Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012252

Physical Location & Seq

Genomic Coordinates Reverse (-)

51554892 .. 51557180

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2289 bp

ATGCTCATAAACCTCAGAAGAACAACAGCCATTCCATTTCACCAAAAACCCTCACTTTGCAAACTCCTCTCAACTTGTACACCAAATCCAAATCCAAACTCCAACTCGACACAGCCTCTTTCAGAATCACAACTCAAATCCTTAGTTCTCAGCCGCTACACTCGCGGCAAATTCACCAACCTCCTCCAAAACGTCGTCGCTTTGCCCGCTGTTCTCCTCACCGCCTGCCAAAACCTCACCACCCCTCAAACCCAGAATGGCCTCCGCCTCTCCCTTCCCGACTCGGTCTCGAAGCGGTTCTCAATTCACGAAATGGGTCGCGAGCTCTGCGAGAATCGGTTCGATGTGGGAGCTTCTAGTGTCGCAATGGCGGCCCCAAGAAACGGAGGTGAGTCTTTGGTCTTACCCAGTTTGAAACTCAAAGTTTTGATCGAAGCTATTAGGATTGTATTGGGCATTGTTTATGATGAACGCTTTGTGACGTTTTCTTATGGCGGTCGTGTTAACATGGGGAGGCACACGGCCATTAGGTACCTTAAGAACTCTGTTGAAAATCCCAGTTGGTGGTTTAGCGTTAGCTTTAATCGGGATAAGTTTGAACAACGACATGTCAATAAGCTATGCTTGTTTATGCACGAGAAAATAGAGGATGAGGTTTTGATTAATATGGTTAAGACATTGTTTGAATGTGGCGCGGTGAGAATTGAATTGGGTGGTTGTTGCTTTGGAAGAGGGTTTCCTCAGGAGAGTGGGTTGAGTTCAATTTTAATGAACATTTACTTTAATGGTTTCGATAAAGAAATTCAAGAGATGCGTCTGAGGAAGAATCAGGAGCATCCCAAATTCGAGTCGAATGAGCTTGTTTCAAATGATGGTGTTTTCTATAAGCCTGTCAAGATATATGCGGTGAGGTACTTGGATGAGATATTAGTGATGACGTCTGGGTCCAAAATGTTGACTATGGATTTGAAGAACTGGGTTGTCAAGTACTTAGAAGGGAGTTTGGAATTGATGGTGGATAAGATTAAAACATCTATTCATAGTGCAGCGTCTGAGAAGATTGATTTCATGGGCATGGAATTACAGGCAGTTCCACCTTCCGTGTTGCATCCCCCTATGTCTGAAAAAGCTATTAGAGCACGAAAAAAGTACCTTAGACAGAAGGAAGTCAGAGCTATAGAATTGAAACATGCTAGAGAGAGGAACAGAAAAAAATTGGGAATGAAAATAATGAGCCATGTTTTTAAAAAGTTGAAGAGCAGTGATGGATTGAAATCTGAGTATCAAATTGAGAATGAAGTCAGAGAAATCTTTAGAACCTGGGCTGATGAAGTGGTGCAAGAGTTCCTTGAGTCATTGGATGAGCGTTGGGATTGGTATCGAAAGCTATCAGCAGGTAATTTTCTGTCTTTAAGACATATTAGACAACAATTGCCTGAAGAGCTTGTAGATGCTTATGATAAGTTCCAAGAGCAAGTAGACAAGCATTTGAACCCAGTCAGAGATAGAAAAGCAAGAGAGGAAGAAGAAAGGAGGGTAACAGAAGAAGCGGAGCAGAAATATGCCAAGAGAACAGTTGAGGATTTGACAAAGCTCTGTGTGAAAGCTGATGCGCCTATAGAAGTTTTGAGGAAGATGGTCAAGTTAATTGGGTTTACAAATCATATGGGTCGTCCCAGGCCAATCACTTTACTAACTGCTCTTGAAGATGCTGATATCATCAAGTGGTATGCAGGTGTAGGGAGAAGATTGCTTGATTTTTACTGCTGCTGCCATAACTTCAAGATGGTCAAAACTATTGTAACTTATCACTTGAGGTTCTCCTGTATCTTGACTCTAGCTGAAAAGCATGAATCCACCAAAAGTGAAGCCATGAAACATTATACTAAAGATCTGAAAGTCTTTGATATAAATGGAAATCAAGAAGTTTACTTTCCCACAGAAAGAGAGGTAAAGATGATGGGAGATAAAAATCGTTCTGATCCAATACCTGTGGATGGGGCATTTTCTTTGGCTCTGATTAGATTAGCTTCTGATGAGCCTCCACATTTTTGTGTTGCTCATTTCTGTGACAGAACTGATACTATTGTTTATCGGGTACGATTATTGCAAAGTCGATTGAATCTAACCCCCATGGATGATAAGAAATGGGTTCCGGGGATGGGTGCAATTAATGAGAGCCTCCATCTGAAATGCTTCCCTCTTTGTCCTGATCACATACATGATTTATACATGGGGAGCATTACACTTCAAGATATTGATTGTACATCATTTGTGGATGTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0003964 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006278 GO:0006310 GO:0006314 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090615 GO:0140053 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

