Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022064.1

Orthogroup ID

OG0007203

Physical Location & Seq

Genomic Coordinates Reverse (-)

2066 .. 6516

Gene Structure 4451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022064.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgagaaaagcttcggcaatctcagcgatcctatttgggctcgttcgcggcccaaaatccaagtccagctccaatgcaattcgctgttactgtgatcgaacagtttccaactccagaaagcttccagggccattaacgcagtacaagaggttagttgagcaagggaagctgcaacatgatccgaaccaagaagcggtggcttcgcaattggagaacttgctggggaggttagagcagtatgagagagatatggaggaatatcatacgagcctggcgaattgggagaagaagagagagaatgagcggcggaggattttaatggaggaagctgagagtaagcagaaggatgacatgtggacgtcagtgaacaaccaagggaataagcttttccggagatggatgtccaagaaaagacctgagaatgtagaacctggagttgggaaatgggtttcgtacttaaatagagaaaggaagttggattcaattgttggacgtcgtccaattgctcctgcagctccgaaaggactgtatatttatggcaatgttggaagtggaaagacgatgcttatggacatgttctatagtgccactgaaggaatagttaagcatcgaaagagatatcactttcatgaggctatgttgaaaattaatgaacaaatgcatcagatttggaaaaatcaagtggcagataagtctttgcagtccagcattgctaattggataatgagtctacccttcgattcgaaggtcaaggagtgggtggctgcagaagagaactacaaacaacaggttcagatgaaaaacatccttccagctgtggcagataagcttctcctagatcggcaggcagatcaaaagggtggcagcattctttgttttgatgagatacagactgttgatgtatttgctattgtggccttatctggaattgttagcagattgctaagtactggaactgtttttgtggccaccagtaaccgagcaccaacggacttaaatcaggtttcacgactgattgaaatgcagacacctgtatacttggggggagttcatagtcttcatccttatttccagagacaacgtcaagaatttgaaaatattactgcagaaaacttacagcctcagttgtctttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AFG1_ATPase

Protein Analysis

378

Amino Acids

43.41

Weight (kDa)

