Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293079.1

Orthogroup ID

OG0005458

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 875

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293079.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 875 bp

ttcccgtctgtttatagtgagatagagaagagattaaatgatctggaattcaaacagtctggaaaggatcttagagctcttaaacagatattggaagcaatgcaagtaaaagggctgttagaaaccaaaaaagaagagcaagcttcaaattttgaaactcaaaaggactgtgaaccagaatgttctagttccaatccagacccaaggtctgtgaatcaaagaaacagaaacagccatgctatgtcttccagaattaaaagctctgattcctcgaagaattatggttccccgattgtgatcattaaacctgcaaaggttgtcgaaaagtctggtcttcctagttcatcactaatttcaatggatggcctgtctgatgtccatactgctcctagagggggaacagtagataacaagagggtttcaactaacagccgaacagctaaagatcattctcctaagaacagtaggaaagactcttctgttggctccattgacaaaaagccaagtggcaggaatgtaaaatctcttccaaaggaaaacagtgcaacaaattcagcaaagagctcaggatctgtgagcccaagactacagcagaagaagcttgagttggggaagccatctcgtccacctaccccgccatctgatacaagaaaaccgagaaggcaatccagcaggcaatcaacagacgcaacttcacctggtagaaaactcagaccaaaatcttccaacttgcagcaaagtgatgaccagttgagtgagataagtaatgaatctagacggtcgagtttccaaggagatgacatagatatggaagagtctagcagtgtacgaggtactgatacaaatgattgccagagtccatctctgaaggcttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

292

Amino Acids

31.93

Weight (kDa)

9.7

Isoelectric Point (pI)

