Rmu_co8301461.1_g000001

Lactation elevated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8301461.1
OG0007203
Physical Location & Seq
Forward (+)
1 .. 851
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8301461.1_g000001.1.cds

Sequence Viewer

Length: 546 bp
aacaaccaagggaataagcttttccggagatggatgtccaagaaaagacctgagaatgtagaacctggagttgggaaatgggtttcgtacttaaatagagaaaggaagttggattcaattgttggacgtcgtccaattgctcctgcagctccgaaaggactgtatatttatggcaatgttggaagtggaaagacgatgcttatggacatgttctatagtgccactgaaggaatagttaagcatcgaaagagatatcactttcatgaggctatgttgaaaattaatgaacaaatgcatcagatttggaaaaatcaagtggcagataagtctttgcagtccagcattgctaattggataatgagtctacccttcgattcgaaggtcaaggagtgggtggctgcagaagagaactacaaacaacaggttcagatgaaaaacatccttccagctgtggcagataagcttctcctagatcggcaggcagatcaaaagggtggcagcattctttgttttgatgagatacaggtctggttaaatgtgtgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFG1_ATPase

Protein Analysis

181

Amino Acids

20.95

Weight (kDa)

9.64

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 364
AccIII TCCGGA 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 117, 277
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 4 cut(s) 19, 149, 449, 463
AluI AGCT 4 cut(s) 19, 149, 449, 463
Aor13HI TCCGGA 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 146, 398, 498
AseI ATTAAT 1 cut(s) 282
AsuII TTCGAA 1 cut(s) 377
BbvI GCAGC 3 cut(s) 158, 385, 510
BccI CCATC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 66
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 3 cut(s) 144, 214, 399
BisI GCNGC 3 cut(s) 147, 399, 499
BlsI GCNGC 3 cut(s) 148, 400, 500
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 3 cut(s) 186, 250, 304
BpmI CTGGAG 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse3DI GCAATG 2 cut(s) 181, 342
BseAI TCCGGA 1 cut(s) 24
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 2 cut(s) 39, 438
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMI GCAATG 2 cut(s) 181, 342
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 3 cut(s) 158, 385, 510
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 71
BsmI GAATGC 1 cut(s) 501
Bsp119I TTCGAA 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 472, 484
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 24
BspHI TCATGA 1 cut(s) 262
BspMAI CTGCAG 2 cut(s) 148, 403
BspT104I TTCGAA 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 181, 342
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 472, 484
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 39, 438
BstKTI GATC 2 cut(s) 475, 487
BstMBI GATC 2 cut(s) 472, 484
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 3 cut(s) 144, 214, 399
BstV1I GCAGC 3 cut(s) 158, 385, 510
BtsCI GGATG 2 cut(s) 39, 438
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 480
CciI TCATGA 1 cut(s) 262
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 208, 263
CviJI RGCY 6 cut(s) 19, 149, 269, 398, 449, 463
CviKI_1 RGCY 6 cut(s) 19, 149, 269, 398, 449, 463
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 474, 486
DpnII GATC 2 cut(s) 472, 484
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 7
Eco32I GATATC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 2 cut(s) 211, 266
FaiI YATR 7 cut(s) 165, 171, 203, 209, 216, 264, 272
FatI CATG 2 cut(s) 207, 262
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 3 cut(s) 147, 399, 499
FokI GGATG 2 cut(s) 46, 425
Fsp4HI GCNGC 3 cut(s) 147, 399, 499
FspBI CTAG 1 cut(s) 470
GluI GCNGC 3 cut(s) 147, 399, 499
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 2 cut(s) 211, 266
HindIII AAGCTT 2 cut(s) 17, 461
HinfI GANTC 3 cut(s) 113, 361, 374
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 3 cut(s) 153, 300, 429
Hpy188III TCNNGA 2 cut(s) 25, 263
Hpy8I GTNNAC 1 cut(s) 365
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 4 cut(s) 221, 373, 379, 452
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 146, 295, 334, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 2 cut(s) 211, 266
Kpn2I TCCGGA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 472, 484
LmnI GCTCC 2 cut(s) 145, 154
Lsp1109I GCAGC 3 cut(s) 158, 385, 510
LweI GCATC 3 cut(s) 186, 250, 304
MaeI CTAG 1 cut(s) 470
MaeII ACGT 1 cut(s) 127
MalI GATC 2 cut(s) 474, 486
MboI GATC 2 cut(s) 472, 484
MboII GAAGA 1 cut(s) 416
MfeI CAATTG 2 cut(s) 117, 135
MluCI AATT 4 cut(s) 117, 135, 279, 349
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 3 cut(s) 90, 103, 160
MnlI CCTC 1 cut(s) 259
Mph1103I ATGCAT 1 cut(s) 297
MroI TCCGGA 1 cut(s) 24
MseI TTAA 4 cut(s) 92, 237, 282, 533
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 66
MunI CAATTG 2 cut(s) 117, 135
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 2 cut(s) 472, 484
NlaIII CATG 2 cut(s) 211, 266
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 1 cut(s) 211
NspV TTCGAA 1 cut(s) 377
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 207
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 113, 374
PflFI GACNNNGTC 1 cut(s) 129
PkrI GCNGC 3 cut(s) 148, 400, 500
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PscI ACATGT 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PstI CTGCAG 2 cut(s) 148, 403
PsyI GACNNNGTC 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 4 cut(s) 92, 237, 282, 533
SatI GCNGC 3 cut(s) 147, 399, 499
Sau3AI GATC 2 cut(s) 472, 484
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 66
SfaNI GCATC 3 cut(s) 186, 250, 304
SfcI CTRYAG 3 cut(s) 144, 214, 399
SfuI TTCGAA 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 4 cut(s) 117, 135, 279, 349
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 130
TaqI TCGA 3 cut(s) 244, 372, 377
TasI AATT 4 cut(s) 117, 135, 279, 349
TfiI GAWTC 2 cut(s) 113, 374
Tru1I TTAA 4 cut(s) 92, 237, 282, 533
Tru9I TTAA 4 cut(s) 92, 237, 282, 533
TscAI CASTG 1 cut(s) 229
TseI GCWGC 3 cut(s) 146, 398, 498
TspDTI ATGAA 3 cut(s) 251, 300, 446
TspRI CASTG 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 129
VspI ATTAAT 1 cut(s) 282
XceI RCATGY 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 364
XspI CTAG 1 cut(s) 470
ZraI GACGTC 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.