Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005458

Physical Location & Seq

Genomic Coordinates Reverse (-)

3938869 .. 3945484

Gene Structure 6616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG057500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGCATAGGGAAGCAAGGGGACTATCACTGAAAACTACAACCAGAGATGAAGCAGCAGGTAATACAGTGAAGTGCAGAGACTCTCCAAGACCCTTGAAGCTGTCCAGACCAACAGATGGATCTGATGGAGTCAGGACCAATGAGAAGCAAAATATGCCTGCTGATCTTAAGGAGTCTCTTAGAGTTCTTGCTCAACTTCGAGAAGCTCCTTGGCATTATGAAGATAGAGATCATCCAAGATCAACATATGAATCAAAAGATAGTTTTTGGCATACAGTTCCAAAAGATGCTCCGCGGTTTTCTTATGATGGGAGAGAGATGAATCGTTTATCCTTTGAATCAAGAGATACCTGCAGATCAACTCCAAAGCCAAAAGAGTTGCCGAGACTTTCACTGGATAGCAGAGAAGATTCAATGCGTGGTTCCCACTCTGACTCAAGATCAAATCATCTTTCAAAAGGGTTTCGGAATAGTGGCAGCTCCAATGGCAGGGATCCTAGTCTACCTCAGTCATCAGGAACTCAGAGTCGACCAAGTGTTGTAGCAAAGTTGATGGGTTTGGAAGCATTGCCAGATTCTGATAGTAACTTAAGTCTGATCAAAACCAGCCCAGTTATAGAAAGTAATCCTTTCTCAAAACCACTGAAGACAAACAATCTATACAGGCCTATTCACACTTCAAACTCCCTGAGAAGCTCTCCAAAAGAACCAACATCACCAAGGTGGAAGAATCCAGATCTGGTTATGAGACCTGTTTCAAGTTCAAGGTTTCCAATTGAACCAGCACCTTGGAAAATGCAGGATGGAAATCGAGGTTATCAATCTTCCAAACCTGAAAAAGCTCAAGGAAGGACCCAAAACTCCTTCCCGTCTGTTTATAGTGAGATAGAGAAGAGATTAAATTATCTGGAATTCAAACAGTCTGGAAAGGATCTTAGAGCTCTTAAACAGATATTGGAAGCAATGCAAGTAAAAGGGCTGTTAGAAACCAAAAAAGAAGAGCAAGCTTCAAATTTTGAAACTCAAAAGGACTGTGAACCAGAATGTTCTAGTTCCAATCCAGACCCAAGGTCTGTGAATCAAAGAAACAGAAACAGCCATGCTATGTCTTCCAGAATTAAAAGCTCTGATTCCTCGAAGAATTATGGTTCCCCGATTGTGATCATTAAACCTGCAAAGGTTGTCGAAAAGTCTGGTCTTCCTAGTTCATCACTAATTTCAATGGATGGCCTGTCTGATGTCCATACTGCTCCTAGAGGGGGAACAGTAGATAACAAGAGGGTTTCAACTAACAGCCGAACAGCTAAAGATCATTCTCCTAAGAACAGTAGGAAAGACTCTTCTGTTGGCTCCATTGACAAAAAGCCAAGTGGCAGGAATGTAAAATCTCTTCCAAAGGAAAACAGTGCAACAAATTCAGCAAAGAGCTCAGGATCTGTGAGCCCAAGACTACAGCAGAAGAAGCTTGAGTTGGGGAAGCCATCTCGTCCACCTACCCCGCCATCTGATACAAGAAAACCGAGAAGGCAATCCAGCAGGCAATCAACAGACGCAACTTCACCTGGTAGAAAACTCAGACCAAAATCTTCCAACTTGCAGCAAAGTGATGACCAGTTGAGTGAGATAAGTAATGAATCTAGACGGTCAAGTTTCCAAGGAGATGACATAGATATGGAAGAGTCTAGCAGTGTACGAGGTACTGATACAAATGATTGCCAGAGTCCATCTCTGAAGGCTTCCAAGTATTTAGCTTCTGCTTCAATGCAACAGAAGTTAACTGCAAGGTTGGAAGAAGATGGGTCTGCTGTGGAACTCGCTACAGTTGGTCCAGAACATCCTAGTCCTGTCTCTGTACTTGATACCTCAGCATATAGAGATGATGCACTATCTCCAGTAAAGCAGTTGCCTGACGCCCTCAGAGGTGATGATGCTGAAGATTCAAATCTCAGAGTATGTGAAGATCAATGGAACCCTGCAGATAATCTTGCCAGCATCGGGTCTGGTCTTACCTCAGAGATTAATCGTAAGAAATTGCAGAACATTGAGAACTTAGTTCAGAAGCTTAGACGATTGAACTCTAGTCATGATGAAGCAAGAACAGACTATATTGCATCACTATGCGAGAATTCAAATCCGGATCACAGATACATTTCTGAAATATTGTTAGCTTCAGGTCTCCTACTTAGAGACCTGGGGTCCAGCCTGACTACATTTCAGCTCCATCCCTCAGGTCACCCTATCAACCCTGAGTTGTTCTTTGTTTTGGAGCAAACCAAGGCTAGCAGTATGCTTGCAAAAGAAGAATGTATCCCTGAAAAGGCAACTCACGCAAAGCAAGAGAAGTTTCACCGGAAACTCATTTTCGATGCTGTCAATGAAATTCTTGTTGATAAGTTGGGCTTAGTTGGCAGCCCTCTTGAGCCGTGGTTGAAGCCTGCAAGACTGGCAAAGAAAACCCTCAATGCACAAAAGCTTCTCAAGGAACTGTTTTTCGAGATAGAACAATTTCAAGCCAAGAAACTTGAGTGCAACTTAGAGGATGAGGATGATGGTTTGAAAAGCATATTGTGTGAAGATGTGATGCATAGGTCAGAAAGTTGGACAGTTTTCCATGCTGAGATTTCTGGGGCAGTCTTAGATGTTGAGAGGTTGATCTTTAAGGATTTGATCGACGAAATTGTTATTGGTGAAGCAGCTAGCTTGCGTGCCAAGCCAGCAGCCAGGCGTCGAAAGCTGTTTGCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

915

Amino Acids

101.84

Weight (kDa)

9.17

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	178 - 195	4.3e-06	DUF761-associated sequence motif
DUF4378	PF14309	713 - 892	2.1e-35	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18620 AT1G18620 AT1G18620 AT1G18620 AT1G18620 AT1G74160 AT1G74160 AT1G74160
fragaria_vesca	FvH4_5g13690 FvH4_5g13690 FvH4_5g13690
malus_domestica	MD06G1203000.v1.1 MD14G1213600.v1.1
prunus_persica	Prupe.5G206500_v2.0.a1
pyrus_communis	pycom06g18080 pycom14g17690
rosa_chinensis	RchiOBHm_Chr7g0183251
rosa_laevigata	RLG00000005062
rosa_multiflora	Rmu_co8293079.1_g000001 Rmu_co8448119.1_g000001 Rmu_sc0008744.1_g000012
rosa_roxburghii	Rroxscaffold_3G00270620
rosa_rugosa	Rorug06G0455500 Rorug06G0455600
rosa_samantha	Rh7AG057500 Rh7BG057400 Rh7CG059000 Rh7DG057200
rosa_wichuraiana	Rw7G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	47, 359, 1180
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccI	GTMKAC	2 cut(s)	502, 529
AccII	CGCG	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	2134
AciI	CCGC	3 cut(s)	293, 295, 1499
AclWI	GGATC	6 cut(s)	127, 488, 501, 939, 1441, 2145
AcsI	RAATTY	5 cut(s)	911, 1012, 1414, 2125, 2379
AcuI	CTGAAG	4 cut(s)	665, 1751, 1953, 2154
AcyI	GRCGYC	2 cut(s)	1911, 2725
AfaI	GTAC	3 cut(s)	1692, 1699, 1854
AfiI	CCNNNNNNNGG	5 cut(s)	116, 489, 1259, 1995, 2317
AflII	CTTAAG	2 cut(s)	167, 589
AhdI	GACNNNNNGTC	2 cut(s)	1069, 2194
AjnI	CCWGG	3 cut(s)	1561, 2190, 2720
AjuI	GAANNNNNNNTTGG	4 cut(s)	1454, 1486, 2667, 2699
AleI	CACNNNNGTG	1 cut(s)	721
Alw21I	GWGCWC	2 cut(s)	943, 1430
Alw26I	GTCTC	7 cut(s)	72, 180, 379, 742, 1852, 2180, 2181
