Rroxscaffold_3G00270620

Domain of unknown function (DUF4378)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
63176682 .. 63180604
3923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270620.1

Sequence Viewer

Length: 2904 bp
ATGTCTGTGCATATTCAATCTTCTGCTTATACTGGAATTGCACTTGAATCCATGAAGTTCTTTGTGCTTTTAGCAAATTTTACTGGACTGAAACTGACTTTTTACTGCTTGAAATTGCAGGAAATAAATTCAAACAAAAATGTGAATGAGAAACAAAGACTCTCAACAGAGTCATCACGGGCCTCTTTCTCGTCAACTTGTTCATCTTCCTTATCATCACTGGAGTGTAACAGAACAGCACAACCAGGAACCTCTTCCTTTGACAGAATCATTTTTCCTGAAACTCCCCCAAGGGATCCAGTGACTATCCACTCAAGTACCTCCCCTAGATTTGGAAGGCAGTCCCTTGATCTCCGGGATGTGGTAAAGGACTCTATGCATAGGGAAGCAAGGGGACTATCACTGAAAACTACAACCAGAGATGAAGCAGCAGGTAATGCAGTGAAGCGCAGAGACTCTCCAAGACCCTTGAAGCTGTCCAGACCAACAGATGGATCTAAAGGAGTCCAGACCAATGAGAAGCAAAATATGCCTGCTGATCTCAAGGAGTCTCTTAGAGTTCTTGCTCAACTTCGAGAAGCTCCTTGGCATTATGAAGATAGAGATCATCCAAGATCAGCATATGAATCAAAAGATAGTTTTTGGCATACAGTTCCAAAAGATGCTCCACGGTTTTCTTATGATGGGGGAGAGATGAATCGTTTATCCTTTGAATCAAGAGATACCTTCAGACCAACTCCAAAGCCAAAAGAGTTGCCAAGACTTTCACTGGATAGCAGAGAAGATTCAATGCGTGGTTCCCACTCTGACTCAAGATCAAATCATCTTTCAAAAGGGTTTCGGAATAGTGGCAGCTCCAATGGCAGGGATCCTAGTCTACCTCAGTCATCAGGAACTCAGAGTCGACCAAGTGTTGTAGCAAAGTTGATGGGTTTGGAAGCATTGCCAGATTCTGATAGTAACTTAAGTCTTTTCAAAACCAGCCCAGTTATAGAAAGTGATCCTTTCTCAAATCCACTGAAGACAAACAATCTATACAGGCCTATTCACACTTCAAACTCCCTGAGAAGCTCTCCAAAAGAACCAACATCACCAAGGTGGAAGAATCCAGATCTGGTTATGAGACCTGTTTCAAGTTCAAGGTTTCCAATTGAACCAGCACCTTGGAAAATGCAGGATGGAAATCGAGGTTATCAGAATCTATCTTCCAAACCTGTAAAAGCTCAAGGAAGGACCCAAAACTCCTTCCCGTCTGTTTATAGTGAGATAGAGAAGAGATTAAATGATCTGGAATTCAAACAGTCTGGAAAGGATCTTAGAGCTCTTAAACAGATATTGGAAGCAATGCAAGTAAAAGGGCTGTTAGAGACCAAAAAAGAAGAGCAAGCTTCAAATTTTGGAACTCAAAAGGACTGTGAACCAGAATGTTCTAGTTCCAATCCAGACCCAAGCCGAACAGCTAAAGATCATTCTCCTAAGAACAGTAGGAAAGAATCTTCTGTTGGCTCCACTGACAAAAAGTCAAGTGGCAGGAATGTAAAATCTCTTCCAAAGGAAAACAGTGCAACAAATTCAGCAAAGAGCTCAGGATCTGTGAGCCCAAGATTACAGCAGAAGAAGCTTGAGTTAGGGAAGCCATCTCGTCCACCTACCCCGCCATCTGATACAAGAAAACCGAGAAGGCAATCCAGCAGGCAATTAACAGACTCAACTTCACCTGGTAGAAAACTCAGACCAAAATCTTCCAACTTGCAGCAAAGTGATGACCAGTTGAGTGAGATAAGTAATGAATCTAGACGGTCGAGTTTCCAAGGAGATGACATAGATATGGAAGAGTCTAGCAGTGTACGAGGTACTGATACAAATGATAGCCAGAGTCCATCTCTGAAGGCTTCCAAGTATTTAGCTTCTGCTTCAATGCAACAGAAGTTAACTGCAAGGTTGGAAGAAGATGGGTCTGCTGTGGAACTCGCTACAGTTGCTCCAGAACATCCTAGTCCTGTCTCTGTACTTGATGCCTCAGCATATAGAGATGATGCACTATCTCCAGTAAAGCAGTTGCCTGAGGCCCTCAGAGGTGATAATGCTGAAGATTCAAATCTCAGAGTATGTGAAGATCAATGGAACCCTGCAGATAATCTTGCTTGCGTCGGGTCTGGCCTTACCTCAGAGATCAATCGTAAGAAATTGCAGAACATTGAGAACTTAGTTCAGAAGCTTAGACGATTGAACTCTAGTCATGATGAAGCAAGAACAGACTATATTGCATCACTATGCGAGAATTCAAATCCGGATCACAGATACATTTCTGAAATATTGTTAGCTTCAGGTCTCCTACTTAGAGACCTGGGGTCCAGCCTGACTACATTTCAGCTCCATCCCTCAGGTCACCCTATCAACCCTGAGTTGTTCTTTGTTTTGGAGCAAACCAAGGCTAGCAGTATGCTTGCAAAAGAAGAATGTATCCCCGAAAAGGCAACTCACGCAAAGCAAGAGAAGTTTCACCGGAAACTCATCTTCGATGCTGTCAATGAAATTCTTGTTGATAAGTTGGACTTAGTGGGCAGCCCTCTTGAGCCGTGGTTGAAGCCTGCAAGACTGGCAAAGAAAACCCTCAATGCACAAAAGCTTCTCAAGGAACTGTTTTTTGAGATAGAACAATTTCAAGCCAAGAAACTTGAGTGTAACTTAGAGGATGAGGATGATGGTTTGAGAAGCATATTGTGTGAAGATGTGATGCACAGGTCAGAAAGTTGGACAGTTTTCCATGCTGAGATTTCTGGGGCAGTCTTAGATGTTGAGAGGTTGATCTTTAAGGATTTGATCGACGAAATTGTTATTGGTGAAGCAGCTAGCTTGCGTGCCAAGCCAGCAGCCAGGCGTCGAAAGCTGTTTGCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

967

Amino Acids

107.84

Weight (kDa)

8.99

Isoelectric Point (pI)

64.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 303 - 320 4.6e-06 DUF761-associated sequence motif
DUF4378 PF14309 765 - 944 1.8e-35 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 491
AccI GTMKAC 2 cut(s) 877, 904
AccIII TCCGGA 1 cut(s) 2290
AciI CCGC 1 cut(s) 1655
AclWI GGATC 9 cut(s) 290, 303, 502, 863, 876, 995, 1320, 1597, 2301
AcsI RAATTY 7 cut(s) 76, 127, 1292, 1393, 1570, 2281, 2535
AcuI CTGAAG 5 cut(s) 712, 1040, 1907, 2109, 2310
AcyI GRCGYC 1 cut(s) 2881
AfaI GTAC 4 cut(s) 319, 1848, 1855, 2010
AfiI CCNNNNNNNGG 5 cut(s) 332, 361, 491, 864, 2473
AflII CTTAAG 1 cut(s) 964
AhdI GACNNNNNGTC 2 cut(s) 1519, 2350
AjnI CCWGG 4 cut(s) 244, 1717, 2346, 2876
AjuI GAANNNNNNNTTGG 4 cut(s) 1485, 1517, 2823, 2855
AleI CACNNNNGTG 2 cut(s) 223, 1096
Alw21I GWGCWC 2 cut(s) 1324, 1586
Alw26I GTCTC 7 cut(s) 447, 555, 1117, 1361, 2008, 2336, 2337
AlwI GGATC 9 cut(s) 290, 303, 502, 863, 876, 995, 1320, 1597, 2301
AlwNI CAGNNNCTG 2 cut(s) 953, 1592
Aor13HI TCCGGA 1 cut(s) 2290
AoxI GGCC 4 cut(s) 180, 1040, 2067, 2158
ApeKI GCWGC 6 cut(s) 428, 852, 1753, 2565, 2849, 2873
ApoI RAATTY 7 cut(s) 76, 127, 1292, 1393, 1570, 2281, 2535
Asp700I GAANNNNTTC 2 cut(s) 253, 2661
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 4 cut(s) 180, 1233, 2068, 2352
AsuC2I CCSGG 1 cut(s) 356
