Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016162

Physical Location & Seq

Genomic Coordinates Forward (+)

2713849 .. 2717774

Gene Structure 3926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG042900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGACTGCAATCTCACACCCCCTGCGCTCAAACTGTGCCCATCTCAACATCTCTTGTACTCGTTTCACCTCCACCCTCTCCTCACTCTTCACCACTAACCCAAAACCCCATCACCACCAAAACCAGACCAAACCCATCATCATCCCCTATACTCAAACCCTCAAAGACTCCCTCCTCTCCCTCATCAAATCATGCACCCACAAATCCCATTTGCTCCAAATCCACGCCCACATTCTCCAAACCTCTCTCATCCTCGACTCCTCAATCTGCTTCCACTTCTTGTCCCTCGTTTCGCTTTCCCCACCTTTCCAAAACTTGACCTATTCCCGCCGATTCTTGTTTCAGATTCCCAAACCCAAAGCCATTCACTACAACACTGTGATAAGAGCTTACTCTATGAGTGATTCACCCCAGGAGGGGATTCATCTTTACCTTGATTTGAGGCGGCGAGGTCTCCGTAGCAACGCTCTCTCCTCCTCTTTCGTAATCAAGTGTTGTGTTAGAGTCAAGTACTTATTGGGTGGAATTCAGGTTCAGGCTAGGATTGTGAGAGATGGGCAGCAATCAGACAGTCGTTTACTCACGACTTTGATGGACCTGTACTCGATTTGCGGCGAGTATGATGATGCATGTAAGGTGTTCGACGAAATTCTTCACAGAGACACTGTTGCCTGGAATGTGTTGATTTCTTGTTTTCTGCATAACTGCCGCAGCAGGGATGCTTTGGGTTTGTTTGACATTATGCGGAGCGAAAGTTACGGATGTGAGCCTGATGATGTTACTTGTTTACTTATGCTCCAAGCTTGCGCAAACTTGAATGCGTTGGAGTTTGGCGAAAGGGTTCATAGGTACATTGAAGAACATGGTTATATCGGTGCTTCTAATCTCTGTAATGCTCTTATAACTATGTATTCGCGGTGTGGGTGTTTGGATCAGGCTTATGAGGTGTTTAAGGGGATGCGGGGTAGAAATGTGGTTTCATGGAGTGCAATCATTTCTGGGCTTGCTGTGAATGGGCATGACAGAGACGCTGTTGAAGCGTTTTGTGAGATGCAGAGAATGGGGGTTTTACCTGATGAGCAGACTTTTACTGGTGTTCTTTCGGCTTGCAGTCATTGTGGGTTGGTTGATGAAGCAATGGATATTTTTGATCGCATGAGCAAAGAGTTTGGAGTAGTGCCTAATGTCCATCACTATGGGTGCTTGGTTGATCTTTTGGGTCGGGCTGGTCGACTTGATCAAGCATATCAGCTTATAATGTCGATGGATATGAAACCAGATTCGAAGATATGGAGAACCTTACTTGGGGCTTGCAAGATTCATAACTATGAAACCCTTGGGGAACGTGTGGTGGATCATTTGATCGAACTCAAGGCTCTAGAGGCAGGGGACTATGTTCTGTTGATGAATATTTACTCTTCAGCTGAAAACTGGGAGAAATTAGCTGAATTGAGGAAGTTTATGAAGGAAAAAGCAATTCAAACTACACCAGGCTGCAGCACAATTATACTGAATGGAACAGTCCATGAGTTTTTGGTGGATGATGTTTCGCATCCAAGGAAGGACGAAATCTACAGAATGCTGGATGAGATCAATAGTCAGCTGAAGATTGCTGGTTATGTTGCTGATGTATCATCAGAACTGCACAAGTTGGGGACAGAAGAGAAGGGATATGCACTCTCTTATCACAGCGAGAAATTAGCTATTGCTTTTGGAGTGCTGGCAACTCCACCCGGCACGACAATTAGAGTGGCCAAGAATCTTCGCACTTGTGTTGATTGCCACAACTTTGCGAGGATTCTCTCAGGGGTTTATAACAGGACGGTAATTGTTAGAGACCGCAGTTGGTTTCATCATTTTCGGGAGGGACGCTGCTCGTGCAATGGCTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_1 PPR_2

