Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002060.1

Orthogroup ID

OG0016162

Physical Location & Seq

Genomic Coordinates Forward (+)

90440 .. 92359

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002060.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

atgaccacaatctcacaccccctgcgctcaagctgtggccgtctcaaagaccacaacatctcttgtactcgtttcacctccaccctctcctcactcgtcaccaccaacccaaaacccttcaactctccaaaaccccatcaccaccaaaaccagaccaaacccatcatcccctatactcaaaccctcaaagactccctcctctccctcatcaaatcatgcacccacaaatcccatttgctccaaatccacgcccacattctccaaacctctctcattctcgactcctcaatctgcttccacttcttgtccctcgtttcgctttccccacctttccaaaacttgacctattcccgccaattcttgtttcaaattcccaaacccaaagccattcactacaacactgtgattagagcttactcaatcagtgattcaccccaggaggggattcatctttaccttgatttgaggcggcgaggtcttggtagcaacgctttctcgtcctctttcgtaatgaaatgttgtgttagagtcaagtacttgttaggaggaattcaggttcaggctaggattgtgagagatgggcagcaatcagacagtcgtttactcacgactttgatggacctgtactcgatttgtggcgagtttgatgatgcatgtaaggtgttcgacgaaattcttcacagagacactgttgcctggaatgtgttgatttcttgttttctgcttaacagccgcagcagggatgctttgggtttgtttgacattatgcggagcgaaagttacagatgtgagcctgatgatgttacttgtttacttatgctccaagcttgtgcaagcttgaatgcgttggagtttggccaaagggttcataggtacattgaagaacatggttatattggtgcttctaatctctgtaatgctcttataactatgtattcgcggtgtgggtgtttggatcaggcttatgaggtgtttaaggggatgcggggtagaaatgtggtttcatggagtgcaatcatttctgggcttgctgtgaatgggcatggcagagacgctgttgaagcgttttgtgagatgcagagaatgggggttttacctgatgaacagacttttactggcgttctttcggcttgcagtcattgtgggttggttgatgaagcaatggatatttttgattgcatgagcaaagagtttggagtagtgcctaatgtccatcactatgggtgcttggttgatcttttgggtcgggctggtcgactcgatcaagcatatcagcttataatgtcgatggatatgaaaccagattcaaagatatggagaaccttacttggggcttgcaagattcataactatgaaacccttggggaacgtgcggtggatcatttgatcgaactcaaggctctagaggcaggggactatgttctgttgatgaatatttactcttcggctgaaaactgggagaaattagctgaattgaggaagtttatgaaggaaaaagcaattcaaactacaccaggctgcagcacaattatactgaatggaacagtccatgagtttttggtggatgatgtttcgcatccaaggaaggacgaaatctacagaatgctggatgagatcaatagtcagctgaagattgctggttatgttgctgatgtatcatcagaactgcacaagttggggacagaagagaagggatatgcactctcttatcacagcgagaaattagctattgcttttggagtgctggcaactccacccggcacgacaattagagtggccaagaatcttcgcacttgtgttgattgccacaactttgcgaggattctctcaggggtttataacaggacggtaattgtgagagaccgcagccggtttcatcattttcgggagggacgctgctcgtgcaatggctattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_1 PPR_2

Protein Analysis

639

Amino Acids

72.02

Weight (kDa)

