAV CCTTC 3 cut(s) 127, 1477, 1582
HpyCH4III ACNGT 4 cut(s) 403, 596, 691, 1747
HpyCH4IV ACGT 1 cut(s) 1369
HpyF10VI GCNNNNNNNGC 3 cut(s) 1061, 1406, 1800
HpyF3I CTNAG 1 cut(s) 1726
HpySE526I ACGT 1 cut(s) 1369
Hsp92II CATG 6 cut(s) 219, 657, 890, 1008, 1046, 1183
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 7 cut(s) 955, 1174, 1234, 1261, 1378, 1386, 1512
LmnI GCTCC 3 cut(s) 243, 771, 825
Lsp1109I GCAGC 4 cut(s) 595, 747, 1776, 1781
LweI GCATC 4 cut(s) 640, 733, 972, 1065
MaeI CTAG 3 cut(s) 564, 1259, 1403
MaeII ACGT 1 cut(s) 1369
MaeIII GTNAC 3 cut(s) 97, 779, 802
MalI GATC 7 cut(s) 957, 1176, 1236, 1263, 1380, 1388, 1514
MboI GATC 7 cut(s) 955, 1174, 1234, 1261, 1378, 1386, 1512
MboII GAAGA 7 cut(s) 668, 893, 1434, 1492, 1540, 1595, 1676
MlsI TGGCCA 2 cut(s) 858, 1676
MluNI TGGCCA 2 cut(s) 858, 1676
MlyI GAGTC 2 cut(s) 185, 275
MmeI TCCRAC 1 cut(s) 828
Mox20I TGGCCA 2 cut(s) 858, 1676
Mph1103I ATGCAT 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 2 cut(s) 858, 1676
MseI TTAA 1 cut(s) 975
MslI CAYNNNNRTG 2 cut(s) 1218, 1350
Msp20I TGGCCA 2 cut(s) 858, 1676
MspA1I CMGCKG 1 cut(s) 1525
MspI CCGG 2 cut(s) 1656, 1768
MspR9I CCNGG 4 cut(s) 437, 697, 824, 1656
Mva1269I GAATGC 2 cut(s) 847, 1506
MvaI CCWGG 3 cut(s) 437, 697, 824
MvnI CGCG 1 cut(s) 940
MwoI GCNNNNNNNGC 3 cut(s) 1061, 1406, 1800
NciI CCSGG 1 cut(s) 1656
NdeII GATC 7 cut(s) 955, 1174, 1234, 1261, 1378, 1386, 1512
NlaIII CATG 6 cut(s) 219, 657, 890, 1008, 1046, 1183
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 1252
PctI GAATGC 2 cut(s) 847, 1506
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 6 cut(s) 428, 445, 1304, 1342, 1681, 1720
PkrI GCNGC 6 cut(s) 471, 585, 734, 737, 1766, 1796
PleI GAGTC 2 cut(s) 185, 275
PpsI GAGTC 2 cut(s) 185, 275
PsiI TTATAA 3 cut(s) 926, 1280, 1737
Psp6I CCWGG 3 cut(s) 435, 695, 822
PspGI CCWGG 3 cut(s) 435, 695, 822
PspPI GGNCC 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 1525
RsaI GTAC 4 cut(s) 67, 536, 626, 875
RsaNI GTAC 4 cut(s) 66, 535, 625, 874
RseI CAYNNNNRTG 2 cut(s) 1218, 1350
SalI GTCGAC 1 cut(s) 1254
SaqAI TTAA 1 cut(s) 975
SatI GCNGC 6 cut(s) 470, 584, 733, 736, 1765, 1795
Sau3AI GATC 7 cut(s) 955, 1174, 1234, 1261, 1378, 1386, 1512
Sau96I GGNCC 1 cut(s) 619
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 2 cut(s) 185, 275
ScrFI CCNGG 4 cut(s) 437, 697, 824, 1656
SfaNI GCATC 4 cut(s) 640, 733, 972, 1065
SfcI CTRYAG 1 cut(s) 1495
SmiMI CAYNNNNRTG 2 cut(s) 1218, 1350
SmlI CTYRAG 2 cut(s) 28, 1394
SmoI CTYRAG 2 cut(s) 28, 1394
SsiI CCGC 9 cut(s) 6, 352, 469, 733, 769, 940, 985, 1373, 1762
SspI AATATT 1 cut(s) 1435
SspMI CTAG 3 cut(s) 564, 1259, 1403
StyD4I CCNGG 4 cut(s) 435, 695, 822, 1654
StyI CCWWGG 1 cut(s) 1360
TaaI ACNGT 4 cut(s) 403, 596, 691, 1747
TaiI ACGT 1 cut(s) 1372
TaqI TCGA 6 cut(s) 279, 629, 666, 1255, 1286, 1389
TatI WGTACW 3 cut(s) 65, 534, 624
TauI GCSGC 2 cut(s) 472, 735
TfiI GAWTC 6 cut(s) 428, 445, 1304, 1342, 1681, 1720
Tru1I TTAA 1 cut(s) 975
Tru9I TTAA 1 cut(s) 975
TscAI CASTG 3 cut(s) 406, 430, 694
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 4 cut(s) 583, 735, 1764, 1794
Tsp45I GTSAC 1 cut(s) 97
TspRI CASTG 3 cut(s) 406, 430, 694
XapI RAATTY 4 cut(s) 369, 549, 672, 1190
XbaI TCTAGA 1 cut(s) 1402
XceI RCATGY 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 1255
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 3 cut(s) 564, 1259, 1403
ZrmI AGTACT 1 cut(s) 536
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.