762

Amino Acids

87.86

Weight (kDa)

8.82

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Intron_maturas2	PF01348	537 - 637	1.8e-16	Type II intron maturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04050 AT5G04050
fragaria_vesca	FvH4_6g25070
malus_domestica	MD12G1089700.v1.1
prunus_persica	Prupe.7G047200_v2.0.a1 Prupe.7G047200_v2.0.a1 Prupe.7G047200_v2.0.a1
pyrus_communis	pycom12g07560
rosa_chinensis	RchiOBHm_Chr2g0124831
rosa_laevigata	RLG00000018826
rosa_multiflora	Rmu_co8339159.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119620
rosa_rugosa	Rorug02G0253000
rosa_samantha	Rh2AG068200 Rh2AG312500 Rh2BG320700 Rh2CG300700 Rh2DG338000
rosa_wichuraiana	Rw2G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1724
AasI	GACNNNNNNGTC	1 cut(s)	943
AatII	GACGTC	1 cut(s)	941
Acc36I	ACCTGC	2 cut(s)	1385, 1724
Acc65I	GGTACC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	531
AccB7I	CCANNNNNTGG	1 cut(s)	564
AccI	GTMKAC	2 cut(s)	1479, 2283
AccII	CGCG	3 cut(s)	165, 321, 695
AclWI	GGATC	1 cut(s)	1976
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	3 cut(s)	170, 801, 842
AcuI	CTGAAG	1 cut(s)	1458
AcyI	GRCGYC	1 cut(s)	938
AfaI	GTAC	7 cut(s)	79, 533, 914, 989, 1151, 2100, 2266
AfiI	CCNNNNNNNGG	4 cut(s)	383, 564, 1997, 2162
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	607
AjnI	CCWGG	2 cut(s)	1319, 1676
Alw21I	GWGCWC	2 cut(s)	327, 1141
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	1976
AlwNI	CAGNNNCTG	1 cut(s)	1052
AoxI	GGCC	4 cut(s)	259, 372, 522, 1679
ApeKI	GCWGC	3 cut(s)	1046, 1767, 1770
ApoI	RAATTY	3 cut(s)	170, 801, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	949, 981
AseI	ATTAAT	2 cut(s)	663, 2172
Asp700I	GAANNNNTTC	3 cut(s)	296, 338, 2195
Asp718I	GGTACC	1 cut(s)	531
AspLEI	GCGC	2 cut(s)	695, 1615
AspS9I	GGNCC	2 cut(s)	373, 945
AsuC2I	CCSGG	1 cut(s)	2157
AsuHPI	GGTGA	7 cut(s)	32, 166, 211, 229, 401, 709, 919
AvaII	GGWCC	1 cut(s)	945
AxyI	CCTNAGG	1 cut(s)	741
BaeI	ACNNNNGTAYC	2 cut(s)	2073, 2106
BanI	GGYRCC	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	635
Bbv12I	GWGCWC	2 cut(s)	327, 1141
BbvI	GCAGC	3 cut(s)	1058, 1754, 1757
BccI	CCATC	9 cut(s)	866, 1006, 1259, 1630, 1780, 1954, 1991, 2155, 2193
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	2 cut(s)	1321, 1678
BclI	TGATCA	1 cut(s)	2212
BcnI	CCSGG	1 cut(s)	2157
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	3 cut(s)	357, 1194, 1838
BfmI	CTRYAG	2 cut(s)	1176, 1617
BfrI	CTTAAG	1 cut(s)	536
BfuAI	ACCTGC	2 cut(s)	1385, 1724
BglII	AGATCT	1 cut(s)	1891
BisI	GCNGC	6 cut(s)	154, 166, 372, 1047, 1768, 1771
BlsI	GCNGC	6 cut(s)	155, 167, 373, 1048, 1769, 1772
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	3 cut(s)	1321, 1678, 2157
Bme18I	GGWCC	1 cut(s)	945