AsuHPI GGTGA 6 cut(s) 1083, 1707, 2090, 2381, 2495, 2855
AsuNHI GCTAGC 2 cut(s) 2435, 2852
AvaII GGWCC 2 cut(s) 1233, 2352
AxyI CCTNAGG 2 cut(s) 2064, 2383
BaeI ACNNNNGTAYC 2 cut(s) 301, 334
BamHI GGATCC 2 cut(s) 295, 868
BanII GRGCYC 3 cut(s) 1324, 1586, 1601
BarI GAAGNNNNNNTAC 2 cut(s) 1530, 1562
BbsI GAAGAC 1 cut(s) 1028
Bbv12I GWGCWC 2 cut(s) 1324, 1586
BbvCI CCTCAGC 1 cut(s) 2020
BbvI GCAGC 6 cut(s) 440, 864, 1765, 2577, 2861, 2885
BceAI ACGGC 1 cut(s) 2563
BciT130I CCWGG 4 cut(s) 246, 1719, 2348, 2878
BciVI GTATCC 1 cut(s) 2474
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 7 cut(s) 447, 555, 1117, 1361, 2008, 2336, 2337
BfaI CTAG 9 cut(s) 327, 873, 1431, 1794, 1839, 1995, 2235, 2436, 2853
BfmI CTRYAG 2 cut(s) 1974, 2130
BfrI CTTAAG 1 cut(s) 964
BfuAI ACCTGC 1 cut(s) 422
BfuI GTATCC 1 cut(s) 2474
BglII AGATCT 1 cut(s) 1111
BisI GCNGC 6 cut(s) 429, 853, 1754, 2566, 2850, 2874
BlsI GCNGC 6 cut(s) 430, 854, 1755, 2567, 2851, 2875
Bme1390I CCNGG 5 cut(s) 246, 356, 1719, 2348, 2878
Bme18I GGWCC 2 cut(s) 1233, 2352
BmeRI GACNNNNNGTC 2 cut(s) 1519, 2350
BmgT120I GGNCC 4 cut(s) 180, 1233, 2068, 2352
BmiI GGNNCC 8 cut(s) 250, 297, 799, 870, 1235, 1507, 2126, 2353
BmrFI CCNGG 5 cut(s) 246, 356, 1719, 2348, 2878
BmrI ACTGGG 1 cut(s) 980
BmsI GCATC 6 cut(s) 652, 2005, 2026, 2276, 2512, 2727
BmtI GCTAGC 2 cut(s) 2439, 2856
BmuI ACTGGG 1 cut(s) 980
BpiI GAAGAC 1 cut(s) 1028
BplI GAGNNNNNCTC 4 cut(s) 1057, 1089, 1867, 1899
BpmI CTGGAG 3 cut(s) 242, 1968, 2031
Bpu10I CCTNAGC 2 cut(s) 1585, 2020
BpuEI CTTGAG 8 cut(s) 298, 527, 796, 1209, 1643, 2594, 2618, 2699
BpuMI CCSGG 1 cut(s) 356
BsaBI GATNNNNATC 3 cut(s) 603, 1182, 2097
BsaHI GRCGYC 1 cut(s) 2881
BsaI GGTCTC 4 cut(s) 1117, 1361, 2336, 2337
BsaJI CCNNGG 9 cut(s) 290, 584, 668, 1094, 1163, 1810, 2347, 2430, 2579
BsaWI WCCGGW 2 cut(s) 2290, 2505
BsaXI ACNNNNNCTCC 2 cut(s) 1966, 1996
Bsc4I CCNNNNNNNGG 5 cut(s) 332, 361, 491, 864, 2473
Bse1I ACTGG 9 cut(s) 37, 88, 225, 299, 774, 986, 1768, 2048, 2604
Bse21I CCTNAGG 2 cut(s) 2064, 2383
Bse3DI GCAATG 2 cut(s) 941, 1350
Bse8I GATNNNNATC 3 cut(s) 603, 1182, 2097
BseAI TCCGGA 1 cut(s) 2290
BseBI CCWGG 4 cut(s) 246, 1719, 2348, 2878
BseDI CCNNGG 9 cut(s) 290, 584, 668, 1094, 1163, 1810, 2347, 2430, 2579
BseGI GGATG 7 cut(s) 364, 607, 1183, 1990, 2377, 2701, 2707