Protein Analysis

631

Amino Acids

71.37

Weight (kDa)

7.32

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	220 - 271	1.3e-09	PPR repeat family
PPR_long	PF17177	294 - 420	1.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	323 - 371	1.2e-10	PPR repeat family
E_motif	PF20431	443 - 502	7.3e-14	E motif
DYW_deaminase	PF14432	539 - 631	4.1e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0016162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47530
fragaria_vesca	FvH4_5g14900
malus_domestica	MD06G1193700.v1.1 MD14G1200800.v1.1
prunus_persica	Prupe.5G194000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181481
rosa_laevigata	RLG00000005190
rosa_multiflora	Rmu_co8291233.1_g000001 Rmu_sc0002060.1_g000023
rosa_roxburghii	Rroxscaffold_3G00271960
rosa_rugosa	Rorug06G0441700
rosa_samantha	Rh7AG043500 Rh7BG042900 Rh7CG044700
rosa_wichuraiana	Rw7G003620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	902, 1256, 1815
Acc16I	TGCGCA	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	1231
AccII	CGCG	1 cut(s)	916
AciI	CCGC	8 cut(s)	328, 445, 612, 709, 745, 916, 961, 1840
AclWI	GGATC	2 cut(s)	939, 1362
AcoI	YGGCCR	1 cut(s)	1752
AcsI	RAATTY	2 cut(s)	525, 648
AcuI	CTGAAG	2 cut(s)	1404, 1625
AfaI	GTAC	4 cut(s)	58, 512, 602, 851
AfiI	CCNNNNNNNGG	4 cut(s)	416, 417, 715, 1305
AflIII	ACRYGT	1 cut(s)	1345
AgsI	TTSAA	4 cut(s)	817, 857, 1037, 1481
AjnI	CCWGG	3 cut(s)	411, 671, 1489
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	7 cut(s)	389, 803, 1252, 1424, 1445, 1603, 1703
AluI	AGCT	7 cut(s)	389, 803, 1252, 1424, 1445, 1603, 1703
Alw26I	GTCTC	4 cut(s)	458, 654, 1020, 1830
AlwI	GGATC	2 cut(s)	939, 1362
AoxI	GGCC	1 cut(s)	1752
ApeKI	GCWGC	5 cut(s)	559, 711, 1494, 1497, 1872
ApoI	RAATTY	2 cut(s)	525, 648
Asp700I	GAANNNNTTC	2 cut(s)	651, 840
AspLEI	GCGC	2 cut(s)	27, 809
AspS9I	GGNCC	1 cut(s)	595
AsuC2I	CCSGG	1 cut(s)	1734
AsuHPI	GGTGA	4 cut(s)	58, 82, 104, 399
AsuII	TTCGAA	1 cut(s)	1283
AvaII	GGWCC	1 cut(s)	595
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	1754
BauI	CACGAG	1 cut(s)	1876
BbvI	GCAGC	5 cut(s)	571, 723, 1481, 1509, 1859
BccI	CCATC	7 cut(s)	48, 117, 143, 548, 586, 1197, 1258
BciT130I	CCWGG	3 cut(s)	413, 673, 1491
BclI	TGATCA	1 cut(s)	1237
BcnI	CCSGG	1 cut(s)	1734
BcoDI	GTCTC	4 cut(s)	458, 654, 1020, 1830
BfaI	CTAG	2 cut(s)	540, 1379