68.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18620 AT1G18620 AT1G18620 AT1G18620 AT1G18620 AT1G74160 AT1G74160 AT1G74160
fragaria_vesca	FvH4_5g13690 FvH4_5g13690 FvH4_5g13690
malus_domestica	MD06G1203000.v1.1 MD14G1213600.v1.1
prunus_persica	Prupe.5G206500_v2.0.a1
pyrus_communis	pycom06g18080 pycom14g17690
rosa_chinensis	RchiOBHm_Chr7g0183251
rosa_laevigata	RLG00000005062
rosa_multiflora	Rmu_co8293079.1_g000001 Rmu_co8448119.1_g000001 Rmu_sc0008744.1_g000012
rosa_roxburghii	Rroxscaffold_3G00270620
rosa_rugosa	Rorug06G0455500 Rorug06G0455600
rosa_samantha	Rh7AG057500 Rh7BG057400 Rh7CG059000 Rh7DG057200
rosa_wichuraiana	Rw7G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AciI	CCGC	1 cut(s)	635
AclWI	GGATC	2 cut(s)	75, 577
AcsI	RAATTY	3 cut(s)	47, 148, 550
AfaI	GTAC	2 cut(s)	828, 835
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	52, 147, 155, 357, 423
AhdI	GACNNNNNGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	697
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AluBI	AGCT	6 cut(s)	77, 143, 261, 440, 564, 601
AluI	AGCT	6 cut(s)	77, 143, 261, 440, 564, 601
Alw21I	GWGCWC	2 cut(s)	79, 566
AlwI	GGATC	2 cut(s)	75, 577
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	733
ApoI	RAATTY	3 cut(s)	47, 148, 550
AsuHPI	GGTGA	1 cut(s)	687
BanII	GRGCYC	3 cut(s)	79, 566, 581
BarI	GAAGNNNNNNTAC	2 cut(s)	510, 542
BbsI	GAAGAC	2 cut(s)	237, 326
Bbv12I	GWGCWC	2 cut(s)	79, 566
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	4 cut(s)	356, 625, 646, 868
BciT130I	CCWGG	1 cut(s)	699
BclI	TGATCA	1 cut(s)	297
BfaI	CTAG	5 cut(s)	186, 339, 390, 774, 819
BfmI	CTRYAG	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	1 cut(s)	734
BlsI	GCNGC	1 cut(s)	735
Bme1390I	CCNGG	1 cut(s)	699
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	286, 487
BmrFI	CCNGG	1 cut(s)	699
BpiI	GAAGAC	2 cut(s)	237, 326
BplI	GAGNNNNNCTC	1 cut(s)	847
Bpu10I	CCTNAGC	1 cut(s)	565
BpuEI	CTTGAG	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	203, 790
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	203, 790
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	579, 724
BseNI	ACTGG	1 cut(s)	748
BseXI	GCAGC	1 cut(s)	745
Bsh1285I	CGRYCG	1 cut(s)	782
BshFI	GGCC	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	79, 566
BslI	CCNNNNNNNGG	1 cut(s)	395
BsnI	GGCC	1 cut(s)	366
Bsp1286I	GDGCHC	3 cut(s)	79, 566, 581
Bsp143I	GATC	5 cut(s)	40, 67, 297, 445, 569
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	578, 723
BspLI	GGNNCC	2 cut(s)	286, 487
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	75, 577
BspQI	GCTCTTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	2 cut(s)	203, 790
BssMI	GATC	5 cut(s)	40, 67, 297, 445, 569
BssT1I	CCWWGG	2 cut(s)	203, 790
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	6 cut(s)	57, 170, 403, 464, 542, 780
Bst6I	CTCTTC	5 cut(s)	23, 129, 481, 531, 807
BstC8I	GCNNGC	2 cut(s)	141, 674
BstDEI	CTNAG	4 cut(s)	71, 456, 565, 710
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	5 cut(s)	43, 70, 300, 448, 572
BstMBI	GATC	5 cut(s)	40, 67, 297, 445, 569
BstMCI	CGRYCG	1 cut(s)	782
BstMWI	GCNNNNNNNGC	1 cut(s)	598
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	745
BstV2I	GAAGAC	2 cut(s)	237, 326
BstX2I	RGATCY	2 cut(s)	67, 569
BstYI	RGATCY	2 cut(s)	67, 569
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	2 cut(s)	547, 829
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	141, 674
CaiI	CAGNNNCTG	1 cut(s)	572
CseI	GACGC	1 cut(s)	695
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	827, 834
CviAII	CATG	1 cut(s)	236
CviQI	GTAC	2 cut(s)	827, 834
DdeI	CTNAG	4 cut(s)	71, 456, 565, 710
DpnI	GATC	5 cut(s)	42, 69, 299, 447, 571
DpnII	GATC	5 cut(s)	40, 67, 297, 445, 569