AlwI	GGATC	6 cut(s)	127, 488, 501, 939, 1441, 2145
AlwNI	CAGNNNCTG	2 cut(s)	578, 1436
Aor13HI	TCCGGA	1 cut(s)	2134
AoxI	GGCC	2 cut(s)	665, 1228
ApeKI	GCWGC	6 cut(s)	53, 477, 1597, 2409, 2693, 2717
ApoI	RAATTY	5 cut(s)	911, 1012, 1414, 2125, 2379
AseI	ATTAAT	1 cut(s)	2019
Asp700I	GAANNNNTTC	1 cut(s)	2505
AspS9I	GGNCC	4 cut(s)	135, 852, 1826, 2196
AsuHPI	GGTGA	6 cut(s)	708, 1551, 1934, 2225, 2339, 2699
AsuNHI	GCTAGC	2 cut(s)	2279, 2696
AvaII	GGWCC	4 cut(s)	135, 852, 1826, 2196
AxyI	CCTNAGG	1 cut(s)	2227
BamHI	GGATCC	1 cut(s)	493
BanII	GRGCYC	3 cut(s)	943, 1430, 1445
BarI	GAAGNNNNNNTAC	2 cut(s)	1374, 1406
BbsI	GAAGAC	3 cut(s)	653, 1101, 1190
Bbv12I	GWGCWC	2 cut(s)	943, 1430
BbvCI	CCTCAGC	1 cut(s)	1864
BbvI	GCAGC	6 cut(s)	65, 489, 1609, 2421, 2705, 2729
BceAI	ACGGC	1 cut(s)	2407
BciT130I	CCWGG	3 cut(s)	1563, 2192, 2722
BciVI	GTATCC	1 cut(s)	2318
BclI	TGATCA	2 cut(s)	597, 1161
BcoDI	GTCTC	7 cut(s)	72, 180, 379, 742, 1852, 2180, 2181
BfmI	CTRYAG	4 cut(s)	352, 1451, 1818, 1974
BfrI	CTTAAG	2 cut(s)	167, 589
BfuAI	ACCTGC	3 cut(s)	47, 359, 1180
BfuI	GTATCC	1 cut(s)	2318
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	6 cut(s)	54, 478, 1598, 2410, 2694, 2718
BlsI	GCNGC	6 cut(s)	55, 479, 1599, 2411, 2695, 2719
Bme1390I	CCNGG	3 cut(s)	1563, 2192, 2722
Bme18I	GGWCC	4 cut(s)	135, 852, 1826, 2196
BmeRI	GACNNNNNGTC	2 cut(s)	1069, 2194
BmgT120I	GGNCC	4 cut(s)	135, 852, 1826, 2196
BmiI	GGNNCC	7 cut(s)	424, 495, 854, 1150, 1351, 1970, 2197
BmrFI	CCNGG	3 cut(s)	1563, 2192, 2722
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	7 cut(s)	277, 1870, 1918, 2001, 2120, 2356, 2571
BmtI	GCTAGC	2 cut(s)	2283, 2700
BmuI	ACTGGG	1 cut(s)	605
BpiI	GAAGAC	3 cut(s)	653, 1101, 1190
BplI	GAGNNNNNCTC	4 cut(s)	682, 714, 1711, 1743
BpmI	CTGGAG	1 cut(s)	1875
Bpu10I	CCTNAGC	2 cut(s)	1429, 1864
BpuEI	CTTGAG	6 cut(s)	421, 828, 1487, 2438, 2462, 2543
BsaBI	GATNNNNATC	4 cut(s)	228, 807, 1160, 1941
BsaHI	GRCGYC	2 cut(s)	1911, 2725
BsaI	GGTCTC	3 cut(s)	742, 2180, 2181
BsaJI	CCNNGG	9 cut(s)	209, 293, 719, 788, 1067, 1654, 2191, 2274, 2423
BsaWI	WCCGGW	2 cut(s)	2134, 2349
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 489, 1259, 1995, 2317
Bse1I	ACTGG	5 cut(s)	399, 611, 1612, 1892, 2448
Bse21I	CCTNAGG	1 cut(s)	2227
Bse3DI	GCAATG	2 cut(s)	566, 969
Bse8I	GATNNNNATC	4 cut(s)	228, 807, 1160, 1941
BseAI	TCCGGA	1 cut(s)	2134
BseBI	CCWGG	3 cut(s)	1563, 2192, 2722