9.5

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25530 AT2G25530
fragaria_vesca	FvH4_2g29360
malus_domestica	MD08G1148100.v1.1
prunus_persica	Prupe.1G479100_v2.0.a1 Prupe.1G479100_v2.0.a1 Prupe.1G479100_v2.0.a1 Prupe.1G479100_v2.0.a1 Prupe.1G479100_v2.0.a1
pyrus_communis	pycom08g12470
rosa_chinensis	RchiOBHm_Chr6g0298181
rosa_laevigata	RLG00000011528
rosa_multiflora	Rmu_co8301461.1_g000001 Rmu_sc0007429.1_g000003 Rmu_sc0010099.1_g000014 Rmu_sc0022064.1_g000002
rosa_roxburghii	Rroxscaffold_7G00169890
rosa_rugosa	Rorug06G0279200 Rorug06G0279300 Rorug06G0279400
rosa_samantha	Rh6AG389500 Rh6BG397900 Rh6CG403700 Rh6DG390400
rosa_wichuraiana	Rw6G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	362, 496
AccBSI	CCGCTC	1 cut(s)	304
AccI	GTMKAC	2 cut(s)	730, 1035
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	4 cut(s)	48, 194, 304, 307
AclWI	GGATC	2 cut(s)	22, 173
AcoI	YGGCCR	1 cut(s)	966
AcsI	RAATTY	1 cut(s)	1088
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	2 cut(s)	359, 493
AfaI	GTAC	3 cut(s)	143, 455, 949
AfiI	CCNNNNNNNGG	2 cut(s)	193, 437
AflIII	ACRYGT	2 cut(s)	351, 573
AgsI	TTSAA	4 cut(s)	483, 643, 1019, 1094
AjnI	CCWGG	3 cut(s)	124, 270, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	9 cut(s)	11, 69, 121, 169, 329, 385, 515, 815, 829
AluI	AGCT	9 cut(s)	11, 69, 121, 169, 329, 385, 515, 815, 829
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	1 cut(s)	1069
AlwI	GGATC	2 cut(s)	22, 173
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	4 cut(s)	49, 128, 915, 966
ApeKI	GCWGC	4 cut(s)	169, 512, 764, 864
ApoI	RAATTY	1 cut(s)	1088
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AseI	ATTAAT	1 cut(s)	648
Asp700I	GAANNNNTTC	2 cut(s)	10, 103
AspS9I	GGNCC	2 cut(s)	50, 128
AsuII	TTCGAA	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	968
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	1049
Bbv12I	GWGCWC	1 cut(s)	985
BbvI	GCAGC	4 cut(s)	156, 524, 751, 876
BccI	CCATC	1 cut(s)	390
BciT130I	CCWGG	3 cut(s)	126, 272, 432
BcoDI	GTCTC	1 cut(s)	1069
BfaI	CTAG	1 cut(s)	836
BfmI	CTRYAG	4 cut(s)	510, 580, 765, 1104
BisI	GCNGC	6 cut(s)	49, 170, 305, 513, 765, 865
BlsI	GCNGC	6 cut(s)	50, 171, 306, 514, 766, 866
BmcAI	AGTACT	1 cut(s)	949
Bme1390I	CCNGG	3 cut(s)	126, 272, 432
BmgT120I	GGNCC	2 cut(s)	50, 128
BmrFI	CCNGG	3 cut(s)	126, 272, 432
BmsI	GCATC	3 cut(s)	552, 616, 670
BpiI	GAAGAC	1 cut(s)	1049
BpmI	CTGGAG	2 cut(s)	97, 453
Bpu14I	TTCGAA	1 cut(s)	743
BsaHI	GRCGYC	2 cut(s)	359, 493
BsaJI	CCNNGG	2 cut(s)	125, 373
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 437
Bse1I	ACTGG	2 cut(s)	955, 972
Bse3DI	GCAATG	2 cut(s)	547, 708
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	3 cut(s)	126, 272, 432
BseDI	CCNNGG	2 cut(s)	125, 373
BseGI	GGATG	4 cut(s)	352, 405, 804, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	193, 437
BseMI	GCAATG	2 cut(s)	547, 708
BseMII	CTCAG	4 cut(s)	36, 321, 408, 1136
BseNI	ACTGG	2 cut(s)	955, 972
BseXI	GCAGC	4 cut(s)	156, 524, 751, 876
BseYI	CCCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	4 cut(s)	51, 130, 917, 968
BsiHKAI	GWGCWC	1 cut(s)	985
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	2 cut(s)	193, 437
BsmAI	GTCTC	1 cut(s)	1069
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	4 cut(s)	51, 130, 917, 968
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	42, 985
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	27, 94, 178, 838, 850
BspACI	CCGC	4 cut(s)	48, 194, 304, 307
BspANI	GGCC	4 cut(s)	51, 130, 917, 968
BspCNI	CTCAG	4 cut(s)	35, 322, 409, 1135