BseJI GATNNNNATC 3 cut(s) 603, 1182, 2097
BseLI CCNNNNNNNGG 5 cut(s) 332, 361, 491, 864, 2473
BseMI GCAATG 2 cut(s) 941, 1350
BseNI ACTGG 9 cut(s) 37, 88, 225, 299, 774, 986, 1768, 2048, 2604
BseXI GCAGC 6 cut(s) 440, 864, 1765, 2577, 2861, 2885
Bsh1285I CGRYCG 1 cut(s) 1802
BshFI GGCC 4 cut(s) 182, 1042, 2069, 2160
BsiEI CGRYCG 1 cut(s) 1802
BsiHKAI GWGCWC 2 cut(s) 1324, 1586
BsiSI CCGG 3 cut(s) 355, 2291, 2506
BslFI GGGAC 2 cut(s) 328, 408
BslI CCNNNNNNNGG 5 cut(s) 332, 361, 491, 864, 2473
BsmAI GTCTC 7 cut(s) 447, 555, 1117, 1361, 2008, 2336, 2337
BsmFI GGGAC 2 cut(s) 328, 408
BsnI GGCC 4 cut(s) 182, 1042, 2069, 2160
Bso31I GGTCTC 4 cut(s) 1117, 1361, 2336, 2337
Bsp1286I GDGCHC 3 cut(s) 1324, 1586, 1601
Bsp13I TCCGGA 1 cut(s) 2290
BspACI CCGC 1 cut(s) 1655
BspANI GGCC 4 cut(s) 182, 1042, 2069, 2160
BspEI TCCGGA 1 cut(s) 2290
BspHI TCATGA 1 cut(s) 2239
BspLI GGNNCC 8 cut(s) 250, 297, 799, 870, 1235, 1507, 2126, 2353
BspMAI CTGCAG 1 cut(s) 2134
BspMI ACCTGC 1 cut(s) 422
BspOI GCTAGC 2 cut(s) 2439, 2856
BspPI GGATC 9 cut(s) 290, 303, 502, 863, 876, 995, 1320, 1597, 2301
BspQI GCTCTTC 1 cut(s) 1374
BspTI CTTAAG 1 cut(s) 964
BspTNI GGTCTC 4 cut(s) 1117, 1361, 2336, 2337
BsrDI GCAATG 2 cut(s) 941, 1350
BsrI ACTGG 9 cut(s) 37, 88, 225, 299, 774, 986, 1768, 2048, 2604
BssECI CCNNGG 9 cut(s) 290, 584, 668, 1094, 1163, 1810, 2347, 2430, 2579
BssNI GRCGYC 1 cut(s) 2881
BssT1I CCWWGG 6 cut(s) 290, 584, 1094, 1163, 1810, 2430
Bst2UI CCWGG 4 cut(s) 246, 1719, 2348, 2878
Bst6I CTCTTC 5 cut(s) 259, 1268, 1374, 1551, 1827
BstACI GRCGYC 1 cut(s) 2881
BstAFI CTTAAG 1 cut(s) 964
BstAPI GCANNNNNTGC 2 cut(s) 437, 529
BstDSI CCRYGG 2 cut(s) 668, 2579
BstEII GGTNACC 1 cut(s) 2387
BstF5I GGATG 7 cut(s) 364, 607, 1183, 1990, 2377, 2701, 2707
BstHHI GCGC 1 cut(s) 450
BstMAI GTCTC 7 cut(s) 447, 555, 1117, 1361, 2008, 2336, 2337
BstMCI CGRYCG 1 cut(s) 1802
BstNI CCWGG 4 cut(s) 246, 1719, 2348, 2878
BstPI GGTNACC 1 cut(s) 2387
BstSCI CCNGG 5 cut(s) 244, 354, 1717, 2346, 2876
BstSFI CTRYAG 2 cut(s) 1974, 2130
BstV1I GCAGC 6 cut(s) 440, 864, 1765, 2577, 2861, 2885
BstV2I GAAGAC 1 cut(s) 1028
BstX2I RGATCY 6 cut(s) 295, 494, 868, 1111, 1312, 1589
BstXI CCANNNNNNTGG 1 cut(s) 1164
BstYI RGATCY 6 cut(s) 295, 494, 868, 1111, 1312, 1589
Bsu36I CCTNAGG 2 cut(s) 2064, 2383