BseDI	CCNNGG	9 cut(s)	209, 293, 719, 788, 1067, 1654, 2191, 2274, 2423
BseGI	GGATG	7 cut(s)	232, 808, 1231, 1834, 2221, 2545, 2551
BseJI	GATNNNNATC	4 cut(s)	228, 807, 1160, 1941
BseLI	CCNNNNNNNGG	5 cut(s)	116, 489, 1259, 1995, 2317
BseMI	GCAATG	2 cut(s)	566, 969
BseNI	ACTGG	5 cut(s)	399, 611, 1612, 1892, 2448
BseXI	GCAGC	6 cut(s)	65, 489, 1609, 2421, 2705, 2729
BsgI	GTGCAG	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	667, 1230
BsiHKAI	GWGCWC	2 cut(s)	943, 1430
BsiSI	CCGG	2 cut(s)	2135, 2350
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	5 cut(s)	116, 489, 1259, 1995, 2317
BsmAI	GTCTC	7 cut(s)	72, 180, 379, 742, 1852, 2180, 2181
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	667, 1230
Bso31I	GGTCTC	3 cut(s)	742, 2180, 2181
Bsp1286I	GDGCHC	3 cut(s)	943, 1430, 1445
Bsp13I	TCCGGA	1 cut(s)	2134
BspACI	CCGC	3 cut(s)	293, 295, 1499
BspANI	GGCC	2 cut(s)	667, 1230
BspEI	TCCGGA	1 cut(s)	2134
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	2083
BspLI	GGNNCC	7 cut(s)	424, 495, 854, 1150, 1351, 1970, 2197
BspMAI	CTGCAG	2 cut(s)	356, 1978
BspMI	ACCTGC	3 cut(s)	47, 359, 1180
BspOI	GCTAGC	2 cut(s)	2283, 2700
BspPI	GGATC	6 cut(s)	127, 488, 501, 939, 1441, 2145
BspQI	GCTCTTC	1 cut(s)	993
BspTI	CTTAAG	2 cut(s)	167, 589
BspTNI	GGTCTC	3 cut(s)	742, 2180, 2181
BsrDI	GCAATG	2 cut(s)	566, 969
BsrI	ACTGG	5 cut(s)	399, 611, 1612, 1892, 2448
BssECI	CCNNGG	9 cut(s)	209, 293, 719, 788, 1067, 1654, 2191, 2274, 2423
BssNI	GRCGYC	2 cut(s)	1911, 2725
BssT1I	CCWWGG	6 cut(s)	209, 719, 788, 1067, 1654, 2274
Bst2UI	CCWGG	3 cut(s)	1563, 2192, 2722
Bst6I	CTCTTC	5 cut(s)	887, 993, 1345, 1395, 1671
BstACI	GRCGYC	2 cut(s)	1911, 2725
BstAFI	CTTAAG	2 cut(s)	167, 589
BstAPI	GCANNNNNTGC	1 cut(s)	154
BstDSI	CCRYGG	2 cut(s)	293, 2423
BstEII	GGTNACC	1 cut(s)	2231
BstF5I	GGATG	7 cut(s)	232, 808, 1231, 1834, 2221, 2545, 2551
BstFNI	CGCG	1 cut(s)	295
BstMAI	GTCTC	7 cut(s)	72, 180, 379, 742, 1852, 2180, 2181
BstMWI	GCNNNNNNNGC	9 cut(s)	154, 486, 1462, 2327, 2406, 2444, 2710, 2714, 2731
BstNI	CCWGG	3 cut(s)	1563, 2192, 2722
BstPI	GGTNACC	1 cut(s)	2231
BstSCI	CCNGG	3 cut(s)	1561, 2190, 2720
BstSFI	CTRYAG	4 cut(s)	352, 1451, 1818, 1974
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	6 cut(s)	65, 489, 1609, 2421, 2705, 2729
BstV2I	GAAGAC	3 cut(s)	653, 1101, 1190
BstX2I	RGATCY	5 cut(s)	119, 493, 736, 931, 1433
BstXI	CCANNNNNNTGG	1 cut(s)	789