BspEI	TCCGGA	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	628
BspMAI	CTGCAG	3 cut(s)	514, 769, 1108
BspPI	GGATC	2 cut(s)	22, 173
BspT104I	TTCGAA	1 cut(s)	743
BsrBI	CCGCTC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	547, 708
BsrI	ACTGG	2 cut(s)	955, 972
BssECI	CCNNGG	2 cut(s)	125, 373
BssMI	GATC	5 cut(s)	27, 94, 178, 838, 850
BssNAI	GTATAC	1 cut(s)	1036
BssNI	GRCGYC	2 cut(s)	359, 493
BssT1I	CCWWGG	1 cut(s)	373
Bst1107I	GTATAC	1 cut(s)	1036
Bst2UI	CCWGG	3 cut(s)	126, 272, 432
Bst4CI	ACNGT	5 cut(s)	92, 103, 528, 895, 958
Bst6I	CTCTTC	2 cut(s)	284, 765
BstACI	GRCGYC	2 cut(s)	359, 493
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	5 cut(s)	22, 330, 417, 944, 1122
BstF5I	GGATG	4 cut(s)	352, 405, 804, 1060
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	5 cut(s)	30, 97, 181, 841, 853
BstMAI	GTCTC	1 cut(s)	1069
BstMBI	GATC	5 cut(s)	27, 94, 178, 838, 850
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 127, 136, 166, 512, 914
BstNI	CCWGG	3 cut(s)	126, 272, 432
BstNSI	RCATGY	2 cut(s)	355, 577
BstSCI	CCNGG	3 cut(s)	124, 270, 430
BstSFI	CTRYAG	4 cut(s)	510, 580, 765, 1104
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	156, 524, 751, 876
BstV2I	GAAGAC	1 cut(s)	1049
BstZ17I	GTATAC	1 cut(s)	1036
BsuRI	GGCC	4 cut(s)	51, 130, 917, 968
BtsCI	GGATG	4 cut(s)	352, 405, 804, 1060
BtsIMutI	CAGTG	2 cut(s)	369, 588
Cac8I	GCNNGC	1 cut(s)	846
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	50, 128
Csp6I	GTAC	3 cut(s)	142, 454, 948
CviAII	CATG	4 cut(s)	176, 352, 574, 629
CviQI	GTAC	3 cut(s)	142, 454, 948
DdeI	CTNAG	5 cut(s)	22, 330, 417, 944, 1122
DpnI	GATC	5 cut(s)	29, 96, 180, 840, 852
DpnII	GATC	5 cut(s)	27, 94, 178, 838, 850
EaeI	YGGCCR	1 cut(s)	966
Eam1104I	CTCTTC	2 cut(s)	284, 765
EarI	CTCTTC	2 cut(s)	284, 765
EciI	GGCGGA	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	612
EcoRII	CCWGG	3 cut(s)	124, 270, 430
EcoRV	GATATC	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	373
EcoT22I	ATGCAT	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	4 cut(s)	179, 355, 577, 632
FatI	CATG	4 cut(s)	175, 351, 573, 628
FblI	GTMKAC	2 cut(s)	730, 1035
Fnu4HI	GCNGC	6 cut(s)	49, 170, 305, 513, 765, 865
FokI	GGATG	4 cut(s)	359, 412, 791, 1047
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	6 cut(s)	49, 170, 305, 513, 765, 865
FspBI	CTAG	1 cut(s)	836
GluI	GCNGC	6 cut(s)	49, 170, 305, 513, 765, 865
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	2 cut(s)	97, 453
HaeIII	GGCC	4 cut(s)	51, 130, 917, 968
HapII	CCGG	1 cut(s)	391
Hin1I	GRCGYC	2 cut(s)	359, 493
Hin1II	CATG	4 cut(s)	179, 355, 577, 632
HindIII	AAGCTT	4 cut(s)	9, 119, 383, 827
HinfI	GANTC	3 cut(s)	479, 727, 740
HpaII	CCGG	1 cut(s)	391
Hpy166II	GTNNAC	4 cut(s)	357, 367, 731, 1036
Hpy188I	TCNGA	4 cut(s)	183, 519, 666, 795
Hpy188III	TCNNGA	7 cut(s)	114, 391, 629, 924, 1008, 1072, 1085
Hpy8I	GTNNAC	4 cut(s)	357, 367, 731, 1036
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	5 cut(s)	337, 587, 739, 745, 818
HpyCH4III	ACNGT	5 cut(s)	92, 103, 528, 895, 958
HpyCH4IV	ACGT	3 cut(s)	359, 493, 1081
HpyCH4V	TGCA	8 cut(s)	77, 172, 512, 661, 700, 767, 1024, 1106
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 127, 136, 166, 512, 914
HpyF3I	CTNAG	5 cut(s)	22, 330, 417, 944, 1122
HpySE526I	ACGT	3 cut(s)	359, 493, 1081
Hsp92I	GRCGYC	2 cut(s)	359, 493
Hsp92II	CATG	4 cut(s)	179, 355, 577, 632
Kpn2I	TCCGGA	1 cut(s)	390
Kzo9I	GATC	5 cut(s)	27, 94, 178, 838, 850
LmnI	GCTCC	3 cut(s)	74, 511, 520
Lsp1109I	GCAGC	4 cut(s)	156, 524, 751, 876
LweI	GCATC	3 cut(s)	552, 616, 670
MaeI	CTAG	1 cut(s)	836
MaeII	ACGT	3 cut(s)	359, 493, 1081