BfmI	CTRYAG	2 cut(s)	1495, 1573
BisI	GCNGC	8 cut(s)	446, 560, 613, 709, 712, 1495, 1498, 1873
BlsI	GCNGC	8 cut(s)	447, 561, 614, 710, 713, 1496, 1499, 1874
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	4 cut(s)	413, 673, 1491, 1734
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	595
BmrFI	CCNGG	4 cut(s)	413, 673, 1491, 1734
BmrI	ACTGGG	1 cut(s)	1441
BmsI	GCATC	5 cut(s)	616, 709, 948, 1041, 1561
BmuI	ACTGGG	1 cut(s)	1441
Bpu14I	TTCGAA	1 cut(s)	1283
BpuEI	CTTGAG	1 cut(s)	1355
BpuMI	CCSGG	1 cut(s)	1734
BsaI	GGTCTC	2 cut(s)	458, 1830
BsaJI	CCNNGG	3 cut(s)	411, 1336, 1556
BsaXI	ACNNNNNCTCC	6 cut(s)	455, 485, 739, 769, 780, 810
Bsc4I	CCNNNNNNNGG	4 cut(s)	416, 417, 715, 1305
Bse1I	ACTGG	2 cut(s)	1096, 1436
Bse3DI	GCAATG	2 cut(s)	1143, 1888
BseBI	CCWGG	3 cut(s)	413, 673, 1491
BseDI	CCNNGG	3 cut(s)	411, 1336, 1556
BseGI	GGATG	8 cut(s)	141, 249, 724, 767, 963, 1546, 1552, 1591
BseLI	CCNNNNNNNGG	4 cut(s)	416, 417, 715, 1305
BseMI	GCAATG	2 cut(s)	1143, 1888
BseMII	CTCAG	1 cut(s)	1818
BseNI	ACTGG	2 cut(s)	1096, 1436
BseRI	GAGGAG	5 cut(s)	70, 164, 250, 463, 466
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	5 cut(s)	571, 723, 1481, 1509, 1859
BsgI	GTGCAG	1 cut(s)	1628
Bsh1236I	CGCG	1 cut(s)	916
BshFI	GGCC	1 cut(s)	1754
BsiSI	CCGG	1 cut(s)	1734
BslFI	GGGAC	4 cut(s)	268, 1403, 1669, 1881
BslI	CCNNNNNNNGG	4 cut(s)	416, 417, 715, 1305
BsmAI	GTCTC	4 cut(s)	458, 654, 1020, 1830
BsmBI	CGTCTC	1 cut(s)	1020
BsmFI	GGGAC	4 cut(s)	268, 1403, 1669, 1881
BsmI	GAATGC	2 cut(s)	823, 1584
BsnI	GGCC	1 cut(s)	1754
Bso31I	GGTCTC	2 cut(s)	458, 1830
Bsp119I	TTCGAA	1 cut(s)	1283
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	7 cut(s)	931, 1150, 1210, 1237, 1354, 1362, 1590
BspACI	CCGC	8 cut(s)	328, 445, 612, 709, 745, 916, 961, 1840
BspANI	GGCC	1 cut(s)	1754
BspCNI	CTCAG	1 cut(s)	1817
BspFNI	CGCG	1 cut(s)	916
BspMAI	CTGCAG	1 cut(s)	1499
BspPI	GGATC	2 cut(s)	939, 1362
BspT104I	TTCGAA	1 cut(s)	1283
BspTNI	GGTCTC	2 cut(s)	458, 1830
BsrDI	GCAATG	2 cut(s)	1143, 1888
BsrI	ACTGG	2 cut(s)	1096, 1436
BssECI	CCNNGG	3 cut(s)	411, 1336, 1556
BssMI	GATC	7 cut(s)	931, 1150, 1210, 1237, 1354, 1362, 1590
BssSI	CACGAG	1 cut(s)	1876
BssT1I	CCWWGG	2 cut(s)	1336, 1556
Bst2BI	CACGAG	1 cut(s)	1876
Bst2UI	CCWGG	3 cut(s)	413, 673, 1491
Bst4CI	ACNGT	6 cut(s)	35, 379, 572, 667, 1522, 1825
