Rorug06G0279300

Lactation elevated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007203
Physical Location & Seq
Reverse (-)
42656383 .. 42658421
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0279300.1

Sequence Viewer

Length: 732 bp
ATGGCGTCGTTTATGAGTTTCTTTACTGCTTTCTTGTTGCTTCAGGTAACAATTCGAATAAATATGTTGTGCATTCTGAAGGGTACTGTATGTGCCCTGTATGAAGTCTGTGCGAAGCAGAGTGATGGGGTAGTTCTGAATTGCCCTTACGGTTCTCCTTCTGTGAAGGTTAGTGGCAATATGACTGTGGCTGGGATTGACTATTACATAAGTGACACTTTTGGACAAGGACTACCCAACTCCTGCAAGGATGTTAAATTCCGATCCGTAGACTTGGTTGGTGCCGGTGCTAAAAGTTTTGAAGAATGGTTTGATTTTCTTGGAAAGAAAGCATCCCCTGCTGTCCCTGCTTCACCTTATGCCATTGACTTCAAGTTTCTGACTCGTGAATCATCCGAAATGCAGTTCATGAACATGTCAGCTTATTCATGTGCTGACACTTCATTAGGCTACTCTTGTGATGATTGCCCTAACGCGTGTTCTAGTTCTGAAGCGATGCTACTCTCCATCAAACTCTGGCCTGTTGAGGTGAGAATCAATGTTACACGTATACTTGCCACATTCATGGCAGTTTTATGGGATTGTAGTCAGTTGGCTTGGGGGATGGCTAATCTTATGGGGATATGCAGTTTGTGGATGGTGACTGTTCTTTGGGGCATTATCTGGAATTTCAAGTTCTTGCTAGGTCTTGCTATTGGTTATCAACATCCTGAATTACGTTTGTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFG1_ATPase

Protein Analysis

243

Amino Acids

26.89

Weight (kDa)

