Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003447

Physical Location & Seq

Genomic Coordinates Reverse (-)

36517401 .. 36540767

Gene Structure 23367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG194600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGACTAGAAACAGCGTTGAAGCAGCATCAAACTTTGTTGACCGCAATCACTTGCCTCCAAGGTTGAAGAATCAAATTCTGGCCTATATTTGCTTGAGATTTAAGGCTGAGAGCTTGAACCAGCAGCAAATAATTGAACAGCTCCCCAAGTCAATTTGTAAAAGCATCTGTCAACATTTGTTCCTGCCAACAGTAGAGAAAGTTTATCTTTTCAAGGGTGTCTCAAGGGAAATACTTCTAATTCTGGTTGCAAACATGAAGGCAGAGTACATACCACCAAGAGAAGATGTTGTAATGCAAAACGAAGCACCCGATGATATATACATCATTGTTTCTGGAGAAGTGGAAATCATTGATTGTGAGATGGAAAAAGAGCTAGTTGTCGGGACTTTGAAATCTGGGGACATGTTTGGAGAAGTAGGTGCACTTTGTTGCCGAGAAGTTGGTGCACTTTGTTGTAGGCCTCAAAGCTTTACATATTGGACAAAAACACTTTCACAACTCTTGAGACTCAAAACCACTGCACCAATAGAAGCAATGCAGATCAAACAAGAAGACAATGCTCAAATGCTTAAGAACTTCAATCAGCATCACAAAAAGCTTAGGGATCTGAGAATTGGAGAAATATTGGCTGAGAGTGGGGAAGATGAGGCCATGGGTGATCCAAGTTTAGCATTCGACTTATTGACTATTGCCAGCAAAGGGAATGCTGCACTTCTTGAAGAGCTCCTCAAGTCAAAGTTGAATCCTGATATTGGAGACTCCAAAGGAAGAACACCTCTGCATGTAGCAGCATCAAACGGGCATGAAGAATGTGTCTTGGTACTCCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0031984 GO:0033993 GO:0034220 GO:0042175 GO:0042221 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ion_trans KHA cNMP_binding

Protein Analysis

278

Amino Acids

31.12

Weight (kDa)

