Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016162

Physical Location & Seq

Genomic Coordinates Reverse (-)

64230270 .. 64232672

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGACTGCAATCTCACACCTCCTGCGCTCAAACTGTGCCCATCTCAAAGACCACAGCATCTCTTGTACTCGTTTCACCTCCACCCTCTCCTCACTCTTCACCACTAACCCAAAACCCTTCAACTCTCCAAAACCCCATGACCACCAAAACCATACCATCATCCCCTATACTCAAACCCTCAAAGACTCCCTCCTCTCCCTCATCAAATCATGCACCCACAAGTCCCATTTGCTCCAAATCCACGCCCACATTCTCCAAACCTCTCTCGTTCTCGACTCCTCAATCTGCTTCCACTTCTTGTCCCTCGTTTCGCTTTCCCCACCTTTCCAAAACTTGACCTATTCCCGCCGATTCTTGTTTCAAATTCCCAAACCCAAAGCCATTCACTACAACACTGTGATAAGAGCTTACTCAATGAGTGATTCACCCCAGGAGGGGTTTCATCTTTACCTTGATTTGAGGCGGCGAGGTCTTGGTAGCAACGCTCTCTCGTCCTCTTTCGTAATGAAATGTTGTGTTAGAGACAGGTACTTATTAGGTGGAATTCAGGTTCAGGCTAGGATTGTGAGAGATGGGCAGCAATCAGACAGTCGTTTACTCACGACTTTGATGGACCTGTACTCGATTTGTGGCGAGTATGATGATGCATGTAAGGTGTTCGACGAAATTCTTCAGAGAGACACTGTTGCCTGGAATGTGTTGATTTCTTGTTTTCTGCATAACAGCCGCAGCAGGGATGCTTTGGGTTTGTTTGACATTATGCGGAGCGAAAGTTACAGATGTGAGCCTGATGATGTTACTTGTTTACTTATGCTCCAAGCTTGTGCAAACTTGAATGCGTTGGAGTTTGGCGAAAGGGTTCATAGGTACATTGAAGAACATGGTTATATTGGTGCTTCTAATCTGTGTAATGCTCTTATAACTATGTATTCGCGGTGTGGGTGTTTGGATCAGGCTTATGAGGTGTTTAAGGGGATGCGGGGTAGAAATGTGGTTTCATGGAGTGCAATGATTTCTGGGCTTGCTGTGAATGGGCATGACAGAGACGCTGTTGAAGCGTTTTGTGAGATGCGGAGAATGGGGGTTTTACCTGATGAACACACTTTTACTGGTGTTCTTTCGGCTTGCAGTCATTGTGGGTTGGTTGATGAAGCAATGGATATTTTTGATCGCATGAGCAAAGAGTTTGGAGTCGTGCCTAATGTCCATCACTATGGGTGCTTGGTTGATCTTTTGGGTCGGGCTGGTCGACTTGATCAAGCATATCAGCTTATAATGTCAATGGATATGAAACCAGATTCGAAGATATGGAGAACCTTACTTGGGGCTTGCAAGATTCATAACTATGAAACCCTTGGGGAACGTGTGGTGGATCATTTGATCGAACTCAAGGCTCTAGAGGCAGGGGACTATGTTCAGTTGATGAATATTTACTCTTCAGCTGAAAACTGGGAGAAGTTAGCTGAATTGAGGAAGTTTATGAAGGAAAAAGCAATTCAAACTACACCAGGCTGCAGCACAATTATACTGAACGGAACAGTCCATGAGTTTTTGGTGGATGATGTTTCGCATCCAAGGAAGGACGAAATCTACAGAATGCTGGATGAGATCAATAGTCAGCTGAAGATTGCTGGTTATGTTGCTGATGTATCATCAGAACTGCATAACTTGGGGACAGAAGAGAAGGGATATGCCCTCTCTTATCACAGCGAGAAATTAGCTATTGCTTTTGGACTGCTGGCAACTCCACCCGGCACAACAATTAGAGTGGCCAAGAATCTTCGCACTTGTGTTGATTGCCACAACTTTGCGAGGATTCTCTCCGGGGTTTATAACAGGACGATAATTGTTAGAGACCACAGCCGGTTTCATCATTTTCGGGAGGGAGGCTGCTCGTGCAATGGCTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_1 PPR_2

