Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003447

Physical Location & Seq

Genomic Coordinates Forward (+)

44989572 .. 45009933

Gene Structure 20362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG352200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTTTGTTATGATTTGGCATCAACCCTCCCCTTTGAGGTCATAGGCGAACACAAACTCGGTCTCTCCTACTCTCTCTTGGGATTGCTCCGATTTTGGCGTTTGAGACGAGCAAAGCAACTCTTCACAAGGCTTGAGAAGGACATCAGGTTTAGCTACTTCTGGGTCAGATGCGCCAGGCTTTTATCTAGAAACAGCGTTGAAGCAGCATCAAACTTTGTTGACCGGAATCGCTTGCCTCCAAGGTTGAAGGATCAAATTCTGGCCTATATTTGCTTGAGATTTAAGGCTGAGAGCTTGAACCAGCAGCAAATAATTGAACAGCTCCCCAAGGCAATTTGTAAAAGCATCTGTCAACATTTGTTCCTGCCAACAGTAGAGAAAGTTTATCTTTTCAAGGGTGTCTCAAGGGAAATACTTCTAATTCTGGTTGCAAACATGAAGGCAGAGTACATACCACCAAGAGAAGATGTTGTAATGCAAAACGAAGCACCCGATGATATATACATCATTGTTTCTGGAGAAGTGGAAATCATTGATTGTGAGATGGATAAAGAGCTAGTCGTCGGGACTTTGAAATCTGGGGACATGTTTGGAGAAGTAGGTGCACTTTGTTGCCGAGAAGTTGGTGCATTTTGTTGTAGGCCTCAAAGCTTTACATATGGAACAAAAACACTTTCACAACTCTTGAGAATCAAAACCACTGCACTAATAGAAGCAATGCAGACCAAACAAGAAGACAATGCTCAAATGCTTAAGAACTTCAAGCAGCATCACAAAAAGTTCAGGGATCTGAGAATTGGAGAAATACCGGCTGAGAGTGGGGAAGATGAGGCCATGGGTGATCCAAATTTATCATTCGACTTGTTGACTCTTGCCAGCAAAGGGAATGCTGCACTTCTTGAAGAGCTTCTCAAGTCAAAGTTGAATCCTGACATTGGAGACTCCAAAGGAAGAACACCTCTGATTATGACTTTACGCGATGAAGTACTTATGATTAAGGCATTTTTTGACCAGAAAAAGCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0031984 GO:0033993 GO:0034220 GO:0042175 GO:0042221 GO:0042391 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ion_trans KHA cNMP_binding

Protein Analysis

343

Amino Acids

39.14

Weight (kDa)