Bst6I	CTCTTC	3 cut(s)	92, 1423, 1656
BstBI	TTCGAA	1 cut(s)	1283
BstC8I	GCNNGC	5 cut(s)	805, 1005, 1108, 1312, 1722
BstDEI	CTNAG	1 cut(s)	1804
BstF5I	GGATG	8 cut(s)	141, 249, 724, 767, 963, 1546, 1552, 1591
BstFNI	CGCG	1 cut(s)	916
BstHHI	GCGC	2 cut(s)	27, 809
BstKTI	GATC	7 cut(s)	934, 1153, 1213, 1240, 1357, 1365, 1593
BstMAI	GTCTC	4 cut(s)	458, 654, 1020, 1830
BstMBI	GATC	7 cut(s)	931, 1150, 1210, 1237, 1354, 1362, 1590
BstMWI	GCNNNNNNNGC	3 cut(s)	1037, 1382, 1878
BstNI	CCWGG	3 cut(s)	413, 673, 1491
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	4 cut(s)	411, 671, 1489, 1732
BstSFI	CTRYAG	2 cut(s)	1495, 1573
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	1 cut(s)	916
BstV1I	GCAGC	5 cut(s)	571, 723, 1481, 1509, 1859
BstXI	CCANNNNNNTGG	1 cut(s)	1196
BsuRI	GGCC	1 cut(s)	1754
BtsCI	GGATG	8 cut(s)	141, 249, 724, 767, 963, 1546, 1552, 1591
BtsIMutI	CAGTG	2 cut(s)	375, 663
Cac8I	GCNNGC	5 cut(s)	805, 1005, 1108, 1312, 1722
CfoI	GCGC	2 cut(s)	27, 809
Cfr13I	GGNCC	1 cut(s)	595
CseI	GACGC	2 cut(s)	1037, 1878
Csp6I	GTAC	4 cut(s)	57, 511, 601, 850
CspCI	CAANNNNNGTGG	2 cut(s)	1731, 1766
CviAII	CATG	7 cut(s)	192, 630, 863, 981, 1019, 1156, 1526
CviQI	GTAC	4 cut(s)	57, 511, 601, 850
DdeI	CTNAG	1 cut(s)	1804
DpnI	GATC	7 cut(s)	933, 1152, 1212, 1239, 1356, 1364, 1592
DpnII	GATC	7 cut(s)	931, 1150, 1210, 1237, 1354, 1362, 1590
EaeI	YGGCCR	1 cut(s)	1752
Eam1104I	CTCTTC	3 cut(s)	92, 1423, 1656
EarI	CTCTTC	3 cut(s)	92, 1423, 1656
Eco130I	CCWWGG	2 cut(s)	1336, 1556
Eco31I	GGTCTC	2 cut(s)	458, 1830
Eco47I	GGWCC	1 cut(s)	595
Eco57I	CTGAAG	2 cut(s)	1404, 1625
EcoRI	GAATTC	1 cut(s)	525
EcoRII	CCWGG	3 cut(s)	411, 671, 1489
EcoT14I	CCWWGG	2 cut(s)	1336, 1556
EcoT22I	ATGCAT	1 cut(s)	631
ErhI	CCWWGG	2 cut(s)	1336, 1556
Esp3I	CGTCTC	1 cut(s)	1020
FaeI	CATG	7 cut(s)	195, 633, 866, 984, 1022, 1159, 1529
FaqI	GGGAC	4 cut(s)	268, 1403, 1669, 1881
FatI	CATG	7 cut(s)	191, 629, 862, 980, 1018, 1155, 1525
FauI	CCCGC	2 cut(s)	335, 954
FbaI	TGATCA	1 cut(s)	1237
FblI	GTMKAC	1 cut(s)	1231
Fnu4HI	GCNGC	8 cut(s)	446, 560, 613, 709, 712, 1495, 1498, 1873
FokI	GGATG	8 cut(s)	128, 236, 731, 774, 970, 1539, 1553, 1598
Fsp4HI	GCNGC	8 cut(s)	446, 560, 613, 709, 712, 1495, 1498, 1873
FspBI	CTAG	2 cut(s)	540, 1379
FspI	TGCGCA	1 cut(s)	808
GlaI	GCGC	2 cut(s)	26, 808