Protein Analysis

637

Amino Acids

72.05

Weight (kDa)

6.88

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	226 - 277	8.9e-09	PPR repeat family
PPR_long	PF17177	301 - 427	1.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	329 - 377	3.1e-11	PPR repeat family
PPR	PF01535	332 - 362	3.7e-06	PPR repeat
E_motif	PF20431	449 - 508	2.2e-12	E motif
DYW_deaminase	PF14432	545 - 637	4.9e-35	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47530
fragaria_vesca	FvH4_5g14900
malus_domestica	MD06G1193700.v1.1 MD14G1200800.v1.1
prunus_persica	Prupe.5G194000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181481
rosa_laevigata	RLG00000005190
rosa_multiflora	Rmu_co8291233.1_g000001 Rmu_sc0002060.1_g000023
rosa_roxburghii	Rroxscaffold_3G00271960
rosa_rugosa	Rorug06G0441700
rosa_samantha	Rh7AG043500 Rh7BG042900 Rh7CG044700
rosa_wichuraiana	Rw7G003620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	920, 1274, 1833
AccI	GTMKAC	1 cut(s)	1249
AccII	CGCG	1 cut(s)	934
AciI	CCGC	7 cut(s)	346, 463, 727, 763, 934, 979, 1072
AclWI	GGATC	2 cut(s)	957, 1380
AcoI	YGGCCR	1 cut(s)	1770
AcsI	RAATTY	3 cut(s)	363, 543, 666
AcuI	CTGAAG	3 cut(s)	656, 1422, 1643
AfaI	GTAC	4 cut(s)	67, 530, 620, 869
AfiI	CCNNNNNNNGG	4 cut(s)	434, 435, 733, 1323
AflIII	ACRYGT	1 cut(s)	1363
AgsI	TTSAA	6 cut(s)	121, 362, 835, 875, 1055, 1499
AjnI	CCWGG	3 cut(s)	429, 689, 1507
AloI	GAACNNNNNNTCC	2 cut(s)	534, 566
AluBI	AGCT	7 cut(s)	407, 821, 1270, 1442, 1463, 1621, 1721
AluI	AGCT	7 cut(s)	407, 821, 1270, 1442, 1463, 1621, 1721
Alw26I	GTCTC	4 cut(s)	516, 672, 1038, 1848
AlwI	GGATC	2 cut(s)	957, 1380
AoxI	GGCC	1 cut(s)	1770
ApeKI	GCWGC	5 cut(s)	577, 729, 1512, 1515, 1890
ApoI	RAATTY	3 cut(s)	363, 543, 666
Asp700I	GAANNNNTTC	2 cut(s)	669, 858
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	613
AsuC2I	CCSGG	2 cut(s)	1752, 1825
AsuHPI	GGTGA	3 cut(s)	67, 91, 417
AsuII	TTCGAA	1 cut(s)	1301
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	1772
BauI	CACGAG	1 cut(s)	1894
BbvI	GCAGC	5 cut(s)	589, 741, 1499, 1527, 1877
BccI	CCATC	5 cut(s)	48, 164, 566, 604, 1215
BciT130I	CCWGG	3 cut(s)	431, 691, 1509
BclI	TGATCA	1 cut(s)	1255
BcnI	CCSGG	2 cut(s)	1752, 1825
BcoDI	GTCTC	4 cut(s)	516, 672, 1038, 1848
BfaI	CTAG	2 cut(s)	558, 1397
BfmI	CTRYAG	2 cut(s)	1513, 1591