5.63

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	90 - 168	4.1e-10	Cyclic nucleotide-binding domain
Ank_2	PF12796	229 - 277	1.1e-08	Ankyrin repeats (3 copies)
Ank_4	PF13637	230 - 277	4.8e-07	Ankyrin repeats (many copies)
Ank	PF00023	257 - 277	7.3e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22200 AT4G22200
fragaria_vesca	FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980
malus_domestica	MD08G1236000.v1.1
prunus_persica	Prupe.1G572200_v2.0.a1 Prupe.1G572200_v2.0.a1 Prupe.1G572200_v2.0.a1
pyrus_communis	pycom08g20420
rosa_chinensis	RchiOBHm_Chr7g0221301 RchiOBHm_Chr7g0222541
rosa_laevigata	RLG00000002163
rosa_multiflora	Rmu_co8307231.1_g000001 Rmu_sc0000324.1_g000021
rosa_roxburghii	Rroxscaffold_3G00238430
rosa_rugosa	Rorug07G0202000
rosa_samantha	Rh6BG194600 Rh7AG341200 Rh7AG352200 Rh7BG332200 Rh7CG359100 Rh7CG369500 Rh7DG339700
rosa_wichuraiana	Rw7G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	615, 656
AcsI	RAATTY	1 cut(s)	75
AfaI	GTAC	2 cut(s)	269, 825
AfiI	CCNNNNNNNGG	2 cut(s)	702, 755
AflII	CTTAAG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	9 cut(s)	20, 67, 118, 137, 214, 394, 583, 722, 745
AluBI	AGCT	6 cut(s)	114, 142, 376, 471, 601, 727
AluI	AGCT	6 cut(s)	114, 142, 376, 471, 601, 727
Alw21I	GWGCWC	3 cut(s)	427, 451, 729
Alw26I	GTCTC	3 cut(s)	226, 502, 753
Alw44I	GTGCAC	2 cut(s)	423, 447
AlwI	GGATC	2 cut(s)	615, 656
AoxI	GGCC	3 cut(s)	81, 461, 651
ApaLI	GTGCAC	2 cut(s)	423, 447
ApeKI	GCWGC	4 cut(s)	23, 124, 710, 791
ApoI	RAATTY	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	671
BaeGI	GKGCMC	2 cut(s)	427, 451
BanII	GRGCYC	1 cut(s)	729
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	3 cut(s)	427, 451, 729
BbvI	GCAGC	4 cut(s)	35, 136, 697, 803
BccI	CCATC	1 cut(s)	358
BcoDI	GTCTC	3 cut(s)	226, 502, 753
BfaI	CTAG	2 cut(s)	6, 377
BfrI	CTTAAG	1 cut(s)	572
BisI	GCNGC	4 cut(s)	24, 125, 711, 792
BlsI	GCNGC	4 cut(s)	25, 126, 712, 793
BmsI	GCATC	4 cut(s)	35, 174, 598, 803
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	602
BpuEI	CTTGAG	5 cut(s)	115, 208, 526, 716, 815
BsaJI	CCNNGG	2 cut(s)	59, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	702, 755
Bse3DI	GCAATG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	59, 654
BseLI	CCNNNNNNNGG	2 cut(s)	702, 755
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	99, 602, 624
BseRI	GAGGAG	2 cut(s)	719, 818
BseSI	GKGCMC	2 cut(s)	427, 451
BseXI	GCAGC	4 cut(s)	35, 136, 697, 803
BsgI	GTGCAG	2 cut(s)	507, 696
BshFI	GGCC	3 cut(s)	83, 463, 653
BsiHKAI	GWGCWC	3 cut(s)	427, 451, 729
BslFI	GGGAC	2 cut(s)	400, 416
BslI	CCNNNNNNNGG	2 cut(s)	702, 755
BsmAI	GTCTC	3 cut(s)	226, 502, 753
BsmFI	GGGAC	2 cut(s)	400, 416
BsmI	GAATGC	2 cut(s)	674, 712
BsnI	GGCC	3 cut(s)	83, 463, 653
Bsp1286I	GDGCHC	3 cut(s)	427, 451, 729
Bsp143I	GATC	3 cut(s)	543, 607, 661
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	3 cut(s)	83, 463, 653
BspCNI	CTCAG	3 cut(s)	100, 603, 625
BspPI	GGATC	2 cut(s)	615, 656
BspQI	GCTCTTC	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	543
BssECI	CCNNGG	2 cut(s)	59, 654
BssMI	GATC	3 cut(s)	543, 607, 661
BssT1I	CCWWGG	2 cut(s)	59, 654
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	717
BstAFI	CTTAAG	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	4 cut(s)	108, 602, 611, 633
BstDSI	CCRYGG	1 cut(s)	654
BstKTI	GATC	3 cut(s)	546, 610, 664
BstMAI	GTCTC	3 cut(s)	226, 502, 753
BstMBI	GATC	3 cut(s)	543, 607, 661
BstNSI	RCATGY	2 cut(s)	409, 788
BstSLI	GKGCMC	2 cut(s)	427, 451
BstV1I	GCAGC	4 cut(s)	35, 136, 697, 803
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	3 cut(s)	83, 463, 653
BtgI	CCRYGG	1 cut(s)	654
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	268, 824
CviAII	CATG	5 cut(s)	256, 406, 655, 785, 806
CviQI	GTAC	2 cut(s)	268, 824
DdeI	CTNAG	4 cut(s)	108, 602, 611, 633
DpnI	GATC	3 cut(s)	545, 609, 663
DpnII	GATC	3 cut(s)	543, 607, 661