GluI	GCNGC	8 cut(s)	446, 560, 613, 709, 712, 1495, 1498, 1873
HaeIII	GGCC	1 cut(s)	1754
HapII	CCGG	1 cut(s)	1734
HgaI	GACGC	2 cut(s)	1037, 1878
HhaI	GCGC	2 cut(s)	27, 809
Hin1II	CATG	7 cut(s)	195, 633, 866, 984, 1022, 1159, 1529
Hin6I	GCGC	2 cut(s)	25, 807
HinP1I	GCGC	2 cut(s)	25, 807
HincII	GTYRAC	1 cut(s)	1232
HindII	GTYRAC	1 cut(s)	1232
HindIII	AAGCTT	1 cut(s)	801
HpaII	CCGG	1 cut(s)	1734
HphI	GGTGA	4 cut(s)	58, 82, 104, 399
Hpy166II	GTNNAC	3 cut(s)	578, 788, 1232
Hpy188I	TCNGA	3 cut(s)	345, 568, 1639
Hpy188III	TCNNGA	3 cut(s)	583, 1379, 1862
Hpy8I	GTNNAC	3 cut(s)	578, 788, 1232
Hpy99I	CGWCG	1 cut(s)	647
HpyAV	CCTTC	3 cut(s)	1459, 1555, 1660
HpyCH4III	ACNGT	6 cut(s)	35, 379, 572, 667, 1522, 1825
HpyCH4IV	ACGT	1 cut(s)	1345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1037, 1382, 1878
HpyF3I	CTNAG	1 cut(s)	1804
HpySE526I	ACGT	1 cut(s)	1345
Hsp92II	CATG	7 cut(s)	195, 633, 866, 984, 1022, 1159, 1529
HspAI	GCGC	2 cut(s)	25, 807
Ksp22I	TGATCA	1 cut(s)	1237
Kzo9I	GATC	7 cut(s)	931, 1150, 1210, 1237, 1354, 1362, 1590
LmnI	GCTCC	3 cut(s)	219, 747, 801
Lsp1109I	GCAGC	5 cut(s)	571, 723, 1481, 1509, 1859
LweI	GCATC	5 cut(s)	616, 709, 948, 1041, 1561
MaeI	CTAG	2 cut(s)	540, 1379
MaeII	ACGT	1 cut(s)	1345
MaeIII	GTNAC	2 cut(s)	755, 778
MalI	GATC	7 cut(s)	933, 1152, 1212, 1239, 1356, 1364, 1592
MboI	GATC	7 cut(s)	931, 1150, 1210, 1237, 1354, 1362, 1590
MboII	GAAGA	8 cut(s)	79, 644, 869, 1297, 1410, 1618, 1673, 1754
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	1754
MluCI	AATT	9 cut(s)	525, 648, 1439, 1448, 1476, 1503, 1697, 1743, 1827
MluNI	TGGCCA	1 cut(s)	1754
MlyI	GAGTC	3 cut(s)	161, 251, 513
MmeI	TCCRAC	1 cut(s)	804
Mox20I	TGGCCA	1 cut(s)	1754
Mph1103I	ATGCAT	1 cut(s)	631
MroXI	GAANNNNTTC	2 cut(s)	651, 840
MscI	TGGCCA	1 cut(s)	1754
MseI	TTAA	1 cut(s)	951
MslI	CAYNNNNRTG	2 cut(s)	1194, 1326
Msp20I	TGGCCA	1 cut(s)	1754
MspA1I	CMGCKG	2 cut(s)	1424, 1603
MspI	CCGG	1 cut(s)	1734
MspR9I	CCNGG	4 cut(s)	413, 673, 1491, 1734
Mva1269I	GAATGC	2 cut(s)	823, 1584
MvaI	CCWGG	3 cut(s)	413, 673, 1491
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	3 cut(s)	1037, 1382, 1878
NciI	CCSGG	1 cut(s)	1734
NdeII	GATC	7 cut(s)	931, 1150, 1210, 1237, 1354, 1362, 1590
NlaIII	CATG	7 cut(s)	195, 633, 866, 984, 1022, 1159, 1529
NsbI	TGCGCA	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	631