BisI	GCNGC	7 cut(s)	464, 578, 727, 730, 1513, 1516, 1891
BlsI	GCNGC	7 cut(s)	465, 579, 728, 731, 1514, 1517, 1892
Bme1390I	CCNGG	5 cut(s)	431, 691, 1509, 1752, 1825
Bme18I	GGWCC	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	613
BmrFI	CCNGG	5 cut(s)	431, 691, 1509, 1752, 1825
BmrI	ACTGGG	1 cut(s)	1459
BmsI	GCATC	6 cut(s)	66, 634, 727, 966, 1059, 1579
BmuI	ACTGGG	1 cut(s)	1459
Bpu14I	TTCGAA	1 cut(s)	1301
BpuEI	CTTGAG	1 cut(s)	1373
BpuMI	CCSGG	2 cut(s)	1752, 1825
BsaI	GGTCTC	1 cut(s)	1848
BsaJI	CCNNGG	4 cut(s)	429, 1354, 1574, 1824
BsaXI	ACNNNNNCTCC	4 cut(s)	757, 787, 798, 828
Bsc4I	CCNNNNNNNGG	4 cut(s)	434, 435, 733, 1323
Bse118I	RCCGGY	1 cut(s)	1863
Bse1I	ACTGG	2 cut(s)	1114, 1454
Bse3DI	GCAATG	3 cut(s)	1014, 1161, 1906
BseBI	CCWGG	3 cut(s)	431, 691, 1509
BseDI	CCNNGG	4 cut(s)	429, 1354, 1574, 1824
BseGI	GGATG	6 cut(s)	159, 742, 981, 1564, 1570, 1609
BseLI	CCNNNNNNNGG	4 cut(s)	434, 435, 733, 1323
BseMI	GCAATG	3 cut(s)	1014, 1161, 1906
BseNI	ACTGG	2 cut(s)	1114, 1454
BseRI	GAGGAG	3 cut(s)	79, 182, 268
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	5 cut(s)	589, 741, 1499, 1527, 1877
Bsh1236I	CGCG	1 cut(s)	934
BshFI	GGCC	1 cut(s)	1772
BsiSI	CCGG	3 cut(s)	1752, 1824, 1864
BslFI	GGGAC	4 cut(s)	208, 286, 1421, 1687
BslI	CCNNNNNNNGG	4 cut(s)	434, 435, 733, 1323
BsmAI	GTCTC	4 cut(s)	516, 672, 1038, 1848
BsmBI	CGTCTC	1 cut(s)	1038
BsmFI	GGGAC	4 cut(s)	208, 286, 1421, 1687
BsmI	GAATGC	2 cut(s)	841, 1602
BsnI	GGCC	1 cut(s)	1772
Bso31I	GGTCTC	1 cut(s)	1848
Bsp119I	TTCGAA	1 cut(s)	1301
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	7 cut(s)	949, 1168, 1228, 1255, 1372, 1380, 1608
BspACI	CCGC	7 cut(s)	346, 463, 727, 763, 934, 979, 1072
BspANI	GGCC	1 cut(s)	1772
BspFNI	CGCG	1 cut(s)	934
BspMAI	CTGCAG	1 cut(s)	1517
BspPI	GGATC	2 cut(s)	957, 1380
BspT104I	TTCGAA	1 cut(s)	1301
BspTNI	GGTCTC	1 cut(s)	1848
BsrDI	GCAATG	3 cut(s)	1014, 1161, 1906
BsrFI	RCCGGY	1 cut(s)	1863
BsrI	ACTGG	2 cut(s)	1114, 1454
BssAI	RCCGGY	1 cut(s)	1863
BssECI	CCNNGG	4 cut(s)	429, 1354, 1574, 1824
BssMI	GATC	7 cut(s)	949, 1168, 1228, 1255, 1372, 1380, 1608
BssSI	CACGAG	1 cut(s)	1894
BssT1I	CCWWGG	2 cut(s)	1354, 1574
Bst2BI	CACGAG	1 cut(s)	1894
Bst2UI	CCWGG	3 cut(s)	431, 691, 1509
Bst4CI	ACNGT	5 cut(s)	35, 397, 590, 685, 1540
