Rorug06G0279200

Lactation elevated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007203
Physical Location & Seq
Forward (+)
42652236 .. 42653815
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0279200.1

Sequence Viewer

Length: 621 bp
ATGGTATCGGGGTCAGGAATATGCGCGAAGAAGGTGGTGGTGGACGCTCGGCATCACATGCTGGGGCGATTGGCGTCGATCGTGGCGAAGGAGCTTCTCAACGGGCAGAAGGTGGTGGTTGTCCGCTGCGAGGAGATTGCCATCTCCGGCGGCCTCGTCCGGCAGAAGATGAAGTACATGCGGTTCCTCCGTAAGCGCATGAACACCAAGCCCTCCCACGGCCCCATCCACTTCCGCGCTCCCGCCAAAATCTTCTGGCGAACCGTCCGAGGGATGATTCCGCATAAGACTAAGCGCGGAGCTAATGCACTTGCTCGGTTGAAGGCTTACGAGGGAGTCCCACCCCCCTTTGATAAGATGAAGAGGATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAGTGGTCACAAGTACTGCTTGCTGGGTAAGCTGTCGTCCGAGGTTGGATGGAACCACTATGATACCATCAGGGAGCTAGAAAAGAAGCGAAAAGAGAGGTCTCAGTTGGCTTACGAGAGGAAGAAGCAGCTAAACAAACTCAAGGTGAAGGTTGAAAAGGCTGCGGAGGAGAAGCTTGGCGCCCAGCTTGAAATCATTGCTCCTGTTAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFG1_ATPase

Protein Analysis

206

Amino Acids

23.52

Weight (kDa)