BmgT120I	GGNCC	2 cut(s)	373, 945
BmiI	GGNNCC	4 cut(s)	375, 533, 946, 2154
BmrFI	CCNGG	3 cut(s)	1321, 1678, 2157
BmrI	ACTGGG	4 cut(s)	402, 552, 985, 1490
BmsI	GCATC	6 cut(s)	801, 844, 1117, 1441, 1600, 1699
BmuI	ACTGGG	4 cut(s)	402, 552, 985, 1490
BpuEI	CTTGAG	2 cut(s)	1370, 1834
BpuMI	CCSGG	1 cut(s)	2157
BsaBI	GATNNNNATC	3 cut(s)	1273, 1377, 1971
BsaHI	GRCGYC	1 cut(s)	938
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	4 cut(s)	1320, 1676, 2133, 2156
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	4 cut(s)	383, 564, 1997, 2162
Bse1I	ACTGG	4 cut(s)	408, 558, 980, 1496
Bse21I	CCTNAGG	1 cut(s)	741
Bse3DI	GCAATG	1 cut(s)	372
Bse8I	GATNNNNATC	3 cut(s)	1273, 1377, 1971
BseBI	CCWGG	2 cut(s)	1321, 1678
BseDI	CCNNGG	4 cut(s)	1320, 1676, 2133, 2156
BseGI	GGATG	9 cut(s)	655, 835, 925, 1108, 1366, 2002, 2143, 2166, 2284
BseJI	GATNNNNATC	3 cut(s)	1273, 1377, 1971
BseLI	CCNNNNNNNGG	4 cut(s)	383, 564, 1997, 2162
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	6 cut(s)	28, 163, 755, 809, 1044, 1269
BseNI	ACTGG	4 cut(s)	408, 558, 980, 1496
BseRI	GAGGAG	3 cut(s)	56, 173, 206
BseXI	GCAGC	3 cut(s)	1058, 1754, 1757
BsgI	GTGCAG	1 cut(s)	1065
Bsh1236I	CGCG	3 cut(s)	165, 321, 695
Bsh1285I	CGRYCG	1 cut(s)	499
BshFI	GGCC	4 cut(s)	261, 374, 524, 1681
BshNI	GGYRCC	1 cut(s)	531
BsiEI	CGRYCG	1 cut(s)	499
BsiHKAI	GWGCWC	2 cut(s)	327, 1141
BsiSI	CCGG	1 cut(s)	2156
BslFI	GGGAC	1 cut(s)	1659
BslI	CCNNNNNNNGG	4 cut(s)	383, 564, 1997, 2162
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	1659
BsnI	GGCC	4 cut(s)	261, 374, 524, 1681
Bso31I	GGTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	327, 1141
Bsp1407I	TGTACA	2 cut(s)	77, 2264
Bsp143I	GATC	4 cut(s)	429, 1891, 1981, 2212
Bsp19I	CCATGG	1 cut(s)	2133
Bsp68I	TCGCGA	1 cut(s)	321
BspANI	GGCC	4 cut(s)	261, 374, 524, 1681
BspCNI	CTCAG	6 cut(s)	27, 162, 754, 810, 1045, 1270
BspFNI	CGCG	3 cut(s)	165, 321, 695
BspLI	GGNNCC	4 cut(s)	375, 533, 946, 2154
BspMI	ACCTGC	2 cut(s)	1385, 1724
BspPI	GGATC	1 cut(s)	1976
BspQI	GCTCTTC	2 cut(s)	1250, 1434
BspT107I	GGYRCC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	372
BsrGI	TGTACA	2 cut(s)	77, 2264
BsrI	ACTGG	4 cut(s)	408, 558, 980, 1496
BssECI	CCNNGG	4 cut(s)	1320, 1676, 2133, 2156
BssMI	GATC	4 cut(s)	429, 1891, 1981, 2212
BssNI	GRCGYC	1 cut(s)	938
BssSI	CACGAG	1 cut(s)	635
BssT1I	CCWWGG	1 cut(s)	2133
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	2 cut(s)	1321, 1678
Bst4CI	ACNGT	1 cut(s)	1576
Bst6I	CTCTTC	3 cut(s)	724, 1250, 1434
BstACI	GRCGYC	1 cut(s)	938
BstAFI	CTTAAG	1 cut(s)	536
BstAUI	TGTACA	2 cut(s)	77, 2264
BstC8I	GCNNGC	3 cut(s)	207, 226, 323
BstDEI	CTNAG	9 cut(s)	14, 142, 149, 741, 818, 991, 1053, 1154, 1278
BstDSI	CCRYGG	1 cut(s)	2133
BstF5I	GGATG	9 cut(s)	655, 835, 925, 1108, 1366, 2002, 2143, 2166, 2284