7.92

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47530
fragaria_vesca	FvH4_5g14900
malus_domestica	MD06G1193700.v1.1 MD14G1200800.v1.1
prunus_persica	Prupe.5G194000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181481
rosa_laevigata	RLG00000005190
rosa_multiflora	Rmu_co8291233.1_g000001 Rmu_sc0002060.1_g000023
rosa_roxburghii	Rroxscaffold_3G00271960
rosa_rugosa	Rorug06G0441700
rosa_samantha	Rh7AG043500 Rh7BG042900 Rh7CG044700
rosa_wichuraiana	Rw7G003620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	926, 1280, 1839
AccI	GTMKAC	1 cut(s)	1255
AccII	CGCG	1 cut(s)	940
AciI	CCGC	8 cut(s)	352, 469, 733, 769, 940, 985, 1373, 1864
AclWI	GGATC	2 cut(s)	963, 1386
AcoI	YGGCCR	3 cut(s)	37, 856, 1776
AcsI	RAATTY	3 cut(s)	369, 549, 672
AcuI	CTGAAG	1 cut(s)	1649
AfaI	GTAC	4 cut(s)	67, 536, 626, 875
AfiI	CCNNNNNNNGG	4 cut(s)	440, 441, 739, 1329
AgsI	TTSAA	7 cut(s)	121, 368, 841, 881, 1061, 1308, 1505
AjnI	CCWGG	3 cut(s)	435, 695, 1513
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
AloI	GAACNNNNNNTCC	2 cut(s)	540, 572
AluBI	AGCT	8 cut(s)	33, 413, 827, 837, 1276, 1469, 1627, 1727
AluI	AGCT	8 cut(s)	33, 413, 827, 837, 1276, 1469, 1627, 1727
Alw26I	GTCTC	4 cut(s)	47, 678, 1044, 1854
AlwI	GGATC	2 cut(s)	963, 1386
AoxI	GGCC	3 cut(s)	37, 856, 1776
ApeKI	GCWGC	6 cut(s)	583, 735, 1518, 1521, 1866, 1896
ApoI	RAATTY	3 cut(s)	369, 549, 672
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	619
AsuC2I	CCSGG	1 cut(s)	1758
AsuHPI	GGTGA	4 cut(s)	67, 91, 131, 423
AvaII	GGWCC	1 cut(s)	619
BalI	TGGCCA	2 cut(s)	858, 1778
BauI	CACGAG	1 cut(s)	1900
BbvI	GCAGC	6 cut(s)	595, 747, 1505, 1533, 1878, 1883
BccI	CCATC	6 cut(s)	144, 170, 572, 610, 1221, 1282
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	437, 697, 1515
BcnI	CCSGG	1 cut(s)	1758
BcoDI	GTCTC	4 cut(s)	47, 678, 1044, 1854
BfaI	CTAG	2 cut(s)	564, 1403
BfmI	CTRYAG	2 cut(s)	1519, 1597
BisI	GCNGC	8 cut(s)	470, 584, 733, 736, 1519, 1522, 1867, 1897
BlsI	GCNGC	8 cut(s)	471, 585, 734, 737, 1520, 1523, 1868, 1898
BmcAI	AGTACT	1 cut(s)	536
Bme1390I	CCNGG	4 cut(s)	437, 697, 1515, 1758
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	619
BmrFI	CCNGG	4 cut(s)	437, 697, 1515, 1758
BmrI	ACTGGG	1 cut(s)	1465
BmsI	GCATC	5 cut(s)	640, 733, 972, 1065, 1585
BmuI	ACTGGG	1 cut(s)	1465
BpuEI	CTTGAG	2 cut(s)	13, 1379
BpuMI	CCSGG	1 cut(s)	1758
BsaI	GGTCTC	1 cut(s)	1854
BsaJI	CCNNGG	3 cut(s)	435, 1360, 1580
BsaXI	ACNNNNNCTCC	4 cut(s)	763, 793, 804, 834
Bsc4I	CCNNNNNNNGG	4 cut(s)	440, 441, 739, 1329
Bse118I	RCCGGY	1 cut(s)	1869
Bse1I	ACTGG	2 cut(s)	1120, 1460
Bse3DI	GCAATG	2 cut(s)	1167, 1912
BseBI	CCWGG	3 cut(s)	437, 697, 1515
BseDI	CCNNGG	3 cut(s)	435, 1360, 1580