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	727
Eco130I	CCWWGG	2 cut(s)	59, 654
Eco147I	AGGCCT	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	729
Eco53kI	GAGCTC	1 cut(s)	727
EcoICRI	GAGCTC	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	59, 654
EcoT38I	GRGCYC	1 cut(s)	729
ErhI	CCWWGG	2 cut(s)	59, 654
FaeI	CATG	5 cut(s)	259, 409, 658, 788, 809
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	2 cut(s)	400, 416
FatI	CATG	5 cut(s)	255, 405, 654, 784, 805
Fnu4HI	GCNGC	4 cut(s)	24, 125, 711, 792
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	4 cut(s)	24, 125, 711, 792
FspBI	CTAG	2 cut(s)	6, 377
GluI	GCNGC	4 cut(s)	24, 125, 711, 792
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	83, 463, 653
Hin1II	CATG	5 cut(s)	259, 409, 658, 788, 809
HincII	GTYRAC	2 cut(s)	40, 173
HindII	GTYRAC	2 cut(s)	40, 173
HindIII	AAGCTT	2 cut(s)	469, 599
HinfI	GANTC	4 cut(s)	70, 510, 745, 761
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	4 cut(s)	40, 173, 425, 449
Hpy188I	TCNGA	1 cut(s)	612
Hpy188III	TCNNGA	5 cut(s)	336, 385, 505, 719, 749
Hpy8I	GTNNAC	4 cut(s)	40, 173, 425, 449
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	8 cut(s)	251, 298, 425, 449, 524, 541, 713, 784
HpyF3I	CTNAG	4 cut(s)	108, 602, 611, 633
Hsp92II	CATG	5 cut(s)	259, 409, 658, 788, 809
Kzo9I	GATC	3 cut(s)	543, 607, 661
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	147, 732
LpnPI	CCDG	8 cut(s)	65, 134, 197, 230, 321, 384, 709, 762
Lsp1109I	GCAGC	4 cut(s)	35, 136, 697, 803
LweI	GCATC	4 cut(s)	35, 174, 598, 803
MaeI	CTAG	2 cut(s)	6, 377
MalI	GATC	3 cut(s)	545, 609, 663
MboI	GATC	3 cut(s)	543, 607, 661
MboII	GAAGA	7 cut(s)	79, 296, 566, 656, 734, 783, 821
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	3 cut(s)	427, 451, 729
MluCI	AATT	5 cut(s)	75, 132, 153, 240, 615
MlyI	GAGTC	2 cut(s)	504, 755
MnlI	CCTC	5 cut(s)	66, 474, 643, 740, 789
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	102, 573
MspCI	CTTAAG	1 cut(s)	572
Mva1269I	GAATGC	2 cut(s)	674, 712
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	3 cut(s)	543, 607, 661
NlaIII	CATG	5 cut(s)	259, 409, 658, 788, 809
NmeAIII	GCCGAG	1 cut(s)	461
NspI	RCATGY	2 cut(s)	409, 788
PceI	AGGCCT	1 cut(s)	463
PciI	ACATGT	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	2 cut(s)	674, 712
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	70, 745
PkrI	GCNGC	4 cut(s)	25, 126, 712, 793
PleI	GAGTC	2 cut(s)	504, 755
PpsI	GAGTC	2 cut(s)	504, 755
PscI	ACATGT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	729
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	2 cut(s)	269, 825
RsaNI	GTAC	2 cut(s)	268, 824
SacI	GAGCTC	1 cut(s)	729
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	102, 573
SatI	GCNGC	4 cut(s)	24, 125, 711, 792
Sau3AI	GATC	3 cut(s)	543, 607, 661
SchI	GAGTC	2 cut(s)	504, 755
SduI	GDGCHC	3 cut(s)	427, 451, 729
SetI	ASST	9 cut(s)	65, 116, 144, 378, 424, 473, 603, 729, 781
SfaNI	GCATC	4 cut(s)	35, 174, 598, 803
SmlI	CTYRAG	6 cut(s)	94, 223, 505, 572, 731, 830
SmoI	CTYRAG	6 cut(s)	94, 223, 505, 572, 731, 830
Sse9I	AATT	5 cut(s)	75, 132, 153, 240, 615
SseBI	AGGCCT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	43
SspI	AATATT	1 cut(s)	627
SspMI	CTAG	2 cut(s)	6, 377
SstI	GAGCTC	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	463
StyI	CCWWGG	2 cut(s)	59, 654
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	678
TasI	AATT	5 cut(s)	75, 132, 153, 240, 615
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	70, 745
Tru1I	TTAA	2 cut(s)	102, 573
Tru9I	TTAA	2 cut(s)	102, 573
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	4 cut(s)	23, 124, 710, 791
TspDTI	ATGAA	2 cut(s)	272, 822
TspRI	CASTG	1 cut(s)	526
Vha464I	CTTAAG	1 cut(s)	572
VneI	GTGCAC	2 cut(s)	423, 447
XapI	RAATTY	1 cut(s)	75
XceI	RCATGY	2 cut(s)	409, 788
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	6, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.