BsuI GTATCC 1 cut(s) 2474
BsuRI GGCC 4 cut(s) 182, 1042, 2069, 2160
BtgI CCRYGG 2 cut(s) 668, 2579
BtsCI GGATG 7 cut(s) 364, 607, 1183, 1990, 2377, 2701, 2707
BtsI GCAGTG 2 cut(s) 447, 1849
BtsIMutI CAGTG 9 cut(s) 218, 306, 401, 447, 767, 1016, 1509, 1567, 1849
BveI ACCTGC 1 cut(s) 422
CaiI CAGNNNCTG 2 cut(s) 953, 1592
CciI TCATGA 1 cut(s) 2239
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 4 cut(s) 180, 1233, 2068, 2352
CseI GACGC 2 cut(s) 2137, 2870
CsiI ACCWGGT 1 cut(s) 1717
Csp6I GTAC 4 cut(s) 318, 1847, 1854, 2009
CviAII CATG 3 cut(s) 52, 2240, 2768
CviQI GTAC 4 cut(s) 318, 1847, 1854, 2009
DriI GACNNNNNGTC 2 cut(s) 1519, 2350
Eam1104I CTCTTC 5 cut(s) 259, 1268, 1374, 1551, 1827
Eam1105I GACNNNNNGTC 2 cut(s) 1519, 2350
EarI CTCTTC 5 cut(s) 259, 1268, 1374, 1551, 1827
Ecl136II GAGCTC 2 cut(s) 1322, 1584
Eco130I CCWWGG 6 cut(s) 290, 584, 1094, 1163, 1810, 2430
Eco147I AGGCCT 1 cut(s) 1042
Eco24I GRGCYC 3 cut(s) 1324, 1586, 1601
Eco31I GGTCTC 4 cut(s) 1117, 1361, 2336, 2337
Eco47I GGWCC 2 cut(s) 1233, 2352
Eco53kI GAGCTC 2 cut(s) 1322, 1584
Eco57I CTGAAG 5 cut(s) 712, 1040, 1907, 2109, 2310
Eco81I CCTNAGG 2 cut(s) 2064, 2383
Eco91I GGTNACC 1 cut(s) 2387
EcoICRI GAGCTC 2 cut(s) 1322, 1584
EcoO109I RGGNCCY 2 cut(s) 1233, 2068
EcoO65I GGTNACC 1 cut(s) 2387
EcoRI GAATTC 2 cut(s) 1292, 2281
EcoRII CCWGG 4 cut(s) 244, 1717, 2346, 2876
EcoT14I CCWWGG 6 cut(s) 290, 584, 1094, 1163, 1810, 2430
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 3 cut(s) 1324, 1586, 1601
ErhI CCWWGG 6 cut(s) 290, 584, 1094, 1163, 1810, 2430
FaeI CATG 3 cut(s) 55, 2243, 2771
FalI AAGNNNNNCTT 4 cut(s) 988, 1020, 2540, 2572
FaqI GGGAC 2 cut(s) 328, 408
FatI CATG 3 cut(s) 51, 2239, 2767
FauI CCCGC 1 cut(s) 1662
FauNDI CATATG 1 cut(s) 622
FblI GTMKAC 2 cut(s) 877, 904
Fnu4HI GCNGC 6 cut(s) 429, 853, 1754, 2566, 2850, 2874
FokI GGATG 7 cut(s) 371, 594, 1190, 1977, 2364, 2708, 2714
FriOI GRGCYC 3 cut(s) 1324, 1586, 1601
Fsp4HI GCNGC 6 cut(s) 429, 853, 1754, 2566, 2850, 2874
FspBI CTAG 9 cut(s) 327, 873, 1431, 1794, 1839, 1995, 2235, 2436, 2853
GlaI GCGC 1 cut(s) 449
GluI GCNGC 6 cut(s) 429, 853, 1754, 2566, 2850, 2874
GsuI CTGGAG 3 cut(s) 242, 1968, 2031
HaeIII GGCC 4 cut(s) 182, 1042, 2069, 2160
HapII CCGG 3 cut(s) 355, 2291, 2506
HgaI GACGC 2 cut(s) 2137, 2870