BseGI	GGATG	6 cut(s)	165, 748, 987, 1570, 1576, 1615
BseLI	CCNNNNNNNGG	4 cut(s)	440, 441, 739, 1329
BseMI	GCAATG	2 cut(s)	1167, 1912
BseMII	CTCAG	1 cut(s)	1842
BseNI	ACTGG	2 cut(s)	1120, 1460
BseRI	GAGGAG	3 cut(s)	79, 188, 274
BseXI	GCAGC	6 cut(s)	595, 747, 1505, 1533, 1878, 1883
BsgI	GTGCAG	1 cut(s)	1652
Bsh1236I	CGCG	1 cut(s)	940
BshFI	GGCC	3 cut(s)	39, 858, 1778
BsiSI	CCGG	2 cut(s)	1758, 1870
BslFI	GGGAC	4 cut(s)	292, 1427, 1693, 1905
BslI	CCNNNNNNNGG	4 cut(s)	440, 441, 739, 1329
BsmAI	GTCTC	4 cut(s)	47, 678, 1044, 1854
BsmBI	CGTCTC	2 cut(s)	47, 1044
BsmFI	GGGAC	4 cut(s)	292, 1427, 1693, 1905
BsmI	GAATGC	2 cut(s)	847, 1608
BsnI	GGCC	3 cut(s)	39, 858, 1778
Bso31I	GGTCTC	1 cut(s)	1854
Bsp143I	GATC	6 cut(s)	955, 1234, 1261, 1378, 1386, 1614
BspACI	CCGC	8 cut(s)	352, 469, 733, 769, 940, 985, 1373, 1864
BspANI	GGCC	3 cut(s)	39, 858, 1778
BspCNI	CTCAG	1 cut(s)	1841
BspFNI	CGCG	1 cut(s)	940
BspMAI	CTGCAG	1 cut(s)	1523
BspPI	GGATC	2 cut(s)	963, 1386
BspTNI	GGTCTC	1 cut(s)	1854
BsrDI	GCAATG	2 cut(s)	1167, 1912
BsrFI	RCCGGY	1 cut(s)	1869
BsrI	ACTGG	2 cut(s)	1120, 1460
BssAI	RCCGGY	1 cut(s)	1869
BssECI	CCNNGG	3 cut(s)	435, 1360, 1580
BssMI	GATC	6 cut(s)	955, 1234, 1261, 1378, 1386, 1614
BssSI	CACGAG	1 cut(s)	1900
BssT1I	CCWWGG	2 cut(s)	1360, 1580
Bst2BI	CACGAG	1 cut(s)	1900
Bst2UI	CCWGG	3 cut(s)	437, 697, 1515
Bst4CI	ACNGT	5 cut(s)	403, 596, 691, 1546, 1849
Bst6I	CTCTTC	2 cut(s)	1447, 1680
BstC8I	GCNNGC	5 cut(s)	835, 1029, 1132, 1336, 1746
BstDEI	CTNAG	1 cut(s)	1828
BstF5I	GGATG	6 cut(s)	165, 748, 987, 1570, 1576, 1615
BstFNI	CGCG	1 cut(s)	940
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	6 cut(s)	958, 1237, 1264, 1381, 1389, 1617
BstMAI	GTCTC	4 cut(s)	47, 678, 1044, 1854
BstMBI	GATC	6 cut(s)	955, 1234, 1261, 1378, 1386, 1614
BstMWI	GCNNNNNNNGC	3 cut(s)	1061, 1406, 1902
BstNI	CCWGG	3 cut(s)	437, 697, 1515
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	4 cut(s)	435, 695, 1513, 1756
BstSFI	CTRYAG	2 cut(s)	1519, 1597
BstUI	CGCG	1 cut(s)	940
BstV1I	GCAGC	6 cut(s)	595, 747, 1505, 1533, 1878, 1883
BstXI	CCANNNNNNTGG	1 cut(s)	1220
BsuRI	GGCC	3 cut(s)	39, 858, 1778
BtsCI	GGATG	6 cut(s)	165, 748, 987, 1570, 1576, 1615
BtsIMutI	CAGTG	3 cut(s)	399, 430, 687
Cac8I	GCNNGC	5 cut(s)	835, 1029, 1132, 1336, 1746
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	1869
Cfr13I	GGNCC	1 cut(s)	619
CseI	GACGC	2 cut(s)	1061, 1902
Csp6I	GTAC	4 cut(s)	66, 535, 625, 874
CspCI	CAANNNNNGTGG	2 cut(s)	1755, 1790
CviAII	CATG	7 cut(s)	216, 654, 887, 1005, 1043, 1180, 1550
CviQI	GTAC	4 cut(s)	66, 535, 625, 874
DdeI	CTNAG	1 cut(s)	1828
DpnI	GATC	6 cut(s)	957, 1236, 1263, 1380, 1388, 1616
