Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8448119.1

Orthogroup ID

OG0005458

Physical Location & Seq

Genomic Coordinates Reverse (-)

353 .. 1332

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8448119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggtgtactataaccatataacatttgatgagccacatattgatcatggtgatgatgctgaagattcaaatctcagagtatgtgaagatcaatggaaccctgcagataatcttgccagcatcgggtctggtcttacctcagagattaatcgtaagaaattgcagaacattgagaacttagttcagaagcttagacgattgaactctagtcatgatgaagcaagaacagactatattgcatcactatgcgagaattcaaatccggatcacagatacatttctgaaatattgttagcttcaggtctcctacttagagacctggggtccagcctgactacatttcagctccatccctcaggtcaccctatcaaccctgagttgttctttgttttggagcaaaccaaggctagcagtatgcttgcaaaagaagaatgtatccctgaaaaggcaactcacgcaaagcaagagaagtttcaccggaaactcattttcgatgctgtcaatgaaattcttgttgataagttgggcttagttggcagccctcttgagccgtggttgaagcctgcaagactggcaaagaaaaccctcaatgcacaaaagcttctcaaggaactgtttttcgagatagaacaatttcaagccaagaaacttgagtgcaacttagaggatgaggatgatggtttgaaaagcatattgtgtgaagatgtgatgcataggtcagaaagttggacagttttccatgctgagatttctggggcagtcttagatgttgagaggttgatctttaaggatttgatcgacgaaattgttattggtgaagcagctagcttgcgtgccaagccagcagccaggcgtcgaaagctgtttgctaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

291

Amino Acids

33.07

Weight (kDa)