BstYI	RGATCY	5 cut(s)	119, 493, 736, 931, 1433
Bsu36I	CCTNAGG	1 cut(s)	2227
BsuI	GTATCC	1 cut(s)	2318
BsuRI	GGCC	2 cut(s)	667, 1230
BtgI	CCRYGG	2 cut(s)	293, 2423
BtsCI	GGATG	7 cut(s)	232, 808, 1231, 1834, 2221, 2545, 2551
BtsI	GCAGTG	1 cut(s)	1693
BtsIMutI	CAGTG	6 cut(s)	26, 72, 392, 641, 1411, 1693
BveI	ACCTGC	3 cut(s)	47, 359, 1180
CaiI	CAGNNNCTG	2 cut(s)	578, 1436
CciI	TCATGA	1 cut(s)	2083
Cfr13I	GGNCC	4 cut(s)	135, 852, 1826, 2196
Cfr42I	CCGCGG	1 cut(s)	296
CseI	GACGC	3 cut(s)	1559, 1919, 2714
CsiI	ACCWGGT	1 cut(s)	1561
Csp6I	GTAC	3 cut(s)	1691, 1698, 1853
CviAII	CATG	3 cut(s)	1100, 2084, 2612
CviQI	GTAC	3 cut(s)	1691, 1698, 1853
DriI	GACNNNNNGTC	2 cut(s)	1069, 2194
Eam1104I	CTCTTC	5 cut(s)	887, 993, 1345, 1395, 1671
Eam1105I	GACNNNNNGTC	2 cut(s)	1069, 2194
EarI	CTCTTC	5 cut(s)	887, 993, 1345, 1395, 1671
Ecl136II	GAGCTC	2 cut(s)	941, 1428
Eco130I	CCWWGG	6 cut(s)	209, 719, 788, 1067, 1654, 2274
Eco147I	AGGCCT	1 cut(s)	667
Eco24I	GRGCYC	3 cut(s)	943, 1430, 1445
Eco31I	GGTCTC	3 cut(s)	742, 2180, 2181
Eco47I	GGWCC	4 cut(s)	135, 852, 1826, 2196
Eco53kI	GAGCTC	2 cut(s)	941, 1428
Eco57I	CTGAAG	4 cut(s)	665, 1751, 1953, 2154
Eco81I	CCTNAGG	1 cut(s)	2227
Eco91I	GGTNACC	1 cut(s)	2231
EcoICRI	GAGCTC	2 cut(s)	941, 1428
EcoO109I	RGGNCCY	1 cut(s)	852
EcoO65I	GGTNACC	1 cut(s)	2231
EcoRI	GAATTC	2 cut(s)	911, 2125
EcoRII	CCWGG	3 cut(s)	1561, 2190, 2720
EcoT14I	CCWWGG	6 cut(s)	209, 719, 788, 1067, 1654, 2274
EcoT22I	ATGCAT	2 cut(s)	6, 2586
EcoT38I	GRGCYC	3 cut(s)	943, 1430, 1445
ErhI	CCWWGG	6 cut(s)	209, 719, 788, 1067, 1654, 2274
FaeI	CATG	3 cut(s)	1103, 2087, 2615
FalI	AAGNNNNNCTT	4 cut(s)	613, 645, 2384, 2416
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	1099, 2083, 2611
FauI	CCCGC	1 cut(s)	1506
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	2 cut(s)	597, 1161
FblI	GTMKAC	2 cut(s)	502, 529
Fnu4HI	GCNGC	6 cut(s)	54, 478, 1598, 2410, 2694, 2718
FokI	GGATG	7 cut(s)	219, 815, 1238, 1821, 2208, 2552, 2558
FriOI	GRGCYC	3 cut(s)	943, 1430, 1445
Fsp4HI	GCNGC	6 cut(s)	54, 478, 1598, 2410, 2694, 2718
GluI	GCNGC	6 cut(s)	54, 478, 1598, 2410, 2694, 2718
GsuI	CTGGAG	1 cut(s)	1875
HaeIII	GGCC	2 cut(s)	667, 1230
HapII	CCGG	2 cut(s)	2135, 2350
HgaI	GACGC	3 cut(s)	1559, 1919, 2714
Hin1I	GRCGYC	2 cut(s)	1911, 2725
Hin1II	CATG	3 cut(s)	1103, 2087, 2615
HincII	GTYRAC	2 cut(s)	530, 1776
HindII	GTYRAC	2 cut(s)	530, 1776