8.24

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	151 - 243	1e-10	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22200 AT4G22200
fragaria_vesca	FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980 FvH4_5g28980
malus_domestica	MD08G1236000.v1.1
prunus_persica	Prupe.1G572200_v2.0.a1 Prupe.1G572200_v2.0.a1 Prupe.1G572200_v2.0.a1
pyrus_communis	pycom08g20420
rosa_chinensis	RchiOBHm_Chr7g0221301 RchiOBHm_Chr7g0222541
rosa_laevigata	RLG00000002163
rosa_multiflora	Rmu_co8307231.1_g000001 Rmu_sc0000324.1_g000021
rosa_roxburghii	Rroxscaffold_3G00238430
rosa_rugosa	Rorug07G0202000
rosa_samantha	Rh6BG194600 Rh7AG341200 Rh7AG352200 Rh7BG332200 Rh7CG359100 Rh7CG369500 Rh7DG339700
rosa_wichuraiana	Rw7G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	981
AclWI	GGATC	3 cut(s)	261, 798, 839
AcsI	RAATTY	2 cut(s)	258, 850
AfaI	GTAC	2 cut(s)	452, 990
AfiI	CCNNNNNNNGG	3 cut(s)	37, 885, 938
AflII	CTTAAG	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	9 cut(s)	203, 250, 301, 320, 397, 577, 766, 905, 928
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	6 cut(s)	156, 297, 325, 559, 654, 910
AluI	AGCT	6 cut(s)	156, 297, 325, 559, 654, 910
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	4 cut(s)	68, 100, 409, 936
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	3 cut(s)	261, 798, 839
AoxI	GGCC	3 cut(s)	264, 644, 834
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	4 cut(s)	206, 307, 769, 893
ApoI	RAATTY	2 cut(s)	258, 850
Asp700I	GAANNNNTTC	2 cut(s)	417, 909
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	854
BaeGI	GKGCMC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BbsI	GAAGAC	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	4 cut(s)	218, 319, 781, 880
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	4 cut(s)	68, 100, 409, 936
BfaI	CTAG	2 cut(s)	189, 560
BfrI	CTTAAG	1 cut(s)	755
BisI	GCNGC	4 cut(s)	207, 308, 770, 894
BlsI	GCNGC	4 cut(s)	208, 309, 771, 895
BmcAI	AGTACT	1 cut(s)	990
Bme1390I	CCNGG	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	5 cut(s)	29, 161, 218, 357, 781
BpiI	GAAGAC	1 cut(s)	744
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	5 cut(s)	155, 298, 391, 709, 899
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	242, 330, 837
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 885, 938
Bse118I	RCCGGY	1 cut(s)	811
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	3 cut(s)	242, 330, 837
BseLI	CCNNNNNNNGG	3 cut(s)	37, 885, 938
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	3 cut(s)	282, 785, 807
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	4 cut(s)	218, 319, 781, 880
BsgI	GTGCAG	2 cut(s)	690, 879
Bsh1236I	CGCG	1 cut(s)	981
BshFI	GGCC	3 cut(s)	266, 646, 836
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	226, 812
BslFI	GGGAC	2 cut(s)	583, 599
BslI	CCNNNNNNNGG	3 cut(s)	37, 885, 938
BsmAI	GTCTC	4 cut(s)	68, 100, 409, 936
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	2 cut(s)	583, 599
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	3 cut(s)	266, 646, 836
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	3 cut(s)	253, 790, 844
Bsp19I	CCATGG	1 cut(s)	837
BspANI	GGCC	3 cut(s)	266, 646, 836
BspCNI	CTCAG	3 cut(s)	283, 786, 808
BspFNI	CGCG	1 cut(s)	981
BspPI	GGATC	3 cut(s)	261, 798, 839
BspQI	GCTCTTC	1 cut(s)	900
BspTI	CTTAAG	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	811
BssAI	RCCGGY	1 cut(s)	811
BssECI	CCNNGG	3 cut(s)	242, 330, 837
BssMI	GATC	3 cut(s)	253, 790, 844
BssT1I	CCWWGG	3 cut(s)	242, 330, 837
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	2 cut(s)	128, 900
BstAFI	CTTAAG	1 cut(s)	755
BstC8I	GCNNGC	3 cut(s)	236, 880, 1026
BstDEI	CTNAG	3 cut(s)	291, 794, 816
BstDSI	CCRYGG	1 cut(s)	837
BstFNI	CGCG	1 cut(s)	981
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	256, 793, 847
BstMAI	GTCTC	4 cut(s)	68, 100, 409, 936
BstMBI	GATC	3 cut(s)	253, 790, 844
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	1 cut(s)	981
BstV1I	GCAGC	4 cut(s)	218, 319, 781, 880
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	3 cut(s)	266, 646, 836
BtgI	CCRYGG	1 cut(s)	837
BtgZI	GCGATG	1 cut(s)	996
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	3 cut(s)	236, 880, 1026
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	811
Csp6I	GTAC	2 cut(s)	451, 989
CviAII	CATG	3 cut(s)	439, 589, 838