DpnII	GATC	6 cut(s)	955, 1234, 1261, 1378, 1386, 1614
EaeI	YGGCCR	3 cut(s)	37, 856, 1776
Eam1104I	CTCTTC	2 cut(s)	1447, 1680
EarI	CTCTTC	2 cut(s)	1447, 1680
Eco130I	CCWWGG	2 cut(s)	1360, 1580
Eco31I	GGTCTC	1 cut(s)	1854
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	1649
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	3 cut(s)	435, 695, 1513
EcoT14I	CCWWGG	2 cut(s)	1360, 1580
EcoT22I	ATGCAT	1 cut(s)	655
ErhI	CCWWGG	2 cut(s)	1360, 1580
Esp3I	CGTCTC	2 cut(s)	47, 1044
FaeI	CATG	7 cut(s)	219, 657, 890, 1008, 1046, 1183, 1553
FaqI	GGGAC	4 cut(s)	292, 1427, 1693, 1905
FatI	CATG	7 cut(s)	215, 653, 886, 1004, 1042, 1179, 1549
FauI	CCCGC	2 cut(s)	359, 978
FblI	GTMKAC	1 cut(s)	1255
Fnu4HI	GCNGC	8 cut(s)	470, 584, 733, 736, 1519, 1522, 1867, 1897
FokI	GGATG	6 cut(s)	152, 755, 994, 1563, 1577, 1622
Fsp4HI	GCNGC	8 cut(s)	470, 584, 733, 736, 1519, 1522, 1867, 1897
FspBI	CTAG	2 cut(s)	564, 1403
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	8 cut(s)	470, 584, 733, 736, 1519, 1522, 1867, 1897
HaeIII	GGCC	3 cut(s)	39, 858, 1778
HapII	CCGG	2 cut(s)	1758, 1870
HgaI	GACGC	2 cut(s)	1061, 1902
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	7 cut(s)	219, 657, 890, 1008, 1046, 1183, 1553
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	1256
HindII	GTYRAC	1 cut(s)	1256
HindIII	AAGCTT	2 cut(s)	825, 835
HpaII	CCGG	2 cut(s)	1758, 1870
HphI	GGTGA	4 cut(s)	67, 91, 131, 423
Hpy166II	GTNNAC	3 cut(s)	602, 812, 1256
Hpy188I	TCNGA	2 cut(s)	592, 1663
Hpy188III	TCNNGA	4 cut(s)	278, 607, 1403, 1886
Hpy8I	GTNNAC	3 cut(s)	602, 812, 1256
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	4 cut(s)	127, 1483, 1579, 1684
HpyCH4III	ACNGT	5 cut(s)	403, 596, 691, 1546, 1849
HpyCH4IV	ACGT	1 cut(s)	1369
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1061, 1406, 1902
HpyF3I	CTNAG	1 cut(s)	1828
HpySE526I	ACGT	1 cut(s)	1369
Hsp92II	CATG	7 cut(s)	219, 657, 890, 1008, 1046, 1183, 1553
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	6 cut(s)	955, 1234, 1261, 1378, 1386, 1614
LmnI	GCTCC	3 cut(s)	243, 771, 825
Lsp1109I	GCAGC	6 cut(s)	595, 747, 1505, 1533, 1878, 1883
LweI	GCATC	5 cut(s)	640, 733, 972, 1065, 1585
MaeI	CTAG	2 cut(s)	564, 1403
MaeII	ACGT	1 cut(s)	1369
MaeIII	GTNAC	3 cut(s)	97, 779, 802
MalI	GATC	6 cut(s)	957, 1236, 1263, 1380, 1388, 1616
MboI	GATC	6 cut(s)	955, 1234, 1261, 1378, 1386, 1614
MboII	GAAGA	6 cut(s)	668, 893, 1434, 1642, 1697, 1778
MlsI	TGGCCA	2 cut(s)	858, 1778
MluNI	TGGCCA	2 cut(s)	858, 1778
MlyI	GAGTC	4 cut(s)	185, 275, 537, 1251
MmeI	TCCRAC	1 cut(s)	828
Mox20I	TGGCCA	2 cut(s)	858, 1778
Mph1103I	ATGCAT	1 cut(s)	655
MroXI	GAANNNNTTC	1 cut(s)	675
MscI	TGGCCA	2 cut(s)	858, 1778