Bst6I	CTCTTC	3 cut(s)	101, 1441, 1674
BstBI	TTCGAA	1 cut(s)	1301
BstC8I	GCNNGC	4 cut(s)	1023, 1126, 1330, 1740
BstF5I	GGATG	6 cut(s)	159, 742, 981, 1564, 1570, 1609
BstFNI	CGCG	1 cut(s)	934
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	7 cut(s)	952, 1171, 1231, 1258, 1375, 1383, 1611
BstMAI	GTCTC	4 cut(s)	516, 672, 1038, 1848
BstMBI	GATC	7 cut(s)	949, 1168, 1228, 1255, 1372, 1380, 1608
BstMWI	GCNNNNNNNGC	3 cut(s)	1055, 1400, 1896
BstNI	CCWGG	3 cut(s)	431, 691, 1509
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	5 cut(s)	429, 689, 1507, 1750, 1823
BstSFI	CTRYAG	2 cut(s)	1513, 1591
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	1 cut(s)	934
BstV1I	GCAGC	5 cut(s)	589, 741, 1499, 1527, 1877
BstXI	CCANNNNNNTGG	1 cut(s)	1214
BsuRI	GGCC	1 cut(s)	1772
BtsCI	GGATG	6 cut(s)	159, 742, 981, 1564, 1570, 1609
BtsIMutI	CAGTG	2 cut(s)	393, 681
Cac8I	GCNNGC	4 cut(s)	1023, 1126, 1330, 1740
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	1863
Cfr13I	GGNCC	1 cut(s)	613
CseI	GACGC	1 cut(s)	1055
Csp6I	GTAC	4 cut(s)	66, 529, 619, 868
CspCI	CAANNNNNGTGG	2 cut(s)	1749, 1784
CviAII	CATG	8 cut(s)	137, 210, 648, 881, 999, 1037, 1174, 1544
CviQI	GTAC	4 cut(s)	66, 529, 619, 868
DpnI	GATC	7 cut(s)	951, 1170, 1230, 1257, 1374, 1382, 1610
DpnII	GATC	7 cut(s)	949, 1168, 1228, 1255, 1372, 1380, 1608
EaeI	YGGCCR	1 cut(s)	1770
Eam1104I	CTCTTC	3 cut(s)	101, 1441, 1674
EarI	CTCTTC	3 cut(s)	101, 1441, 1674
Eco130I	CCWWGG	2 cut(s)	1354, 1574
Eco31I	GGTCTC	1 cut(s)	1848
Eco47I	GGWCC	1 cut(s)	613
Eco57I	CTGAAG	3 cut(s)	656, 1422, 1643
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	3 cut(s)	429, 689, 1507
EcoT14I	CCWWGG	2 cut(s)	1354, 1574
EcoT22I	ATGCAT	1 cut(s)	649
ErhI	CCWWGG	2 cut(s)	1354, 1574
Esp3I	CGTCTC	1 cut(s)	1038
FaeI	CATG	8 cut(s)	140, 213, 651, 884, 1002, 1040, 1177, 1547
FaqI	GGGAC	4 cut(s)	208, 286, 1421, 1687
FatI	CATG	8 cut(s)	136, 209, 647, 880, 998, 1036, 1173, 1543
FauI	CCCGC	2 cut(s)	353, 972
FbaI	TGATCA	1 cut(s)	1255
FblI	GTMKAC	1 cut(s)	1249
Fnu4HI	GCNGC	7 cut(s)	464, 578, 727, 730, 1513, 1516, 1891
FokI	GGATG	6 cut(s)	146, 749, 988, 1557, 1571, 1616
Fsp4HI	GCNGC	7 cut(s)	464, 578, 727, 730, 1513, 1516, 1891
FspBI	CTAG	2 cut(s)	558, 1397
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	7 cut(s)	464, 578, 727, 730, 1513, 1516, 1891