NspI	RCATGY	1 cut(s)	633
NspV	TTCGAA	1 cut(s)	1283
PcsI	WCGNNNNNNNCGW	1 cut(s)	1228
PctI	GAATGC	2 cut(s)	823, 1584
PdmI	GAANNNNTTC	2 cut(s)	651, 840
PfeI	GAWTC	8 cut(s)	333, 346, 404, 421, 1280, 1318, 1759, 1798
PkrI	GCNGC	8 cut(s)	447, 561, 614, 710, 713, 1496, 1499, 1874
PleI	GAGTC	3 cut(s)	161, 251, 512
PpsI	GAGTC	3 cut(s)	161, 251, 512
PsiI	TTATAA	3 cut(s)	902, 1256, 1815
Psp6I	CCWGG	3 cut(s)	411, 671, 1489
PspGI	CCWGG	3 cut(s)	411, 671, 1489
PspPI	GGNCC	1 cut(s)	595
PstI	CTGCAG	1 cut(s)	1499
PvuII	CAGCTG	2 cut(s)	1424, 1603
RsaI	GTAC	4 cut(s)	58, 512, 602, 851
RsaNI	GTAC	4 cut(s)	57, 511, 601, 850
RseI	CAYNNNNRTG	2 cut(s)	1194, 1326
SalI	GTCGAC	1 cut(s)	1230
SaqAI	TTAA	1 cut(s)	951
SatI	GCNGC	8 cut(s)	446, 560, 613, 709, 712, 1495, 1498, 1873
Sau3AI	GATC	7 cut(s)	931, 1150, 1210, 1237, 1354, 1362, 1590
Sau96I	GGNCC	1 cut(s)	595
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	3 cut(s)	161, 251, 513
ScrFI	CCNGG	4 cut(s)	413, 673, 1491, 1734
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	5 cut(s)	616, 709, 948, 1041, 1561
SfcI	CTRYAG	2 cut(s)	1495, 1573
SfuI	TTCGAA	1 cut(s)	1283
SinI	GGWCC	1 cut(s)	595
SmiMI	CAYNNNNRTG	2 cut(s)	1194, 1326
SmlI	CTYRAG	1 cut(s)	1370
SmoI	CTYRAG	1 cut(s)	1370
Sse9I	AATT	9 cut(s)	525, 648, 1439, 1448, 1476, 1503, 1697, 1743, 1827
SsiI	CCGC	8 cut(s)	328, 445, 612, 709, 745, 916, 961, 1840
SspI	AATATT	1 cut(s)	1411
SspMI	CTAG	2 cut(s)	540, 1379
StyD4I	CCNGG	4 cut(s)	411, 671, 1489, 1732
StyI	CCWWGG	2 cut(s)	1336, 1556
TaaI	ACNGT	6 cut(s)	35, 379, 572, 667, 1522, 1825
TaiI	ACGT	1 cut(s)	1348
TaqI	TCGA	7 cut(s)	255, 605, 642, 1231, 1262, 1283, 1365
TasI	AATT	9 cut(s)	525, 648, 1439, 1448, 1476, 1503, 1697, 1743, 1827
TatI	WGTACW	3 cut(s)	56, 510, 600
TauI	GCSGC	3 cut(s)	448, 615, 711
TfiI	GAWTC	8 cut(s)	333, 346, 404, 421, 1280, 1318, 1759, 1798
Tru1I	TTAA	1 cut(s)	951
Tru9I	TTAA	1 cut(s)	951
TscAI	CASTG	2 cut(s)	382, 670
TseI	GCWGC	5 cut(s)	559, 711, 1494, 1497, 1872
TspGWI	ACGGA	2 cut(s)	446, 774
TspRI	CASTG	2 cut(s)	382, 670
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	2 cut(s)	525, 648
XbaI	TCTAGA	1 cut(s)	1378
XceI	RCATGY	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	1231
XmnI	GAANNNNTTC	2 cut(s)	651, 840
XspI	CTAG	2 cut(s)	540, 1379
ZrmI	AGTACT	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.