Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8339159.1

Orthogroup ID

OG0012252

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 992

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8339159.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 992 bp

aagtcagagaaatctttagaacctgggctgatgaagtggtgcaagagttccttgagtcattggatgagcgttgggattggtatcgaaagctatcagcaggtaattttctgtctttaagacatattagacaacaattgcccgaagagcttgtagatgcttatgataagttccaagagcaagtagacaagcatttgaacccagtcagagatagaaaagcaagagaggaagaagaaaggagggtaacagaagaagcggagcagaaatatgccaagagaacagttgaggatttgacaaagctctgtgtgaaagctgatgcgcctatagaagttttgaggaagatggtcaagttaattgggtttacaaatcatatgggtcgtcccaggccaatcactttactaactgctcttgaagatgctgatatcatcaagtggtatgcaggtgtagggagaagattgcttgatttttactgctgctgccataacttcaagatggtcaaaactattgtaacttatcacttgaggttctcctgcatcttgactcttgctgaaaagcatgaatccaccaaaagtgaagccatgaaacattatactaaagatttgaaagtctttgatataaatggaaatcaagaagtatactttcccacagaaagagaggtaaagatgatgggagataaaaatctttctgatccaatacctgtggatggggcattttctttggctctgattagattagcttctgatgagcctccatattcttgtgttgctcatttctgtgacagaactgatactattgtttatcgggtacgattattgcaaagtcgattgaatctgacccccgtggatgataagaaatgggtgccggggatgggtgcaattaatgagagcctccatctgaaatgcttccctctttgtcctgatcacatacatgatctatacatggggagcattacctttcaagatattgattgtacatcatttgtggatgtagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0003964 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006278 GO:0006310 GO:0006314 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090615 GO:0140053 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

329

Amino Acids

38.44

Weight (kDa)