HindIII	AAGCTT	4 cut(s)	1005, 1463, 2060, 2471
HpaI	GTTAAC	1 cut(s)	1776
HpaII	CCGG	2 cut(s)	2135, 2350
HphI	GGTGA	6 cut(s)	708, 1551, 1934, 2225, 2339, 2699
Hpy166II	GTNNAC	6 cut(s)	503, 530, 1037, 1490, 1691, 1776
Hpy8I	GTNNAC	6 cut(s)	503, 530, 1037, 1490, 1691, 1776
Hpy99I	CGWCG	2 cut(s)	2675, 2730
HpyAV	CCTTC	4 cut(s)	843, 874, 1518, 1726
HpyF10VI	GCNNNNNNNGC	9 cut(s)	154, 486, 1462, 2327, 2406, 2444, 2710, 2714, 2731
Hsp92I	GRCGYC	2 cut(s)	1911, 2725
Hsp92II	CATG	3 cut(s)	1103, 2087, 2615
Kpn2I	TCCGGA	1 cut(s)	2134
Ksp22I	TGATCA	2 cut(s)	597, 1161
KspAI	GTTAAC	1 cut(s)	1776
KspI	CCGCGG	1 cut(s)	296
LguI	GCTCTTC	1 cut(s)	993
LmnI	GCTCC	7 cut(s)	211, 295, 485, 1255, 1355, 2223, 2266
Lsp1109I	GCAGC	6 cut(s)	65, 489, 1609, 2421, 2705, 2729
LweI	GCATC	7 cut(s)	277, 1870, 1918, 2001, 2120, 2356, 2571
MabI	ACCWGGT	1 cut(s)	1561
MaeIII	GTNAC	2 cut(s)	584, 2231
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	5 cut(s)	119, 493, 736, 931, 1433
MhlI	GDGCHC	3 cut(s)	943, 1430, 1445
MlyI	GAGTC	8 cut(s)	74, 138, 182, 428, 535, 1331, 1688, 1729
MmeI	TCCRAC	3 cut(s)	1614, 1767, 2579
Mph1103I	ATGCAT	2 cut(s)	6, 2586
MroI	TCCGGA	1 cut(s)	2134
MroXI	GAANNNNTTC	1 cut(s)	2505
MseI	TTAA	9 cut(s)	168, 590, 899, 945, 1119, 1167, 1775, 2019, 2658
MslI	CAYNNNNRTG	3 cut(s)	721, 1670, 2116
MspA1I	CMGCKG	1 cut(s)	295
MspCI	CTTAAG	2 cut(s)	167, 589
MspI	CCGG	2 cut(s)	2135, 2350
MspR9I	CCNGG	3 cut(s)	1563, 2192, 2722
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	3 cut(s)	1563, 2192, 2722
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	9 cut(s)	154, 486, 1462, 2327, 2406, 2444, 2710, 2714, 2731
NdeI	CATATG	1 cut(s)	247
NheI	GCTAGC	2 cut(s)	2279, 2696
NlaIII	CATG	3 cut(s)	1103, 2087, 2615
NlaIV	GGNNCC	7 cut(s)	424, 495, 854, 1150, 1351, 1970, 2197
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	2231
NsiI	ATGCAT	2 cut(s)	6, 2586
OliI	CACNNNNGTG	1 cut(s)	721
PagI	TCATGA	1 cut(s)	2083
PceI	AGGCCT	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	993
PdmI	GAANNNNTTC	1 cut(s)	2505
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	6 cut(s)	55, 479, 1599, 2411, 2695, 2719
PleI	GAGTC	8 cut(s)	74, 137, 181, 428, 534, 1331, 1687, 1728
PpsI	GAGTC	8 cut(s)	74, 137, 181, 428, 534, 1331, 1687, 1728
PpuMI	RGGWCCY	1 cut(s)	852
PshBI	ATTAAT	1 cut(s)	2019
Psp124BI	GAGCTC	2 cut(s)	943, 1430
Psp5II	RGGWCCY	1 cut(s)	852