BstFNI	CGCG	3 cut(s)	165, 321, 695
BstHHI	GCGC	2 cut(s)	695, 1615
BstKTI	GATC	4 cut(s)	432, 1894, 1984, 2215
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	4 cut(s)	429, 1891, 1981, 2212
BstMCI	CGRYCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	6 cut(s)	162, 206, 327, 371, 1136, 1441
BstNI	CCWGG	2 cut(s)	1321, 1678
BstNSI	RCATGY	2 cut(s)	611, 1193
BstSCI	CCNGG	3 cut(s)	1319, 1676, 2155
BstSFI	CTRYAG	2 cut(s)	1176, 1617
BstUI	CGCG	3 cut(s)	165, 321, 695
BstV1I	GCAGC	3 cut(s)	1058, 1754, 1757
BstX2I	RGATCY	1 cut(s)	1891
BstYI	RGATCY	1 cut(s)	1891
Bsu36I	CCTNAGG	1 cut(s)	741
BsuRI	GGCC	4 cut(s)	261, 374, 524, 1681
BtgI	CCRYGG	1 cut(s)	2133
BtsCI	GGATG	9 cut(s)	655, 835, 925, 1108, 1366, 2002, 2143, 2166, 2284
BtsI	GCAGTG	1 cut(s)	1267
BtsIMutI	CAGTG	1 cut(s)	1267
BtuMI	TCGCGA	1 cut(s)	321
BveI	ACCTGC	2 cut(s)	1385, 1724
Cac8I	GCNNGC	3 cut(s)	207, 226, 323
CaiI	CAGNNNCTG	1 cut(s)	1052
CfoI	GCGC	2 cut(s)	695, 1615
Cfr13I	GGNCC	2 cut(s)	373, 945
CseI	GACGC	2 cut(s)	803, 1038
Csp6I	GTAC	7 cut(s)	78, 532, 913, 988, 1150, 2099, 2265
CspCI	CAANNNNNGTGG	2 cut(s)	1974, 2009
CviQI	GTAC	7 cut(s)	78, 532, 913, 988, 1150, 2099, 2265
DdeI	CTNAG	9 cut(s)	14, 142, 149, 741, 818, 991, 1053, 1154, 1278
DpnI	GATC	4 cut(s)	431, 1893, 1983, 2214
DpnII	GATC	4 cut(s)	429, 1891, 1981, 2212
DraI	TTTAAA	1 cut(s)	1246
DrdI	GACNNNNNNGTC	1 cut(s)	943
DseDI	GACNNNNNNGTC	1 cut(s)	943
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	3 cut(s)	724, 1250, 1434
EarI	CTCTTC	3 cut(s)	724, 1250, 1434
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	2133
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	1717
Eco47I	GGWCC	1 cut(s)	945
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	1458
Eco81I	CCTNAGG	1 cut(s)	741
EcoICRI	GAGCTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	1319, 1676
EcoRV	GATATC	1 cut(s)	1717
EcoT14I	CCWWGG	1 cut(s)	2133
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	2133
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 1332, 1364
FaqI	GGGAC	1 cut(s)	1659
FauI	CCCGC	1 cut(s)	214
FauNDI	CATATG	1 cut(s)	1665
FbaI	TGATCA	1 cut(s)	2212
FblI	GTMKAC	2 cut(s)	1479, 2283
Fnu4HI	GCNGC	6 cut(s)	154, 166, 372, 1047, 1768, 1771
FokI	GGATG	8 cut(s)	662, 822, 932, 1095, 1373, 2009, 2150, 2173
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	6 cut(s)	154, 166, 372, 1047, 1768, 1771
FspBI	CTAG	3 cut(s)	357, 1194, 1838
GlaI	GCGC	2 cut(s)	694, 1614
GluI	GCNGC	6 cut(s)	154, 166, 372, 1047, 1768, 1771
HaeIII	GGCC	4 cut(s)	261, 374, 524, 1681
HapII	CCGG	1 cut(s)	2156
HgaI	GACGC	2 cut(s)	803, 1038
HhaI	GCGC	2 cut(s)	695, 1615
Hin1I	GRCGYC	1 cut(s)	938
Hin6I	GCGC	2 cut(s)	693, 1613
HinP1I	GCGC	2 cut(s)	693, 1613
HincII	GTYRAC	2 cut(s)	505, 957
