Rorug06G0279400

Lactation elevated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007203
Physical Location & Seq
Forward (+)
42681485 .. 42683325
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0279400.1

Sequence Viewer

Length: 423 bp
ATGGGCGGGGAGAAAAAGTTCTACACTTTGGACGAGGTCTCCAAGCACAGCGACCGCAAAGACTGCTGGCTCGTCATTGATGGCAAGGTGTATGATGTGACAAAATTTTTGGAGGACCATCCTGGTGGTGATGAGGTCTTATTGTCATCCACAGGGAAGGATGCAACTGATGATTTTGAGGATGTTGGTCACAGTACTGCAGCTAGAGCAATGATGGATGAGTACTATGTAGGAGACATTGATAAAGCATTCATCACAGCTAAGTCGACAAAGTACACTCCTCCCAAGCAGCCTCAGTACAATCCGGACAAAACAACCGATTTCATGATCAGACTCCTCCAGTTCCTTGTTCCCCTGCTCATTTTGGGTTTGGCTTTCGTTGTGCGCGCTCCTATACCAAATCACCAACAGCCTAAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFG1_ATPase

Protein Analysis

140

Amino Acids

15.79

Weight (kDa)

5.28

Isoelectric Point (pI)

26.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyt-b5 PF00173 9 - 80 1.3e-30 Cytochrome b5-like Heme/Steroid binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 266
AccII CGCG 1 cut(s) 387
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 2 cut(s) 6, 55
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 4 cut(s) 196, 224, 275, 299
AjnI CCWGG 1 cut(s) 121
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 2 cut(s) 203, 260
AluI AGCT 2 cut(s) 203, 260
Alw26I GTCTC 2 cut(s) 43, 228
Aor13HI TCCGGA 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 200, 289
ApoI RAATTY 1 cut(s) 104
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 2 cut(s) 387, 389
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 2 cut(s) 140, 395
AvaII GGWCC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 212, 301
BccI CCATC 3 cut(s) 74, 126, 208
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 43, 228
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 201, 290
BlsI GCNGC 2 cut(s) 202, 291
BmcAI AGTACT 2 cut(s) 196, 224
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 3 cut(s) 23, 32, 53
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 1 cut(s) 123
BseGI GGATG 5 cut(s) 118, 146, 166, 187, 223
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 340
BsePI GCGCGC 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 270, 326
BseXI GCAGC 2 cut(s) 212, 301
Bsh1236I CGCG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 55
BsiSI CCGG 1 cut(s) 305
BsmAI GTCTC 2 cut(s) 43, 228
BsmI GAATGC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 43
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 1 cut(s) 327
BspACI CCGC 2 cut(s) 6, 55
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 1 cut(s) 387
BspHI TCATGA 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 340
BssHII GCGCGC 1 cut(s) 385
BssMI GATC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 68, 387
BstDEI CTNAG 2 cut(s) 261, 294
BstF5I GGATG 5 cut(s) 118, 146, 166, 187, 223
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 2 cut(s) 387, 389
BstKTI GATC 1 cut(s) 330
BstMAI GTCTC 2 cut(s) 43, 228
BstMBI GATC 1 cut(s) 327
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 63, 206
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 212, 301
BstXI CCANNNNNNTGG 1 cut(s) 125
BtsCI GGATG 5 cut(s) 118, 146, 166, 187, 223
Cac8I GCNNGC 2 cut(s) 68, 387
CciI TCATGA 1 cut(s) 324
CfoI GCGC 2 cut(s) 387, 389
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 4 cut(s) 195, 223, 274, 298
CviAII CATG 1 cut(s) 325
CviJI RGCY 6 cut(s) 70, 203, 260, 292, 374, 412
CviKI_1 RGCY 6 cut(s) 70, 203, 260, 292, 374, 412
CviQI GTAC 4 cut(s) 195, 223, 274, 298
DdeI CTNAG 2 cut(s) 261, 294
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 328
FaiI YATR 4 cut(s) 93, 228, 326, 395
FatI CATG 1 cut(s) 324
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 201, 290
FokI GGATG 5 cut(s) 105, 133, 173, 194, 230
Fsp4HI GCNGC 2 cut(s) 201, 290
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 386, 388
GluI GCNGC 2 cut(s) 201, 290
GsuI CTGGAG 1 cut(s) 323
HapII CCGG 1 cut(s) 305
HhaI GCGC 2 cut(s) 387, 389
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 2 cut(s) 385, 387
HinP1I GCGC 2 cut(s) 385, 387
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 1 cut(s) 333
HpaII CCGG 1 cut(s) 305
HphI GGTGA 2 cut(s) 140, 395
Hpy166II GTNNAC 2 cut(s) 267, 276
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 2 cut(s) 305, 325
Hpy8I GTNNAC 2 cut(s) 267, 276
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 164, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 206
HpyF3I CTNAG 2 cut(s) 261, 294
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 2 cut(s) 385, 387
Kpn2I TCCGGA 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 7 cut(s) 52, 108, 135, 138, 318, 353, 368
Lsp1109I GCAGC 2 cut(s) 212, 301
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 97, 188
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MluCI AATT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 327
MnlI CCTC 7 cut(s) 28, 106, 127, 172, 291, 303, 347
MroI TCCGGA 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 63, 206
NdeII GATC 1 cut(s) 327
NlaIII CATG 1 cut(s) 328
NmuCI GTSAC 2 cut(s) 97, 188
PagI TCATGA 1 cut(s) 324
PauI GCGCGC 1 cut(s) 385
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 17
PflFI GACNNNGTC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 202, 291
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 115
PstI CTGCAG 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 35
PteI GCGCGC 1 cut(s) 385
RsaI GTAC 4 cut(s) 196, 224, 275, 299
RsaNI GTAC 4 cut(s) 195, 223, 274, 298
RseI CAYNNNNRTG 1 cut(s) 123
SalI GTCGAC 1 cut(s) 265
SatI GCNGC 2 cut(s) 201, 290
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 1 cut(s) 115
ScaI AGTACT 2 cut(s) 196, 224
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 123
SetI ASST 5 cut(s) 39, 90, 138, 205, 262
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 1 cut(s) 104
SsiI CCGC 2 cut(s) 6, 55
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 104
TatI WGTACW 4 cut(s) 194, 222, 273, 297
TseFI GTSAC 2 cut(s) 97, 188
TseI GCWGC 2 cut(s) 200, 289
Tsp45I GTSAC 2 cut(s) 97, 188
TspDTI ATGAA 2 cut(s) 241, 313
Tth111I GACNNNGTC 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 2 cut(s) 196, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.