10.42

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13 PF00572 10 - 115 2.1e-23 Ribosomal protein L13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 584
AccII CGCG 3 cut(s) 26, 237, 297
AciI CCGC 8 cut(s) 124, 150, 181, 235, 243, 281, 297, 569
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 2 cut(s) 74, 585
AfaI GTAC 3 cut(s) 176, 419, 617
AfiI CCNNNNNNNGG 3 cut(s) 130, 218, 270
AgsI TTSAA 3 cut(s) 322, 560, 596
AluBI AGCT 7 cut(s) 94, 302, 436, 481, 535, 580, 592
AluI AGCT 7 cut(s) 94, 302, 436, 481, 535, 580, 592
Alw26I GTCTC 1 cut(s) 510
AoxI GGCC 2 cut(s) 151, 220
ApeKI GCWGC 3 cut(s) 126, 532, 566
AspLEI GCGC 5 cut(s) 26, 198, 239, 297, 587
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 562
BanI GGYRCC 1 cut(s) 584
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BbvI GCAGC 3 cut(s) 113, 544, 553
BccI CCATC 5 cut(s) 149, 233, 361, 447, 479
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 588
BisI GCNGC 4 cut(s) 127, 151, 533, 567
BlsI GCNGC 4 cut(s) 128, 152, 534, 568
BmcAI AGTACT 2 cut(s) 419, 617
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 4 cut(s) 185, 223, 458, 586
BmsI GCATC 2 cut(s) 61, 370
BpuEI CTTGAG 2 cut(s) 371, 530
BsaBI GATNNNNATC 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 74, 585
BsaI GGTCTC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 217, 268, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 218, 270
Bse3DI GCAATG 1 cut(s) 600
Bse8I GATNNNNATC 1 cut(s) 140
BseDI CCNNGG 3 cut(s) 217, 268, 444
BseGI GGATG 4 cut(s) 225, 279, 372, 458
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 3 cut(s) 130, 218, 270
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 146, 587
BseXI GCAGC 3 cut(s) 113, 544, 553
BseYI CCCAGC 3 cut(s) 61, 427, 588
Bsh1236I CGCG 3 cut(s) 26, 237, 297
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 2 cut(s) 153, 222
BshNI GGYRCC 1 cut(s) 584
BsiEI CGRYCG 1 cut(s) 81
BsiSI CCGG 2 cut(s) 147, 160
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 130, 218, 270
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 2 cut(s) 153, 222
Bso31I GGTCTC 1 cut(s) 510
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 8 cut(s) 124, 150, 181, 235, 243, 281, 297, 569
BspANI GGCC 2 cut(s) 153, 222
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 3 cut(s) 26, 237, 297
BspLI GGNNCC 4 cut(s) 185, 223, 458, 586
BspT107I GGYRCC 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 510
BsrDI GCAATG 1 cut(s) 600
BssECI CCNNGG 3 cut(s) 217, 268, 444
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 2 cut(s) 74, 585
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 2 cut(s) 74, 585
BstAPI GCANNNNNTGC 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 2 cut(s) 291, 507
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 4 cut(s) 225, 279, 372, 458
BstFNI CGCG 3 cut(s) 26, 237, 297
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 5 cut(s) 26, 198, 239, 297, 587
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 1 cut(s) 78
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 58, 433
BstNSI RCATGY 2 cut(s) 61, 181
BstUI CGCG 3 cut(s) 26, 237, 297
BstV1I GCAGC 3 cut(s) 113, 544, 553
BsuRI GGCC 2 cut(s) 153, 222
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 4 cut(s) 225, 279, 372, 458
Cac8I GCNNGC 1 cut(s) 425
CfoI GCGC 5 cut(s) 26, 198, 239, 297, 587
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 2 cut(s) 53, 63
Csp6I GTAC 3 cut(s) 175, 418, 616
CviAII CATG 3 cut(s) 58, 178, 199
CviQI GTAC 3 cut(s) 175, 418, 616
DdeI CTNAG 2 cut(s) 291, 507
DinI GGCGCC 1 cut(s) 586
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 386
EgeI GGCGCC 1 cut(s) 586
EheI GGCGCC 1 cut(s) 586
FaeI CATG 3 cut(s) 61, 181, 202
FaiI YATR 6 cut(s) 22, 59, 179, 200, 285, 465
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 57, 177, 198
FauI CCCGC 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 127, 151, 533, 567
FokI GGATG 4 cut(s) 212, 286, 379, 465
Fsp4HI GCNGC 4 cut(s) 127, 151, 533, 567
FspBI CTAG 1 cut(s) 482
GlaI GCGC 5 cut(s) 25, 197, 238, 296, 586
GluI GCNGC 4 cut(s) 127, 151, 533, 567
GsaI CCCAGC 3 cut(s) 65, 431, 592
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 2 cut(s) 153, 222
HapII CCGG 2 cut(s) 147, 160
HgaI GACGC 2 cut(s) 53, 63
HhaI GCGC 5 cut(s) 26, 198, 239, 297, 587
Hin1I GRCGYC 2 cut(s) 74, 585
Hin1II CATG 3 cut(s) 61, 181, 202
Hin6I GCGC 5 cut(s) 24, 196, 237, 295, 585
HinP1I GCGC 5 cut(s) 24, 196, 237, 295, 585
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 2 cut(s) 277, 336
HpaII CCGG 2 cut(s) 147, 160
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 269, 405, 445
Hpy188III TCNNGA 2 cut(s) 15, 377
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 5 cut(s) 25, 82, 103, 316, 547
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 433
HpyF3I CTNAG 2 cut(s) 291, 507
Hsp92I GRCGYC 2 cut(s) 74, 585
Hsp92II CATG 3 cut(s) 61, 181, 202
HspAI GCGC 5 cut(s) 24, 196, 237, 295, 585
KasI GGCGCC 1 cut(s) 584
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 5 cut(s) 91, 244, 299, 478, 610
LpnPI CCDG 8 cut(s) 47, 160, 173, 241, 390, 413, 460, 602
Lsp1109I GCAGC 3 cut(s) 113, 544, 553
LweI GCATC 2 cut(s) 61, 370
MaeI CTAG 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 5 cut(s) 40, 178, 244, 373, 538
Mly113I GGCGCC 1 cut(s) 585
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 430
MseI TTAA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 2 cut(s) 147, 160
MvnI CGCG 3 cut(s) 26, 237, 297
MwoI GCNNNNNNNGC 2 cut(s) 58, 433
NarI GGCGCC 1 cut(s) 585
NdeII GATC 1 cut(s) 78
NlaIII CATG 3 cut(s) 61, 181, 202
NlaIV GGNNCC 4 cut(s) 185, 223, 458, 586
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 2 cut(s) 61, 181
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 4 cut(s) 128, 152, 534, 568
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 1 cut(s) 344
PluTI GGCGCC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 344
PspFI CCCAGC 3 cut(s) 61, 427, 588
PspN4I GGNNCC 4 cut(s) 185, 223, 458, 586
PspPI GGNCC 1 cut(s) 221
PsrI GAACNNNNNNTAC 2 cut(s) 167, 199
PvuI CGATCG 1 cut(s) 81
RsaI GTAC 3 cut(s) 176, 419, 617
RsaNI GTAC 3 cut(s) 175, 418, 616
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 4 cut(s) 127, 151, 533, 567
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 221
ScaI AGTACT 2 cut(s) 419, 617
SchI GAGTC 1 cut(s) 345
SfaNI GCATC 2 cut(s) 61, 370
SfoI GGCGCC 1 cut(s) 586
SmlI CTYRAG 2 cut(s) 386, 545
SmoI CTYRAG 2 cut(s) 386, 545
SsiI CCGC 8 cut(s) 124, 150, 181, 235, 243, 281, 297, 569
SspDI GGCGCC 1 cut(s) 584
SspMI CTAG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 77
TatI WGTACW 3 cut(s) 174, 417, 615
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 3 cut(s) 126, 532, 566
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 185, 215, 374
TspGWI ACGGA 1 cut(s) 179
XceI RCATGY 2 cut(s) 61, 181
XspI CTAG 1 cut(s) 482
ZrmI AGTACT 2 cut(s) 419, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.