5.52

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18620 AT1G18620 AT1G18620 AT1G18620 AT1G18620 AT1G74160 AT1G74160 AT1G74160
fragaria_vesca	FvH4_5g13690 FvH4_5g13690 FvH4_5g13690
malus_domestica	MD06G1203000.v1.1 MD14G1213600.v1.1
prunus_persica	Prupe.5G206500_v2.0.a1
pyrus_communis	pycom06g18080 pycom14g17690
rosa_chinensis	RchiOBHm_Chr7g0183251
rosa_laevigata	RLG00000005062
rosa_multiflora	Rmu_co8293079.1_g000001 Rmu_co8448119.1_g000001 Rmu_sc0008744.1_g000012
rosa_roxburghii	Rroxscaffold_3G00270620
rosa_rugosa	Rorug06G0455500 Rorug06G0455600
rosa_samantha	Rh7AG057500 Rh7BG057400 Rh7CG059000 Rh7DG057200
rosa_wichuraiana	Rw7G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	262
AclWI	GGATC	1 cut(s)	273
AcsI	RAATTY	2 cut(s)	253, 507
AcuI	CTGAAG	2 cut(s)	81, 282
AcyI	GRCGYC	1 cut(s)	853
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	123, 445
AgsI	TTSAA	6 cut(s)	69, 202, 258, 559, 638, 685
AhdI	GACNNNNNGTC	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	318, 848
AjuI	GAANNNNNNNTTGG	2 cut(s)	795, 827
AluBI	AGCT	7 cut(s)	190, 296, 346, 601, 824, 828, 862
AluI	AGCT	7 cut(s)	190, 296, 346, 601, 824, 828, 862
Alw26I	GTCTC	2 cut(s)	308, 309
AlwI	GGATC	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	262
ApeKI	GCWGC	3 cut(s)	537, 821, 845
ApoI	RAATTY	2 cut(s)	253, 507
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	4 cut(s)	62, 353, 467, 827
AsuNHI	GCTAGC	2 cut(s)	407, 824
AvaII	GGWCC	1 cut(s)	324
AxyI	CCTNAGG	1 cut(s)	355
BbvI	GCAGC	3 cut(s)	549, 833, 857
BccI	CCATC	2 cut(s)	357, 671
BceAI	ACGGC	1 cut(s)	535
BciT130I	CCWGG	2 cut(s)	320, 850
BciVI	GTATCC	1 cut(s)	446
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	308, 309
BfaI	CTAG	3 cut(s)	207, 408, 825
BfmI	CTRYAG	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	3 cut(s)	538, 822, 846
BlsI	GCNGC	3 cut(s)	539, 823, 847
Bme1390I	CCNGG	2 cut(s)	320, 850
Bme18I	GGWCC	1 cut(s)	324
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	98, 325
BmrFI	CCNGG	2 cut(s)	320, 850
BmsI	GCATC	5 cut(s)	46, 129, 248, 484, 699
BmtI	GCTAGC	2 cut(s)	411, 828
BpuEI	CTTGAG	3 cut(s)	566, 590, 671
BsaBI	GATNNNNATC	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	853
BsaI	GGTCTC	2 cut(s)	308, 309
BsaJI	CCNNGG	3 cut(s)	319, 402, 551
BsaWI	WCCGGW	2 cut(s)	262, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 445
Bse1I	ACTGG	1 cut(s)	576
Bse21I	CCTNAGG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	320, 850
BseDI	CCNNGG	3 cut(s)	319, 402, 551
BseGI	GGATG	3 cut(s)	349, 673, 679
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	123, 445
BseMII	CTCAG	5 cut(s)	88, 153, 366, 369, 735
BseNI	ACTGG	1 cut(s)	576
BseXI	GCAGC	3 cut(s)	549, 833, 857
BsiSI	CCGG	2 cut(s)	263, 478
BslI	CCNNNNNNNGG	2 cut(s)	123, 445
BsmAI	GTCTC	2 cut(s)	308, 309
Bso31I	GGTCTC	2 cut(s)	308, 309
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	5 cut(s)	43, 88, 265, 780, 795
BspCNI	CTCAG	5 cut(s)	87, 152, 367, 368, 736
BspEI	TCCGGA	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	98, 325
BspMAI	CTGCAG	1 cut(s)	106
BspOI	GCTAGC	2 cut(s)	411, 828
BspPI	GGATC	1 cut(s)	273
BspTNI	GGTCTC	2 cut(s)	308, 309
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	3 cut(s)	319, 402, 551
BssMI	GATC	5 cut(s)	43, 88, 265, 780, 795
BssNI	GRCGYC	1 cut(s)	853
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	2 cut(s)	320, 850
Bst4CI	ACNGT	2 cut(s)	615, 733
BstACI	GRCGYC	1 cut(s)	853
BstC8I	GCNNGC	8 cut(s)	118, 409, 420, 564, 826, 830, 834, 843
BstDSI	CCRYGG	1 cut(s)	551
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	3 cut(s)	349, 673, 679
BstKTI	GATC	5 cut(s)	46, 91, 268, 783, 798
BstMAI	GTCTC	2 cut(s)	308, 309
BstMBI	GATC	5 cut(s)	43, 88, 265, 780, 795
BstMWI	GCNNNNNNNGC	6 cut(s)	455, 534, 572, 838, 842, 859
BstNI	CCWGG	2 cut(s)	320, 850
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	318, 848
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	549, 833, 857
Bsu36I	CCTNAGG	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	446
BtgI	CCRYGG	1 cut(s)	551