HhaI GCGC 1 cut(s) 450
Hin1I GRCGYC 1 cut(s) 2881
Hin1II CATG 3 cut(s) 55, 2243, 2771
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 3 cut(s) 195, 905, 1932
HindII GTYRAC 3 cut(s) 195, 905, 1932
HindIII AAGCTT 4 cut(s) 1386, 1619, 2216, 2627
HpaI GTTAAC 1 cut(s) 1932
HpaII CCGG 3 cut(s) 355, 2291, 2506
HphI GGTGA 6 cut(s) 1083, 1707, 2090, 2381, 2495, 2855
Hpy166II GTNNAC 7 cut(s) 195, 878, 905, 1418, 1646, 1847, 1932
Hpy8I GTNNAC 7 cut(s) 195, 878, 905, 1418, 1646, 1847, 1932
Hpy99I CGWCG 3 cut(s) 2153, 2831, 2886
HpyAV CCTTC 6 cut(s) 330, 736, 1224, 1255, 1674, 1882
Hsp92I GRCGYC 1 cut(s) 2881
Hsp92II CATG 3 cut(s) 55, 2243, 2771
HspAI GCGC 1 cut(s) 448
Kpn2I TCCGGA 1 cut(s) 2290
KspAI GTTAAC 1 cut(s) 1932
LguI GCTCTTC 1 cut(s) 1374
LmnI GCTCC 7 cut(s) 586, 670, 860, 1511, 1987, 2379, 2422
Lsp1109I GCAGC 6 cut(s) 440, 864, 1765, 2577, 2861, 2885
LweI GCATC 6 cut(s) 652, 2005, 2026, 2276, 2512, 2727
MabI ACCWGGT 1 cut(s) 1717
MaeI CTAG 9 cut(s) 327, 873, 1431, 1794, 1839, 1995, 2235, 2436, 2853
MaeIII GTNAC 5 cut(s) 227, 301, 959, 2387, 2684
MfeI CAATTG 1 cut(s) 1149
MflI RGATCY 6 cut(s) 295, 494, 868, 1111, 1312, 1589
MhlI GDGCHC 3 cut(s) 1324, 1586, 1601
MmeI TCCRAC 4 cut(s) 1770, 1923, 2532, 2735
Mph1103I ATGCAT 1 cut(s) 381
MroI TCCGGA 1 cut(s) 2290
MroXI GAANNNNTTC 2 cut(s) 253, 2661
MseI TTAA 6 cut(s) 965, 1280, 1326, 1700, 1931, 2814
MslI CAYNNNNRTG 4 cut(s) 223, 1096, 1826, 2272
MspCI CTTAAG 1 cut(s) 964
MspI CCGG 3 cut(s) 355, 2291, 2506
MspR9I CCNGG 5 cut(s) 246, 356, 1719, 2348, 2878
MunI CAATTG 1 cut(s) 1149
MvaI CCWGG 4 cut(s) 246, 1719, 2348, 2878
NciI CCSGG 1 cut(s) 356
NdeI CATATG 1 cut(s) 622
NheI GCTAGC 2 cut(s) 2435, 2852
NlaIII CATG 3 cut(s) 55, 2243, 2771
NlaIV GGNNCC 8 cut(s) 250, 297, 799, 870, 1235, 1507, 2126, 2353
NmuCI GTSAC 2 cut(s) 301, 2387
NsiI ATGCAT 1 cut(s) 381
OliI CACNNNNGTG 2 cut(s) 223, 1096
PagI TCATGA 1 cut(s) 2239
PceI AGGCCT 1 cut(s) 1042
PciSI GCTCTTC 1 cut(s) 1374
PdmI GAANNNNTTC 2 cut(s) 253, 2661
PflMI CCANNNNNTGG 1 cut(s) 491
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 6 cut(s) 430, 854, 1755, 2567, 2851, 2875
PpuMI RGGWCCY 1 cut(s) 1233
Psp124BI GAGCTC 2 cut(s) 1324, 1586
Psp5II RGGWCCY 1 cut(s) 1233
Psp6I CCWGG 4 cut(s) 244, 1717, 2346, 2876
PspEI GGTNACC 1 cut(s) 2387
