Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8307231.1

Orthogroup ID

OG0003447

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 544

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8307231.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 458 bp

catctgatggtgatcaaccacctcatgatcaacatcacaattacaagaataatgatcaaatgatgtactcaaacatatcatcgtcgtcggatctcaacttgagaaacctctcaaagcttatacttcctcctttgggtgcctcgagctacaaccagccgactcaaatgcactcaaaaggctggattattttacccatggactccagatacaggagttgggagacatttatggtgcttttggtggcatactcagcctgggtatacccgtttgaggttgcttttctcatgtcgtcgtcgggaaaaagcagcaagcctctctacttagcagactacattgttgatctatttttcggcatcgatatcatattgacattcttcgtcgcatatattgatcccagaactcaattacttgttcccgactccaaaaagatcgctacaaggtcacttccttacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0031984 GO:0033993 GO:0034220 GO:0042175 GO:0042221 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ion_trans KHA cNMP_binding

Protein Analysis

151

Amino Acids

17.34

Weight (kDa)

6.38

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22200 AT4G22200
fragaria_vesca	FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980
malus_domestica	MD08G1236000.v1.1
prunus_persica	Prupe.1G572200_v2.0.a1 Prupe.1G572200_v2.0.a1 Prupe.1G572200_v2.0.a1
pyrus_communis	pycom08g20420
rosa_chinensis	RchiOBHm_Chr7g0221301 RchiOBHm_Chr7g0222541
rosa_laevigata	RLG00000002163
rosa_multiflora	Rmu_co8307231.1_g000001 Rmu_sc0000324.1_g000021
rosa_roxburghii	Rroxscaffold_3G00238430
rosa_rugosa	Rorug07G0202000
rosa_samantha	Rh6BG194600 Rh7AG341200 Rh7AG352200 Rh7BG332200 Rh7CG359100 Rh7CG369500 Rh7DG339700
rosa_wichuraiana	Rw7G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	98, 385
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	3 cut(s)	133, 209, 270
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	117, 146
AluI	AGCT	2 cut(s)	117, 146
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	98, 385
Ama87I	CYCGRG	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	141
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BanI	GGYRCC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	3 cut(s)	12, 27, 54
BcoDI	GTCTC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	356
BsaBI	GATNNNNATC	2 cut(s)	11, 32
BsaJI	CCNNGG	2 cut(s)	194, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 209, 270
Bse8I	GATNNNNATC	2 cut(s)	11, 32
BseBI	CCWGG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	194, 254
BseJI	GATNNNNATC	2 cut(s)	11, 32
BseLI	CCNNNNNNNGG	3 cut(s)	133, 209, 270
BseMII	CTCAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	317
BshNI	GGYRCC	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	133, 209, 270
BsmAI	GTCTC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	141
Bsp143I	GATC	7 cut(s)	12, 27, 54, 90, 339, 390, 428
Bsp19I	CCATGG	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	98, 385
BspT107I	GGYRCC	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	194, 254
BssMI	GATC	7 cut(s)	12, 27, 54, 90, 339, 390, 428
BssNAI	GTATAC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	194
Bst1107I	GTATAC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	249, 321
BstDSI	CCRYGG	1 cut(s)	194
BstKTI	GATC	7 cut(s)	15, 30, 57, 93, 342, 393, 431
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	7 cut(s)	12, 27, 54, 90, 339, 390, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BstZ17I	GTATAC	1 cut(s)	261
Bsu15I	ATCGAT	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	310
CciI	TCATGA	1 cut(s)	24
ClaI	ATCGAT	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	3 cut(s)	25, 195, 285
CviJI	RGCY	6 cut(s)	117, 146, 156, 179, 253, 312
CviKI_1	RGCY	6 cut(s)	117, 146, 156, 179, 253, 312
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	2 cut(s)	249, 321
DpnI	GATC	7 cut(s)	14, 29, 56, 92, 341, 392, 430
DpnII	GATC	7 cut(s)	12, 27, 54, 90, 339, 390, 428
Eco130I	CCWWGG	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	3 cut(s)	28, 198, 288
FatI	CATG	3 cut(s)	24, 194, 284
FbaI	TGATCA	3 cut(s)	12, 27, 54
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	306
GluI	GCNGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	186
Hin1II	CATG	3 cut(s)	28, 198, 288
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	3 cut(s)	159, 199, 418
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	6, 90
Hpy188III	TCNNGA	4 cut(s)	25, 203, 296, 415
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	5 cut(s)	87, 90, 294, 297, 382
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	2 cut(s)	249, 321
Hsp92II	CATG	3 cut(s)	28, 198, 288
Ksp22I	TGATCA	3 cut(s)	12, 27, 54
Kzo9I	GATC	7 cut(s)	12, 27, 54, 90, 339, 390, 428
LpnPI	CCDG	7 cut(s)	165, 166, 195, 216, 240, 267, 408
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	7 cut(s)	14, 29, 56, 92, 341, 392, 430
MboI	GATC	7 cut(s)	12, 27, 54, 90, 339, 390, 428
MboII	GAAGA	1 cut(s)	366
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	2 cut(s)	39, 403
MlyI	GAGTC	3 cut(s)	153, 193, 412
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	6 cut(s)	32, 118, 137, 150, 264, 323
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	194
NdeII	GATC	7 cut(s)	12, 27, 54, 90, 339, 390, 428
NlaIII	CATG	3 cut(s)	28, 198, 288
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	141
PagI	TCATGA	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	3 cut(s)	153, 193, 412
PpsI	GAGTC	3 cut(s)	153, 193, 412
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	138
PspXI	VCTCGAGB	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	7 cut(s)	12, 27, 54, 90, 339, 390, 428
SchI	GAGTC	3 cut(s)	153, 193, 412
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	6 cut(s)	24, 110, 119, 148, 275, 442
SfaNI	GCATC	1 cut(s)	362
Sfr274I	CTCGAG	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	99, 141
SmoI	CTYRAG	2 cut(s)	99, 141
Sse9I	AATT	2 cut(s)	39, 403
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	194
TaqI	TCGA	2 cut(s)	142, 356
TasI	AATT	2 cut(s)	39, 403
TatI	WGTACW	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.