CviQI	GTAC	2 cut(s)	451, 989
DdeI	CTNAG	3 cut(s)	291, 794, 816
DpnI	GATC	3 cut(s)	255, 792, 846
DpnII	GATC	3 cut(s)	253, 790, 844
Eam1104I	CTCTTC	2 cut(s)	128, 900
EarI	CTCTTC	2 cut(s)	128, 900
Eco130I	CCWWGG	3 cut(s)	242, 330, 837
Eco147I	AGGCCT	1 cut(s)	646
Eco31I	GGTCTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	3 cut(s)	242, 330, 837
ErhI	CCWWGG	3 cut(s)	242, 330, 837
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	3 cut(s)	442, 592, 841
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 375, 407
FaqI	GGGAC	2 cut(s)	583, 599
FatI	CATG	3 cut(s)	438, 588, 837
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	207, 308, 770, 894
Fsp4HI	GCNGC	4 cut(s)	207, 308, 770, 894
FspBI	CTAG	2 cut(s)	189, 560
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	4 cut(s)	207, 308, 770, 894
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	266, 646, 836
HapII	CCGG	2 cut(s)	226, 812
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	442, 592, 841
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	3 cut(s)	223, 356, 870
HindII	GTYRAC	3 cut(s)	223, 356, 870
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	5 cut(s)	229, 693, 871, 928, 944
HpaII	CCGG	2 cut(s)	226, 812
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	4 cut(s)	223, 356, 608, 870
Hpy188I	TCNGA	4 cut(s)	92, 170, 795, 966
Hpy188III	TCNNGA	6 cut(s)	189, 519, 568, 688, 902, 932
Hpy8I	GTNNAC	4 cut(s)	223, 356, 608, 870
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	3 cut(s)	133, 244, 436
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	7 cut(s)	434, 481, 608, 632, 707, 724, 896
HpyF3I	CTNAG	3 cut(s)	291, 794, 816
Hsp92II	CATG	3 cut(s)	442, 592, 841
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	253, 790, 844
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	2 cut(s)	93, 330
Lsp1109I	GCAGC	4 cut(s)	218, 319, 781, 880
LweI	GCATC	5 cut(s)	29, 161, 218, 357, 781
MaeI	CTAG	2 cut(s)	189, 560
MalI	GATC	3 cut(s)	255, 792, 846
MboI	GATC	3 cut(s)	253, 790, 844
MboII	GAAGA	6 cut(s)	115, 479, 749, 839, 917, 966
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	6 cut(s)	258, 315, 336, 423, 798, 850
MlyI	GAGTC	2 cut(s)	865, 938
MnlI	CCTC	6 cut(s)	31, 38, 249, 657, 826, 972
MroXI	GAANNNNTTC	2 cut(s)	417, 909
MseI	TTAA	3 cut(s)	285, 756, 999
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	2 cut(s)	226, 812
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	981
NcoI	CCATGG	1 cut(s)	837
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	3 cut(s)	253, 790, 844
NlaIII	CATG	3 cut(s)	442, 592, 841
NmeAIII	GCCGAG	1 cut(s)	644
NspI	RCATGY	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	646
PciI	ACATGT	1 cut(s)	588
PciSI	GCTCTTC	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PctI	GAATGC	1 cut(s)	895
PdmI	GAANNNNTTC	2 cut(s)	417, 909
PfeI	GAWTC	3 cut(s)	229, 693, 928
PkrI	GCNGC	4 cut(s)	208, 309, 771, 895
PleI	GAGTC	2 cut(s)	865, 938
PpsI	GAGTC	2 cut(s)	865, 938
PscI	ACATGT	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	2 cut(s)	452, 990
RsaNI	GTAC	2 cut(s)	451, 989
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	3 cut(s)	285, 756, 999
SatI	GCNGC	4 cut(s)	207, 308, 770, 894
Sau3AI	GATC	3 cut(s)	253, 790, 844
ScaI	AGTACT	1 cut(s)	990
SchI	GAGTC	2 cut(s)	865, 938
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	5 cut(s)	29, 161, 218, 357, 781
SmlI	CTYRAG	6 cut(s)	134, 277, 406, 688, 755, 914
SmoI	CTYRAG	6 cut(s)	134, 277, 406, 688, 755, 914
Sse9I	AATT	6 cut(s)	258, 315, 336, 423, 798, 850
SseBI	AGGCCT	1 cut(s)	646
SspMI	CTAG	2 cut(s)	189, 560
StuI	AGGCCT	1 cut(s)	646
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	3 cut(s)	242, 330, 837
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	1 cut(s)	861
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	6 cut(s)	258, 315, 336, 423, 798, 850
TatI	WGTACW	2 cut(s)	450, 988
TfiI	GAWTC	3 cut(s)	229, 693, 928
Tru1I	TTAA	3 cut(s)	285, 756, 999
Tru9I	TTAA	3 cut(s)	285, 756, 999
TscAI	CASTG	1 cut(s)	709
TseI	GCWGC	4 cut(s)	206, 307, 769, 893
TspDTI	ATGAA	2 cut(s)	455, 999
TspRI	CASTG	1 cut(s)	709
Vha464I	CTTAAG	1 cut(s)	755
VneI	GTGCAC	1 cut(s)	606
XapI	RAATTY	2 cut(s)	258, 850
XbaI	TCTAGA	1 cut(s)	188
XceI	RCATGY	1 cut(s)	592
XmnI	GAANNNNTTC	2 cut(s)	417, 909
XspI	CTAG	2 cut(s)	189, 560
ZrmI	AGTACT	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.