HaeIII	GGCC	1 cut(s)	1772
HapII	CCGG	3 cut(s)	1752, 1824, 1864
HgaI	GACGC	1 cut(s)	1055
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	8 cut(s)	140, 213, 651, 884, 1002, 1040, 1177, 1547
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	1250
HindII	GTYRAC	1 cut(s)	1250
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	9 cut(s)	185, 275, 351, 422, 1191, 1298, 1336, 1777, 1816
HpaII	CCGG	3 cut(s)	1752, 1824, 1864
HphI	GGTGA	3 cut(s)	67, 91, 417
Hpy166II	GTNNAC	3 cut(s)	596, 806, 1250
Hpy188I	TCNGA	3 cut(s)	586, 675, 1657
Hpy188III	TCNNGA	4 cut(s)	272, 601, 1397, 1880
Hpy8I	GTNNAC	3 cut(s)	596, 806, 1250
Hpy99I	CGWCG	1 cut(s)	665
HpyAV	CCTTC	4 cut(s)	127, 1477, 1573, 1678
HpyCH4III	ACNGT	5 cut(s)	35, 397, 590, 685, 1540
HpyCH4IV	ACGT	1 cut(s)	1363
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1055, 1400, 1896
HpySE526I	ACGT	1 cut(s)	1363
Hsp92II	CATG	8 cut(s)	140, 213, 651, 884, 1002, 1040, 1177, 1547
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	1255
Kzo9I	GATC	7 cut(s)	949, 1168, 1228, 1255, 1372, 1380, 1608
LmnI	GCTCC	3 cut(s)	237, 765, 819
Lsp1109I	GCAGC	5 cut(s)	589, 741, 1499, 1527, 1877
LweI	GCATC	6 cut(s)	66, 634, 727, 966, 1059, 1579
MaeI	CTAG	2 cut(s)	558, 1397
MaeII	ACGT	1 cut(s)	1363
MaeIII	GTNAC	2 cut(s)	773, 796
MalI	GATC	7 cut(s)	951, 1170, 1230, 1257, 1374, 1382, 1610
MboI	GATC	7 cut(s)	949, 1168, 1228, 1255, 1372, 1380, 1608
MboII	GAAGA	8 cut(s)	88, 662, 887, 1315, 1428, 1636, 1691, 1772
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	1772
MluCI	AATT	9 cut(s)	363, 543, 666, 1466, 1494, 1521, 1715, 1761, 1845
MluNI	TGGCCA	1 cut(s)	1772
MlyI	GAGTC	3 cut(s)	179, 269, 1200
MmeI	TCCRAC	1 cut(s)	822
Mox20I	TGGCCA	1 cut(s)	1772
Mph1103I	ATGCAT	1 cut(s)	649
MroXI	GAANNNNTTC	2 cut(s)	669, 858
MscI	TGGCCA	1 cut(s)	1772
MseI	TTAA	1 cut(s)	969
MslI	CAYNNNNRTG	2 cut(s)	1212, 1344
Msp20I	TGGCCA	1 cut(s)	1772
MspA1I	CMGCKG	2 cut(s)	1442, 1621
MspI	CCGG	3 cut(s)	1752, 1824, 1864
MspR9I	CCNGG	5 cut(s)	431, 691, 1509, 1752, 1825
Mva1269I	GAATGC	2 cut(s)	841, 1602
MvaI	CCWGG	3 cut(s)	431, 691, 1509
MvnI	CGCG	1 cut(s)	934
MwoI	GCNNNNNNNGC	3 cut(s)	1055, 1400, 1896
NciI	CCSGG	2 cut(s)	1752, 1825
NdeII	GATC	7 cut(s)	949, 1168, 1228, 1255, 1372, 1380, 1608