BtsCI	GGATG	3 cut(s)	349, 673, 679
Cac8I	GCNNGC	8 cut(s)	118, 409, 420, 564, 826, 830, 834, 843
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	3 cut(s)	47, 212, 740
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	5 cut(s)	45, 90, 267, 782, 797
DpnII	GATC	5 cut(s)	43, 88, 265, 780, 795
DriI	GACNNNNNGTC	1 cut(s)	322
Eam1105I	GACNNNNNGTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	402
Eco31I	GGTCTC	2 cut(s)	308, 309
Eco47I	GGWCC	1 cut(s)	324
Eco57I	CTGAAG	2 cut(s)	81, 282
Eco81I	CCTNAGG	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	318, 848
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	3 cut(s)	50, 215, 743
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FatI	CATG	3 cut(s)	46, 211, 739
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	538, 822, 846
FokI	GGATG	3 cut(s)	336, 680, 686
Fsp4HI	GCNGC	3 cut(s)	538, 822, 846
FspBI	CTAG	3 cut(s)	207, 408, 825
GluI	GCNGC	3 cut(s)	538, 822, 846
HapII	CCGG	2 cut(s)	263, 478
HgaI	GACGC	1 cut(s)	842
Hin1I	GRCGYC	1 cut(s)	853
Hin1II	CATG	3 cut(s)	50, 215, 743
HindIII	AAGCTT	2 cut(s)	188, 599
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	2 cut(s)	263, 478
HphI	GGTGA	4 cut(s)	62, 353, 467, 827
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	5 cut(s)	77, 142, 186, 283, 721
Hpy188III	TCNNGA	4 cut(s)	212, 263, 545, 622
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	2 cut(s)	803, 858
HpyCH4III	ACNGT	2 cut(s)	615, 733
HpyCH4V	TGCA	8 cut(s)	104, 163, 239, 422, 566, 593, 657, 712
HpyF10VI	GCNNNNNNNGC	6 cut(s)	455, 534, 572, 838, 842, 859
Hsp92I	GRCGYC	1 cut(s)	853
Hsp92II	CATG	3 cut(s)	50, 215, 743
Kpn2I	TCCGGA	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	43, 88, 265, 780, 795
LmnI	GCTCC	2 cut(s)	351, 394
Lsp1109I	GCAGC	3 cut(s)	549, 833, 857
LweI	GCATC	5 cut(s)	46, 129, 248, 484, 699
MaeI	CTAG	3 cut(s)	207, 408, 825
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	5 cut(s)	45, 90, 267, 782, 797
MboI	GATC	5 cut(s)	43, 88, 265, 780, 795
MboII	GAAGA	4 cut(s)	74, 98, 440, 713
MluCI	AATT	5 cut(s)	158, 253, 507, 632, 804
MmeI	TCCRAC	1 cut(s)	707
MnlI	CCTC	7 cut(s)	148, 364, 552, 596, 658, 664, 768
Mph1103I	ATGCAT	1 cut(s)	714
MroI	TCCGGA	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	2 cut(s)	147, 786
MslI	CAYNNNNRTG	2 cut(s)	51, 244
MspI	CCGG	2 cut(s)	263, 478
MspR9I	CCNGG	2 cut(s)	320, 850
MvaI	CCWGG	2 cut(s)	320, 850
MwoI	GCNNNNNNNGC	6 cut(s)	455, 534, 572, 838, 842, 859
NdeII	GATC	5 cut(s)	43, 88, 265, 780, 795
NheI	GCTAGC	2 cut(s)	407, 824
NlaIII	CATG	3 cut(s)	50, 215, 743
NlaIV	GGNNCC	2 cut(s)	98, 325
NmuCI	GTSAC	1 cut(s)	359
NsiI	ATGCAT	1 cut(s)	714
PagI	TCATGA	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	539, 823, 847
PshBI	ATTAAT	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	318, 848
PspEI	GGTNACC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	318, 848
PspN4I	GGNNCC	2 cut(s)	98, 325
PspPI	GGNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	51, 244
SaqAI	TTAA	2 cut(s)	147, 786
SatI	GCNGC	3 cut(s)	538, 822, 846
Sau3AI	GATC	5 cut(s)	43, 88, 265, 780, 795
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	320, 850
SfaNI	GCATC	5 cut(s)	46, 129, 248, 484, 699
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	51, 244
SmlI	CTYRAG	3 cut(s)	545, 605, 650
SmoI	CTYRAG	3 cut(s)	545, 605, 650
Sse9I	AATT	5 cut(s)	158, 253, 507, 632, 804
SspI	AATATT	1 cut(s)	288
SspMI	CTAG	3 cut(s)	207, 408, 825
StyD4I	CCNGG	2 cut(s)	318, 848
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	615, 733
TaqI	TCGA	4 cut(s)	492, 621, 798, 856
TasI	AATT	5 cut(s)	158, 253, 507, 632, 804
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	147, 786
Tru9I	TTAA	2 cut(s)	147, 786
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	3 cut(s)	537, 821, 845
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	231, 519
VpaK11BI	GGWCC	1 cut(s)	324
VspI	ATTAAT	1 cut(s)	147
XapI	RAATTY	2 cut(s)	253, 507
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	3 cut(s)	207, 408, 825
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.