PspGI CCWGG 4 cut(s) 244, 1717, 2346, 2876
PspN4I GGNNCC 8 cut(s) 250, 297, 799, 870, 1235, 1507, 2126, 2353
PspPI GGNCC 4 cut(s) 180, 1233, 2068, 2352
PspPPI RGGWCCY 1 cut(s) 1233
PstI CTGCAG 1 cut(s) 2134
PstNI CAGNNNCTG 2 cut(s) 953, 1592
PsuI RGATCY 6 cut(s) 295, 494, 868, 1111, 1312, 1589
RsaI GTAC 4 cut(s) 319, 1848, 1855, 2010
RsaNI GTAC 4 cut(s) 318, 1847, 1854, 2009
RseI CAYNNNNRTG 4 cut(s) 223, 1096, 1826, 2272
SacI GAGCTC 2 cut(s) 1324, 1586
SalI GTCGAC 1 cut(s) 903
SapI GCTCTTC 1 cut(s) 1374
SaqAI TTAA 6 cut(s) 965, 1280, 1326, 1700, 1931, 2814
SatI GCNGC 6 cut(s) 429, 853, 1754, 2566, 2850, 2874
Sau96I GGNCC 4 cut(s) 180, 1233, 2068, 2352
ScrFI CCNGG 5 cut(s) 246, 356, 1719, 2348, 2878
SduI GDGCHC 3 cut(s) 1324, 1586, 1601
SexAI ACCWGGT 1 cut(s) 1717
SfaNI GCATC 6 cut(s) 652, 2005, 2026, 2276, 2512, 2727
SfcI CTRYAG 2 cut(s) 1974, 2130
SinI GGWCC 2 cut(s) 1233, 2352
SmiMI CAYNNNNRTG 4 cut(s) 223, 1096, 1826, 2272
SmlI CTYRAG 9 cut(s) 313, 542, 811, 964, 1224, 1622, 2573, 2633, 2678
SmoI CTYRAG 9 cut(s) 313, 542, 811, 964, 1224, 1622, 2573, 2633, 2678
SseBI AGGCCT 1 cut(s) 1042
SsiI CCGC 1 cut(s) 1655
SspI AATATT 1 cut(s) 2316
SspMI CTAG 9 cut(s) 327, 873, 1431, 1794, 1839, 1995, 2235, 2436, 2853
SstI GAGCTC 2 cut(s) 1324, 1586
StuI AGGCCT 1 cut(s) 1042
StyD4I CCNGG 5 cut(s) 244, 354, 1717, 2346, 2876
StyI CCWWGG 6 cut(s) 290, 584, 1094, 1163, 1810, 2430
TaqI TCGA 7 cut(s) 574, 904, 1186, 1802, 2520, 2826, 2884
TatI WGTACW 1 cut(s) 2008
Tru1I TTAA 6 cut(s) 965, 1280, 1326, 1700, 1931, 2814
Tru9I TTAA 6 cut(s) 965, 1280, 1326, 1700, 1931, 2814
TscAI CASTG 9 cut(s) 225, 306, 408, 447, 774, 1023, 1516, 1567, 1849
TseFI GTSAC 2 cut(s) 301, 2387
TseI GCWGC 6 cut(s) 428, 852, 1753, 2565, 2849, 2873
Tsp45I GTSAC 2 cut(s) 301, 2387
TspDTI ATGAA 9 cut(s) 68, 192, 438, 609, 639, 710, 1803, 2259, 2547
TspRI CASTG 9 cut(s) 225, 306, 408, 447, 774, 1023, 1516, 1567, 1849
Van91I CCANNNNNTGG 1 cut(s) 491
Vha464I CTTAAG 1 cut(s) 964
VpaK11BI GGWCC 2 cut(s) 1233, 2352
XapI RAATTY 7 cut(s) 76, 127, 1292, 1393, 1570, 2281, 2535
XbaI TCTAGA 1 cut(s) 1793
XmiI GTMKAC 2 cut(s) 877, 904
XmnI GAANNNNTTC 2 cut(s) 253, 2661
XspI CTAG 9 cut(s) 327, 873, 1431, 1794, 1839, 1995, 2235, 2436, 2853
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.