Psp6I	CCWGG	3 cut(s)	1561, 2190, 2720
PspEI	GGTNACC	1 cut(s)	2231
PspGI	CCWGG	3 cut(s)	1561, 2190, 2720
PspN4I	GGNNCC	7 cut(s)	424, 495, 854, 1150, 1351, 1970, 2197
PspPI	GGNCC	4 cut(s)	135, 852, 1826, 2196
PspPPI	RGGWCCY	1 cut(s)	852
PstI	CTGCAG	2 cut(s)	356, 1978
PstNI	CAGNNNCTG	2 cut(s)	578, 1436
PsuI	RGATCY	5 cut(s)	119, 493, 736, 931, 1433
RsaI	GTAC	3 cut(s)	1692, 1699, 1854
RsaNI	GTAC	3 cut(s)	1691, 1698, 1853
RseI	CAYNNNNRTG	3 cut(s)	721, 1670, 2116
SacI	GAGCTC	2 cut(s)	943, 1430
SacII	CCGCGG	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	993
SaqAI	TTAA	9 cut(s)	168, 590, 899, 945, 1119, 1167, 1775, 2019, 2658
SatI	GCNGC	6 cut(s)	54, 478, 1598, 2410, 2694, 2718
Sau96I	GGNCC	4 cut(s)	135, 852, 1826, 2196
SchI	GAGTC	8 cut(s)	74, 138, 182, 428, 535, 1331, 1688, 1729
ScrFI	CCNGG	3 cut(s)	1563, 2192, 2722
SduI	GDGCHC	3 cut(s)	943, 1430, 1445
SexAI	ACCWGGT	1 cut(s)	1561
SfaNI	GCATC	7 cut(s)	277, 1870, 1918, 2001, 2120, 2356, 2571
SfcI	CTRYAG	4 cut(s)	352, 1451, 1818, 1974
Sfr303I	CCGCGG	1 cut(s)	296
SgrBI	CCGCGG	1 cut(s)	296
SinI	GGWCC	4 cut(s)	135, 852, 1826, 2196
SmiMI	CAYNNNNRTG	3 cut(s)	721, 1670, 2116
SmlI	CTYRAG	8 cut(s)	167, 436, 589, 843, 1466, 2417, 2477, 2522
SmoI	CTYRAG	8 cut(s)	167, 436, 589, 843, 1466, 2417, 2477, 2522
SseBI	AGGCCT	1 cut(s)	667
SsiI	CCGC	3 cut(s)	293, 295, 1499
SspI	AATATT	1 cut(s)	2160
SstI	GAGCTC	2 cut(s)	943, 1430
StuI	AGGCCT	1 cut(s)	667
StyD4I	CCNGG	3 cut(s)	1561, 2190, 2720
StyI	CCWWGG	6 cut(s)	209, 719, 788, 1067, 1654, 2274
TaqI	TCGA	9 cut(s)	199, 529, 811, 1136, 1185, 2364, 2493, 2670, 2728
TatI	WGTACW	1 cut(s)	1852
Tru1I	TTAA	9 cut(s)	168, 590, 899, 945, 1119, 1167, 1775, 2019, 2658
Tru9I	TTAA	9 cut(s)	168, 590, 899, 945, 1119, 1167, 1775, 2019, 2658
TscAI	CASTG	6 cut(s)	33, 72, 399, 648, 1411, 1693
TseFI	GTSAC	1 cut(s)	2231
TseI	GCWGC	6 cut(s)	53, 477, 1597, 2409, 2693, 2717
Tsp45I	GTSAC	1 cut(s)	2231
TspDTI	ATGAA	8 cut(s)	63, 234, 264, 335, 1197, 1647, 2103, 2391
TspRI	CASTG	6 cut(s)	33, 72, 399, 648, 1411, 1693
Van91I	CCANNNNNTGG	1 cut(s)	116
Vha464I	CTTAAG	2 cut(s)	167, 589
VpaK11BI	GGWCC	4 cut(s)	135, 852, 1826, 2196
VspI	ATTAAT	1 cut(s)	2019
XapI	RAATTY	5 cut(s)	911, 1012, 1414, 2125, 2379
XbaI	TCTAGA	1 cut(s)	1637
XmiI	GTMKAC	2 cut(s)	502, 529
XmnI	GAANNNNTTC	1 cut(s)	2505
Zsp2I	ATGCAT	2 cut(s)	6, 2586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.