5.42

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPC1_N PF16414 59 - 164 2.2e-19 Niemann-Pick C1 N terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 2 cut(s) 270, 550
AccII CGCG 1 cut(s) 476
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 2 cut(s) 257, 667
AcuI CTGAAG 3 cut(s) 26, 98, 510
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 85
AflIII ACRYGT 3 cut(s) 414, 474, 545
AgsI TTSAA 3 cut(s) 302, 373, 673
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
AlwI GGATC 1 cut(s) 258
AoxI GGCC 1 cut(s) 518
ApoI RAATTY 2 cut(s) 257, 667
AsuHPI GGTGA 3 cut(s) 345, 541, 652
AsuII TTCGAA 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 281
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BauI CACGAG 1 cut(s) 384
BccI CCATC 4 cut(s) 119, 515, 598, 631
BfaI CTAG 2 cut(s) 483, 683
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 2 cut(s) 341, 486
Bpu14I TTCGAA 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 548
BsaHI GRCGYC 1 cut(s) 5
Bse118I RCCGGY 1 cut(s) 284
BseGI GGATG 6 cut(s) 256, 332, 392, 609, 642, 706
BseSI GKGCMC 1 cut(s) 97
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 1 cut(s) 520
BshNI GGYRCC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 1 cut(s) 520
Bsp119I TTCGAA 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 263
BspANI GGCC 1 cut(s) 520
BspFNI CGCG 1 cut(s) 476
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 283
BspPI GGATC 1 cut(s) 258
BspT104I TTCGAA 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssMI GATC 1 cut(s) 263
BssNAI GTATAC 1 cut(s) 551
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 384
Bst1107I GTATAC 1 cut(s) 551
Bst2BI CACGAG 1 cut(s) 384
Bst4CI ACNGT 4 cut(s) 88, 152, 187, 646
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 548
BstBI TTCGAA 1 cut(s) 55
BstF5I GGATG 6 cut(s) 256, 332, 392, 609, 642, 706
BstFNI CGCG 1 cut(s) 476
BstKTI GATC 1 cut(s) 266
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 2 cut(s) 338, 347
BstNSI RCATGY 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 97
BstUI CGCG 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 565
BstZ17I GTATAC 1 cut(s) 551
BsuRI GGCC 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 509
BtsCI GGATG 6 cut(s) 256, 332, 392, 609, 642, 706
CciI TCATGA 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 284
Csp6I GTAC 1 cut(s) 84
CviAII CATG 4 cut(s) 409, 415, 429, 565
CviJI RGCY 6 cut(s) 191, 422, 450, 520, 596, 608
CviKI_1 RGCY 6 cut(s) 191, 422, 450, 520, 596, 608
CviQI GTAC 1 cut(s) 84
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
Eco57I CTGAAG 3 cut(s) 26, 98, 510
FaeI CATG 4 cut(s) 412, 418, 432, 568
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FaqI GGGAC 1 cut(s) 329
FatI CATG 4 cut(s) 408, 414, 428, 564
FblI GTMKAC 2 cut(s) 270, 550
FokI GGATG 6 cut(s) 263, 319, 379, 616, 649, 693
FspBI CTAG 2 cut(s) 483, 683
GsaI CCCAGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 520
HapII CCGG 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 412, 418, 432, 568
HinfI GANTC 3 cut(s) 382, 389, 534
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 345, 541, 652
Hpy166II GTNNAC 2 cut(s) 271, 551
Hpy188I TCNGA 6 cut(s) 78, 138, 263, 381, 397, 490
Hpy188III TCNNGA 4 cut(s) 386, 409, 664, 710
Hpy8I GTNNAC 2 cut(s) 271, 551
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 73, 160, 168
HpyCH4III ACNGT 4 cut(s) 88, 152, 187, 646
HpyCH4IV ACGT 2 cut(s) 547, 718
HpyCH4V TGCA 4 cut(s) 72, 246, 403, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 347
HpySE526I ACGT 2 cut(s) 547, 718
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 412, 418, 432, 568
Kzo9I GATC 1 cut(s) 263
LweI GCATC 2 cut(s) 341, 486
MaeI CTAG 2 cut(s) 483, 683
MaeII ACGT 2 cut(s) 547, 718
MaeIII GTNAC 4 cut(s) 46, 212, 541, 640
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 5 cut(s) 51, 139, 257, 667, 713
MluI ACGCGT 1 cut(s) 474
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 1 cut(s) 520
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 2 cut(s) 413, 563
MspI CCGG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 72
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 2 cut(s) 338, 347
NdeII GATC 1 cut(s) 263
NlaIII CATG 4 cut(s) 412, 418, 432, 568
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 2 cut(s) 212, 640
NspI RCATGY 1 cut(s) 418
NspV TTCGAA 1 cut(s) 55
PagI TCATGA 1 cut(s) 408
PciI ACATGT 1 cut(s) 414
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 389, 534
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 548
PscI ACATGT 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 283
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 2 cut(s) 413, 563
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 1 cut(s) 263
SchI GAGTC 1 cut(s) 376
SduI GDGCHC 1 cut(s) 97
SetI ASST 8 cut(s) 48, 171, 358, 424, 531, 550, 688, 721
SfaNI GCATC 2 cut(s) 341, 486
SfuI TTCGAA 1 cut(s) 55
SmiMI CAYNNNNRTG 2 cut(s) 413, 563
Sse9I AATT 5 cut(s) 51, 139, 257, 667, 713
SspMI CTAG 2 cut(s) 483, 683
TaaI ACNGT 4 cut(s) 88, 152, 187, 646
TaiI ACGT 2 cut(s) 550, 721
TaqI TCGA 1 cut(s) 55
TasI AATT 5 cut(s) 51, 139, 257, 667, 713
TfiI GAWTC 2 cut(s) 389, 534
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 2 cut(s) 212, 640
Tsp45I GTSAC 2 cut(s) 212, 640
TspDTI ATGAA 6 cut(s) 117, 397, 417, 425, 432, 553
TspGWI ACGGA 1 cut(s) 256
XapI RAATTY 2 cut(s) 257, 667
XceI RCATGY 1 cut(s) 418
XmiI GTMKAC 2 cut(s) 270, 550
XspI CTAG 2 cut(s) 483, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.