5.93

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04050 AT5G04050
fragaria_vesca	FvH4_6g25070
malus_domestica	MD12G1089700.v1.1
prunus_persica	Prupe.7G047200_v2.0.a1 Prupe.7G047200_v2.0.a1 Prupe.7G047200_v2.0.a1
pyrus_communis	pycom12g07560
rosa_chinensis	RchiOBHm_Chr2g0124831
rosa_laevigata	RLG00000018826
rosa_multiflora	Rmu_co8339159.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119620
rosa_rugosa	Rorug02G0253000
rosa_samantha	Rh2AG068200 Rh2AG312500 Rh2BG320700 Rh2CG300700 Rh2DG338000
rosa_wichuraiana	Rw2G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	2 cut(s)	88, 427
AccB1I	GGYRCC	1 cut(s)	855
AccI	GTMKAC	3 cut(s)	182, 632, 986
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	679
AfaI	GTAC	2 cut(s)	803, 969
AfiI	CCNNNNNNNGG	2 cut(s)	700, 865
AgsI	TTSAA	6 cut(s)	195, 409, 486, 600, 825, 955
AjnI	CCWGG	2 cut(s)	22, 379
AluBI	AGCT	5 cut(s)	90, 147, 297, 310, 733
AluI	AGCT	5 cut(s)	90, 147, 297, 310, 733
AlwI	GGATC	1 cut(s)	679
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	470, 473
AseI	ATTAAT	1 cut(s)	875
Asp700I	GAANNNNTTC	1 cut(s)	898
AspLEI	GCGC	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	860
BaeI	ACNNNNGTAYC	2 cut(s)	776, 809
BanI	GGYRCC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	457, 460
BccI	CCATC	6 cut(s)	333, 483, 657, 694, 858, 896
BciT130I	CCWGG	2 cut(s)	24, 381
BclI	TGATCA	1 cut(s)	915
BcnI	CCSGG	1 cut(s)	860
BfmI	CTRYAG	1 cut(s)	320
BfuAI	ACCTGC	2 cut(s)	88, 427
BisI	GCNGC	2 cut(s)	471, 474
BlsI	GCNGC	2 cut(s)	472, 475
Bme1390I	CCNGG	3 cut(s)	24, 381, 860
BmiI	GGNNCC	1 cut(s)	857
BmrFI	CCNGG	3 cut(s)	24, 381, 860
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	4 cut(s)	144, 303, 402, 539
BmuI	ACTGGG	1 cut(s)	193
BpuEI	CTTGAG	2 cut(s)	73, 537
BpuMI	CCSGG	1 cut(s)	860
BsaBI	GATNNNNATC	2 cut(s)	80, 674
BsaJI	CCNNGG	4 cut(s)	23, 379, 836, 859
Bsc4I	CCNNNNNNNGG	2 cut(s)	700, 865
Bse1I	ACTGG	1 cut(s)	199
Bse8I	GATNNNNATC	2 cut(s)	80, 674
BseBI	CCWGG	2 cut(s)	24, 381
BseDI	CCNNGG	4 cut(s)	23, 379, 836, 859
BseGI	GGATG	5 cut(s)	69, 705, 846, 869, 987
BseJI	GATNNNNATC	2 cut(s)	80, 674
BseLI	CCNNNNNNNGG	2 cut(s)	700, 865
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	457, 460
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	855
BsiSI	CCGG	1 cut(s)	859
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	700, 865
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	384
Bsp1407I	TGTACA	1 cut(s)	967
Bsp143I	GATC	3 cut(s)	684, 915, 927
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	857
BspMI	ACCTGC	2 cut(s)	88, 427
BspPI	GGATC	1 cut(s)	679
BspQI	GCTCTTC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	855
BsrGI	TGTACA	1 cut(s)	967
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	4 cut(s)	23, 379, 836, 859
BssMI	GATC	3 cut(s)	684, 915, 927
BssNAI	GTATAC	1 cut(s)	633
Bst1107I	GTATAC	1 cut(s)	633
Bst2UI	CCWGG	2 cut(s)	24, 381
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	967
BstDSI	CCRYGG	1 cut(s)	836
BstF5I	GGATG	5 cut(s)	69, 705, 846, 869, 987
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	3 cut(s)	687, 918, 930
BstMBI	GATC	3 cut(s)	684, 915, 927
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	2 cut(s)	24, 381
BstSCI	CCNGG	3 cut(s)	22, 379, 858
BstSFI	CTRYAG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	457, 460
BstZ17I	GTATAC	1 cut(s)	633
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	836
BtsCI	GGATG	5 cut(s)	69, 705, 846, 869, 987
BveI	ACCTGC	2 cut(s)	88, 427
CfoI	GCGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	802, 968
CspCI	CAANNNNNGTGG	2 cut(s)	677, 712
CviAII	CATG	4 cut(s)	553, 576, 925, 936
CviQI	GTAC	2 cut(s)	802, 968
DpnI	GATC	3 cut(s)	686, 917, 929
DpnII	GATC	3 cut(s)	684, 915, 927
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	22, 379
EcoRV	GATATC	1 cut(s)	420
FaeI	CATG	4 cut(s)	556, 579, 928, 939
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	4 cut(s)	552, 575, 924, 935
FauNDI	CATATG	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	915
FblI	GTMKAC	3 cut(s)	182, 632, 986
Fnu4HI	GCNGC	2 cut(s)	471, 474
FokI	GGATG	4 cut(s)	76, 712, 853, 876
Fsp4HI	GCNGC	2 cut(s)	471, 474
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	471, 474
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	1 cut(s)	859
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	556, 579, 928, 939
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	4 cut(s)	55, 537, 556, 825
HpaII	CCGG	1 cut(s)	859
Hpy166II	GTNNAC	4 cut(s)	183, 359, 633, 987
Hpy188I	TCNGA	7 cut(s)	7, 205, 684, 722, 738, 830, 893
Hpy188III	TCNNGA	6 cut(s)	406, 486, 534, 625, 913, 955
Hpy8I	GTNNAC	4 cut(s)	183, 359, 633, 987
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	5 cut(s)	42, 436, 530, 813, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	556, 579, 928, 939
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	915
Kzo9I	GATC	3 cut(s)	684, 915, 927
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	255, 941
Lsp1109I	GCAGC	2 cut(s)	457, 460
LweI	GCATC	4 cut(s)	144, 303, 402, 539
MaeIII	GTNAC	3 cut(s)	240, 504, 772
MalI	GATC	3 cut(s)	686, 917, 929
MboI	GATC	3 cut(s)	684, 915, 927
MboII	GAAGA	7 cut(s)	154, 238, 241, 259, 348, 421, 461
MfeI	CAATTG	1 cut(s)	133
MluCI	AATT	4 cut(s)	102, 133, 350, 872
MlyI	GAGTC	2 cut(s)	64, 531
MnlI	CCTC	9 cut(s)	216, 230, 276, 326, 512, 645, 755, 895, 914
MroXI	GAANNNNTTC	1 cut(s)	898
MseI	TTAA	3 cut(s)	115, 349, 875
MslI	CAYNNNNRTG	2 cut(s)	770, 923
MspI	CCGG	1 cut(s)	859
MspR9I	CCNGG	3 cut(s)	24, 381, 860
MunI	CAATTG	1 cut(s)	133
MvaI	CCWGG	2 cut(s)	24, 381
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	860
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	3 cut(s)	684, 915, 927
NlaIII	CATG	4 cut(s)	556, 579, 928, 939
NlaIV	GGNNCC	1 cut(s)	857
NmuCI	GTSAC	1 cut(s)	772
PaqCI	CACCTGC	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	898
PfeI	GAWTC	2 cut(s)	556, 825
PkrI	GCNGC	2 cut(s)	472, 475
PleI	GAGTC	2 cut(s)	63, 531
PpsI	GAGTC	2 cut(s)	63, 531
PshBI	ATTAAT	1 cut(s)	875
Psp6I	CCWGG	2 cut(s)	22, 379
PspGI	CCWGG	2 cut(s)	22, 379
PspN4I	GGNNCC	1 cut(s)	857
RsaI	GTAC	2 cut(s)	803, 969
RsaNI	GTAC	2 cut(s)	802, 968
RseI	CAYNNNNRTG	2 cut(s)	770, 923
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	115, 349, 875
SatI	GCNGC	2 cut(s)	471, 474
Sau3AI	GATC	3 cut(s)	684, 915, 927
SchI	GAGTC	2 cut(s)	64, 531
ScrFI	CCNGG	3 cut(s)	24, 381, 860
SfaNI	GCATC	4 cut(s)	144, 303, 402, 539
SfcI	CTRYAG	1 cut(s)	320
SmiMI	CAYNNNNRTG	2 cut(s)	770, 923
SmlI	CTYRAG	2 cut(s)	52, 516
SmoI	CTYRAG	2 cut(s)	52, 516
Sse9I	AATT	4 cut(s)	102, 133, 350, 872
SsiI	CCGC	1 cut(s)	253
StyD4I	CCNGG	3 cut(s)	22, 379, 858
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	84, 819
TasI	AATT	4 cut(s)	102, 133, 350, 872
TatI	WGTACW	1 cut(s)	967
TfiI	GAWTC	2 cut(s)	556, 825
Tru1I	TTAA	3 cut(s)	115, 349, 875
Tru9I	TTAA	3 cut(s)	115, 349, 875
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	2 cut(s)	470, 473
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	3 cut(s)	47, 569, 592
VspI	ATTAAT	1 cut(s)	875
XmiI	GTMKAC	3 cut(s)	182, 632, 986
XmnI	GAANNNNTTC	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.