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	5 cut(s)	23, 129, 481, 531, 807
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	5 cut(s)	23, 129, 481, 531, 807
Ecl136II	GAGCTC	2 cut(s)	77, 564
Eco130I	CCWWGG	2 cut(s)	203, 790
Eco24I	GRGCYC	3 cut(s)	79, 566, 581
Eco53kI	GAGCTC	2 cut(s)	77, 564
EcoICRI	GAGCTC	2 cut(s)	77, 564
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	2 cut(s)	203, 790
EcoT38I	GRGCYC	3 cut(s)	79, 566, 581
ErhI	CCWWGG	2 cut(s)	203, 790
FaeI	CATG	1 cut(s)	239
FaiI	YATR	7 cut(s)	15, 237, 242, 282, 381, 803, 809
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	642
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	734
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	3 cut(s)	79, 566, 581
Fsp4HI	GCNGC	1 cut(s)	734
FspBI	CTAG	5 cut(s)	186, 339, 390, 774, 819
GluI	GCNGC	1 cut(s)	734
HaeIII	GGCC	1 cut(s)	366
HgaI	GACGC	1 cut(s)	695
Hin1II	CATG	1 cut(s)	239
HindIII	AAGCTT	2 cut(s)	141, 599
HinfI	GANTC	6 cut(s)	214, 266, 473, 770, 815, 856
HphI	GGTGA	1 cut(s)	687
Hpy166II	GTNNAC	3 cut(s)	173, 626, 827
Hpy188I	TCNGA	5 cut(s)	265, 373, 643, 713, 867
Hpy188III	TCNNGA	6 cut(s)	44, 60, 197, 249, 567, 774
Hpy8I	GTNNAC	3 cut(s)	173, 626, 827
HpyAV	CCTTC	2 cut(s)	654, 862
HpyCH4III	ACNGT	6 cut(s)	57, 170, 403, 464, 542, 780
HpyCH4V	TGCA	4 cut(s)	103, 311, 545, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	598
HpyF3I	CTNAG	4 cut(s)	71, 456, 565, 710
Hsp92II	CATG	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	5 cut(s)	40, 67, 297, 445, 569
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	391, 491
Lsp1109I	GCAGC	1 cut(s)	745
MabI	ACCWGGT	1 cut(s)	697
MaeI	CTAG	5 cut(s)	186, 339, 390, 774, 819
MalI	GATC	5 cut(s)	42, 69, 299, 447, 571
MboI	GATC	5 cut(s)	40, 67, 297, 445, 569
MflI	RGATCY	2 cut(s)	67, 569
MhlI	GDGCHC	3 cut(s)	79, 566, 581
MluCI	AATT	6 cut(s)	47, 148, 252, 277, 351, 550
MlyI	GAGTC	3 cut(s)	467, 824, 865
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	4 cut(s)	280, 386, 408, 824
MseI	TTAA	4 cut(s)	35, 81, 255, 303
MslI	CAYNNNNRTG	1 cut(s)	806
MspR9I	CCNGG	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	1 cut(s)	598
NdeII	GATC	5 cut(s)	40, 67, 297, 445, 569
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	2 cut(s)	286, 487
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	214, 266, 770
PkrI	GCNGC	1 cut(s)	735
PleI	GAGTC	3 cut(s)	467, 823, 864
PpsI	GAGTC	3 cut(s)	467, 823, 864
Psp124BI	GAGCTC	2 cut(s)	79, 566
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	2 cut(s)	286, 487
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	67, 569
RsaI	GTAC	2 cut(s)	828, 835
RsaNI	GTAC	2 cut(s)	827, 834
RseI	CAYNNNNRTG	1 cut(s)	806
SacI	GAGCTC	2 cut(s)	79, 566
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	4 cut(s)	35, 81, 255, 303
SatI	GCNGC	1 cut(s)	734
Sau3AI	GATC	5 cut(s)	40, 67, 297, 445, 569
SchI	GAGTC	3 cut(s)	467, 824, 865
ScrFI	CCNGG	1 cut(s)	699
SduI	GDGCHC	3 cut(s)	79, 566, 581
SexAI	ACCWGGT	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	6 cut(s)	47, 148, 252, 277, 351, 550
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	5 cut(s)	186, 339, 390, 774, 819
SstI	GAGCTC	2 cut(s)	79, 566
StyD4I	CCNGG	1 cut(s)	697
StyI	CCWWGG	2 cut(s)	203, 790
TaaI	ACNGT	6 cut(s)	57, 170, 403, 464, 542, 780
TaqI	TCGA	3 cut(s)	272, 321, 782
TasI	AATT	6 cut(s)	47, 148, 252, 277, 351, 550
TfiI	GAWTC	3 cut(s)	214, 266, 770
Tru1I	TTAA	4 cut(s)	35, 81, 255, 303
Tru9I	TTAA	4 cut(s)	35, 81, 255, 303
TscAI	CASTG	2 cut(s)	547, 829
TseI	GCWGC	1 cut(s)	733
TspDTI	ATGAA	2 cut(s)	333, 783
TspRI	CASTG	2 cut(s)	547, 829
XapI	RAATTY	3 cut(s)	47, 148, 550
XbaI	TCTAGA	1 cut(s)	773
XspI	CTAG	5 cut(s)	186, 339, 390, 774, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.