MaeIII	GTNAC	2 cut(s)	86, 974
MalI	GATC	5 cut(s)	29, 96, 180, 840, 852
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	5 cut(s)	27, 94, 178, 838, 850
MboII	GAAGA	4 cut(s)	298, 301, 782, 1049
MfeI	CAATTG	3 cut(s)	206, 483, 501
MhlI	GDGCHC	2 cut(s)	42, 985
MlsI	TGGCCA	1 cut(s)	968
MluCI	AATT	9 cut(s)	78, 206, 277, 483, 501, 645, 715, 927, 1088
MluNI	TGGCCA	1 cut(s)	968
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	4 cut(s)	132, 456, 469, 526
MnlI	CCTC	7 cut(s)	141, 219, 247, 303, 316, 625, 1131
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	1 cut(s)	663
MroI	TCCGGA	1 cut(s)	390
MroXI	GAANNNNTTC	2 cut(s)	10, 103
MscI	TGGCCA	1 cut(s)	968
MseI	TTAA	6 cut(s)	134, 317, 458, 603, 648, 995
MslI	CAYNNNNRTG	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	968
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	3 cut(s)	126, 272, 432
MunI	CAATTG	3 cut(s)	206, 483, 501
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	3 cut(s)	126, 272, 432
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	6 cut(s)	23, 127, 136, 166, 512, 914
NdeII	GATC	5 cut(s)	27, 94, 178, 838, 850
NlaIII	CATG	4 cut(s)	179, 355, 577, 632
NsiI	ATGCAT	1 cut(s)	663
NspI	RCATGY	2 cut(s)	355, 577
NspV	TTCGAA	1 cut(s)	743
PagI	TCATGA	1 cut(s)	628
PciI	ACATGT	2 cut(s)	351, 573
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PctI	GAATGC	1 cut(s)	867
PdmI	GAANNNNTTC	2 cut(s)	10, 103
PfeI	GAWTC	2 cut(s)	479, 740
PflFI	GACNNNGTC	2 cut(s)	495, 1080
PkrI	GCNGC	6 cut(s)	50, 171, 306, 514, 766, 866
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PscI	ACATGT	2 cut(s)	351, 573
PshBI	ATTAAT	1 cut(s)	648
Psp6I	CCWGG	3 cut(s)	124, 270, 430
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	3 cut(s)	124, 270, 430
PspPI	GGNCC	2 cut(s)	50, 128
PstI	CTGCAG	3 cut(s)	514, 769, 1108
PsyI	GACNNNGTC	2 cut(s)	495, 1080
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	3 cut(s)	143, 455, 949
RsaNI	GTAC	3 cut(s)	142, 454, 948
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	6 cut(s)	134, 317, 458, 603, 648, 995
SatI	GCNGC	6 cut(s)	49, 170, 305, 513, 765, 865
Sau3AI	GATC	5 cut(s)	27, 94, 178, 838, 850
Sau96I	GGNCC	2 cut(s)	50, 128
ScaI	AGTACT	1 cut(s)	949
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	3 cut(s)	126, 272, 432
SduI	GDGCHC	2 cut(s)	42, 985
SfaNI	GCATC	3 cut(s)	552, 616, 670
SfcI	CTRYAG	4 cut(s)	510, 580, 765, 1104
SfuI	TTCGAA	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	627
Sse9I	AATT	9 cut(s)	78, 206, 277, 483, 501, 645, 715, 927, 1088
SsiI	CCGC	4 cut(s)	48, 194, 304, 307
SspI	AATATT	1 cut(s)	1099
SspMI	CTAG	1 cut(s)	836
StyD4I	CCNGG	3 cut(s)	124, 270, 430
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	5 cut(s)	92, 103, 528, 895, 958
TaiI	ACGT	3 cut(s)	362, 496, 1084
TaqI	TCGA	4 cut(s)	97, 610, 738, 743
TasI	AATT	9 cut(s)	78, 206, 277, 483, 501, 645, 715, 927, 1088
TatI	WGTACW	2 cut(s)	141, 947
TauI	GCSGC	2 cut(s)	51, 307
TfiI	GAWTC	2 cut(s)	479, 740
Tru1I	TTAA	6 cut(s)	134, 317, 458, 603, 648, 995
Tru9I	TTAA	6 cut(s)	134, 317, 458, 603, 648, 995
TscAI	CASTG	2 cut(s)	369, 595
TseI	GCWGC	4 cut(s)	169, 512, 764, 864
TspDTI	ATGAA	5 cut(s)	617, 666, 812, 1040, 1049
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	2 cut(s)	369, 595
Tth111I	GACNNNGTC	2 cut(s)	495, 1080
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	1088
XceI	RCATGY	2 cut(s)	355, 577
XmiI	GTMKAC	2 cut(s)	730, 1035
XmnI	GAANNNNTTC	2 cut(s)	10, 103
XspI	CTAG	1 cut(s)	836
ZraI	GACGTC	2 cut(s)	360, 494
ZrmI	AGTACT	1 cut(s)	949
Zsp2I	ATGCAT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.