MseI	TTAA	2 cut(s)	726, 975
MslI	CAYNNNNRTG	2 cut(s)	1218, 1350
Msp20I	TGGCCA	2 cut(s)	858, 1778
MspA1I	CMGCKG	1 cut(s)	1627
MspI	CCGG	2 cut(s)	1758, 1870
MspR9I	CCNGG	4 cut(s)	437, 697, 1515, 1758
Mva1269I	GAATGC	2 cut(s)	847, 1608
MvaI	CCWGG	3 cut(s)	437, 697, 1515
MvnI	CGCG	1 cut(s)	940
MwoI	GCNNNNNNNGC	3 cut(s)	1061, 1406, 1902
NciI	CCSGG	1 cut(s)	1758
NdeII	GATC	6 cut(s)	955, 1234, 1261, 1378, 1386, 1614
NlaIII	CATG	7 cut(s)	219, 657, 890, 1008, 1046, 1183, 1553
NmuCI	GTSAC	1 cut(s)	97
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	1252
PctI	GAATGC	2 cut(s)	847, 1608
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	6 cut(s)	428, 445, 1304, 1342, 1783, 1822
PkrI	GCNGC	8 cut(s)	471, 585, 734, 737, 1520, 1523, 1868, 1898
PleI	GAGTC	4 cut(s)	185, 275, 536, 1251
PpsI	GAGTC	4 cut(s)	185, 275, 536, 1251
PsiI	TTATAA	3 cut(s)	926, 1280, 1839
Psp6I	CCWGG	3 cut(s)	435, 695, 1513
PspGI	CCWGG	3 cut(s)	435, 695, 1513
PspPI	GGNCC	1 cut(s)	619
PstI	CTGCAG	1 cut(s)	1523
PvuII	CAGCTG	1 cut(s)	1627
RsaI	GTAC	4 cut(s)	67, 536, 626, 875
RsaNI	GTAC	4 cut(s)	66, 535, 625, 874
RseI	CAYNNNNRTG	2 cut(s)	1218, 1350
SalI	GTCGAC	1 cut(s)	1254
SaqAI	TTAA	2 cut(s)	726, 975
SatI	GCNGC	8 cut(s)	470, 584, 733, 736, 1519, 1522, 1867, 1897
Sau3AI	GATC	6 cut(s)	955, 1234, 1261, 1378, 1386, 1614
Sau96I	GGNCC	1 cut(s)	619
ScaI	AGTACT	1 cut(s)	536
SchI	GAGTC	4 cut(s)	185, 275, 537, 1251
ScrFI	CCNGG	4 cut(s)	437, 697, 1515, 1758
SfaNI	GCATC	5 cut(s)	640, 733, 972, 1065, 1585
SfcI	CTRYAG	2 cut(s)	1519, 1597
SinI	GGWCC	1 cut(s)	619
SmiMI	CAYNNNNRTG	2 cut(s)	1218, 1350
SmlI	CTYRAG	2 cut(s)	28, 1394
SmoI	CTYRAG	2 cut(s)	28, 1394
SsiI	CCGC	8 cut(s)	352, 469, 733, 769, 940, 985, 1373, 1864
SspI	AATATT	1 cut(s)	1435
SspMI	CTAG	2 cut(s)	564, 1403
StyD4I	CCNGG	4 cut(s)	435, 695, 1513, 1756
StyI	CCWWGG	2 cut(s)	1360, 1580
TaaI	ACNGT	5 cut(s)	403, 596, 691, 1546, 1849
TaiI	ACGT	1 cut(s)	1372
TaqI	TCGA	7 cut(s)	279, 629, 666, 1255, 1260, 1286, 1389
TatI	WGTACW	3 cut(s)	65, 534, 624
TauI	GCSGC	2 cut(s)	472, 735
TfiI	GAWTC	6 cut(s)	428, 445, 1304, 1342, 1783, 1822
Tru1I	TTAA	2 cut(s)	726, 975
Tru9I	TTAA	2 cut(s)	726, 975
TscAI	CASTG	3 cut(s)	406, 430, 694
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	6 cut(s)	583, 735, 1518, 1521, 1866, 1896
Tsp45I	GTSAC	1 cut(s)	97
TspRI	CASTG	3 cut(s)	406, 430, 694
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	3 cut(s)	369, 549, 672
XbaI	TCTAGA	1 cut(s)	1402
XceI	RCATGY	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	1255
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	2 cut(s)	564, 1403
ZrmI	AGTACT	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.