NlaIII	CATG	8 cut(s)	140, 213, 651, 884, 1002, 1040, 1177, 1547
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	651
NspV	TTCGAA	1 cut(s)	1301
PcsI	WCGNNNNNNNCGW	1 cut(s)	1246
PctI	GAATGC	2 cut(s)	841, 1602
PdmI	GAANNNNTTC	2 cut(s)	669, 858
PfeI	GAWTC	6 cut(s)	351, 422, 1298, 1336, 1777, 1816
PkrI	GCNGC	7 cut(s)	465, 579, 728, 731, 1514, 1517, 1892
PleI	GAGTC	3 cut(s)	179, 269, 1199
PpsI	GAGTC	3 cut(s)	179, 269, 1199
PsiI	TTATAA	3 cut(s)	920, 1274, 1833
Psp6I	CCWGG	3 cut(s)	429, 689, 1507
PspGI	CCWGG	3 cut(s)	429, 689, 1507
PspPI	GGNCC	1 cut(s)	613
PstI	CTGCAG	1 cut(s)	1517
PvuII	CAGCTG	2 cut(s)	1442, 1621
RsaI	GTAC	4 cut(s)	67, 530, 620, 869
RsaNI	GTAC	4 cut(s)	66, 529, 619, 868
RseI	CAYNNNNRTG	2 cut(s)	1212, 1344
SalI	GTCGAC	1 cut(s)	1248
SaqAI	TTAA	1 cut(s)	969
SatI	GCNGC	7 cut(s)	464, 578, 727, 730, 1513, 1516, 1891
Sau3AI	GATC	7 cut(s)	949, 1168, 1228, 1255, 1372, 1380, 1608
Sau96I	GGNCC	1 cut(s)	613
SchI	GAGTC	3 cut(s)	179, 269, 1200
ScrFI	CCNGG	5 cut(s)	431, 691, 1509, 1752, 1825
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	6 cut(s)	66, 634, 727, 966, 1059, 1579
SfcI	CTRYAG	2 cut(s)	1513, 1591
SfuI	TTCGAA	1 cut(s)	1301
SinI	GGWCC	1 cut(s)	613
SmiMI	CAYNNNNRTG	2 cut(s)	1212, 1344
SmlI	CTYRAG	1 cut(s)	1388
SmoI	CTYRAG	1 cut(s)	1388
Sse9I	AATT	9 cut(s)	363, 543, 666, 1466, 1494, 1521, 1715, 1761, 1845
SsiI	CCGC	7 cut(s)	346, 463, 727, 763, 934, 979, 1072
SspI	AATATT	1 cut(s)	1429
SspMI	CTAG	2 cut(s)	558, 1397
StyD4I	CCNGG	5 cut(s)	429, 689, 1507, 1750, 1823
StyI	CCWWGG	2 cut(s)	1354, 1574
TaaI	ACNGT	5 cut(s)	35, 397, 590, 685, 1540
TaiI	ACGT	1 cut(s)	1366
TaqI	TCGA	6 cut(s)	273, 623, 660, 1249, 1301, 1383
TasI	AATT	9 cut(s)	363, 543, 666, 1466, 1494, 1521, 1715, 1761, 1845
TatI	WGTACW	2 cut(s)	65, 618
TauI	GCSGC	2 cut(s)	466, 729
TfiI	GAWTC	6 cut(s)	351, 422, 1298, 1336, 1777, 1816
Tru1I	TTAA	1 cut(s)	969
Tru9I	TTAA	1 cut(s)	969
TscAI	CASTG	2 cut(s)	400, 688
TseI	GCWGC	5 cut(s)	577, 729, 1512, 1515, 1890
TspGWI	ACGGA	1 cut(s)	1548
TspRI	CASTG	2 cut(s)	400, 688
VpaK11BI	GGWCC	1 cut(s)	613
XapI	RAATTY	3 cut(s)	363, 543, 666
XbaI	TCTAGA	1 cut(s)	1396
XceI	RCATGY	1 cut(s)	651
XmiI	GTMKAC	1 cut(s)	1249
XmnI	GAANNNNTTC	2 cut(s)	669, 858
XspI	CTAG	2 cut(s)	558, 1397
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.