HindII	GTYRAC	2 cut(s)	505, 957
HpaI	GTTAAC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	2156
HphI	GGTGA	7 cut(s)	32, 166, 211, 229, 401, 709, 919
Hpy166II	GTNNAC	7 cut(s)	80, 505, 957, 1480, 1656, 1930, 2284
Hpy8I	GTNNAC	7 cut(s)	80, 505, 957, 1480, 1656, 1930, 2284
Hpy99I	CGWCG	2 cut(s)	197, 200
HpyAV	CCTTC	4 cut(s)	284, 989, 1107, 1156
HpyCH4III	ACNGT	1 cut(s)	1576
HpyCH4IV	ACGT	3 cut(s)	192, 482, 938
HpyCH4V	TGCA	8 cut(s)	60, 634, 1046, 1108, 1339, 1733, 2110, 2168
HpyF10VI	GCNNNNNNNGC	6 cut(s)	162, 206, 327, 371, 1136, 1441
HpyF3I	CTNAG	9 cut(s)	14, 142, 149, 741, 818, 991, 1053, 1154, 1278
HpySE526I	ACGT	3 cut(s)	192, 482, 938
Hsp92I	GRCGYC	1 cut(s)	938
HspAI	GCGC	2 cut(s)	693, 1613
KpnI	GGTACC	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	2212
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	429, 1891, 1981, 2212
LguI	GCTCTTC	2 cut(s)	1250, 1434
LmnI	GCTCC	4 cut(s)	350, 832, 1552, 2238
Lsp1109I	GCAGC	3 cut(s)	1058, 1754, 1757
LweI	GCATC	6 cut(s)	801, 844, 1117, 1441, 1600, 1699
MaeI	CTAG	3 cut(s)	357, 1194, 1838
MaeII	ACGT	3 cut(s)	192, 482, 938
MaeIII	GTNAC	4 cut(s)	478, 1537, 1801, 2069
MalI	GATC	4 cut(s)	431, 1893, 1983, 2214
MboI	GATC	4 cut(s)	429, 1891, 1981, 2212
MfeI	CAATTG	1 cut(s)	1430
MflI	RGATCY	1 cut(s)	1891
MhlI	GDGCHC	2 cut(s)	327, 1141
MlyI	GAGTC	5 cut(s)	275, 401, 857, 1361, 1828
MmeI	TCCRAC	1 cut(s)	126
MroXI	GAANNNNTTC	3 cut(s)	296, 338, 2195
MslI	CAYNNNNRTG	4 cut(s)	1073, 2052, 2067, 2220
MspA1I	CMGCKG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	1 cut(s)	2156
MspR9I	CCNGG	3 cut(s)	1321, 1678, 2157
MunI	CAATTG	1 cut(s)	1430
MvaI	CCWGG	2 cut(s)	1321, 1678
MvnI	CGCG	3 cut(s)	165, 321, 695
MwoI	GCNNNNNNNGC	6 cut(s)	162, 206, 327, 371, 1136, 1441
NciI	CCSGG	1 cut(s)	2157
NcoI	CCATGG	1 cut(s)	2133
NdeI	CATATG	1 cut(s)	1665
NdeII	GATC	4 cut(s)	429, 1891, 1981, 2212
NlaIV	GGNNCC	4 cut(s)	375, 533, 946, 2154
NmuCI	GTSAC	2 cut(s)	478, 2069
NruI	TCGCGA	1 cut(s)	321
NspI	RCATGY	2 cut(s)	611, 1193
PaqCI	CACCTGC	1 cut(s)	1724
PciI	ACATGT	1 cut(s)	607
PciSI	GCTCTTC	2 cut(s)	1250, 1434
PdmI	GAANNNNTTC	3 cut(s)	296, 338, 2195
PfeI	GAWTC	5 cut(s)	125, 334, 826, 1853, 2122
PflFI	GACNNNGTC	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	564
PkrI	GCNGC	6 cut(s)	155, 167, 373, 1048, 1769, 1772
PleI	GAGTC	5 cut(s)	275, 400, 856, 1360, 1828
PpsI	GAGTC	5 cut(s)	275, 400, 856, 1360, 1828
PscI	ACATGT	1 cut(s)	607
PshBI	ATTAAT	2 cut(s)	663, 2172
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	1319, 1676
PspGI	CCWGG	2 cut(s)	1319, 1676
PspN4I	GGNNCC	4 cut(s)	375, 533, 946, 2154
PspPI	GGNCC	2 cut(s)	373, 945
PstNI	CAGNNNCTG	1 cut(s)	1052
PsuI	RGATCY	1 cut(s)	1891
PsyI	GACNNNGTC	1 cut(s)	284
RruI	TCGCGA	1 cut(s)	321
RsaI	GTAC	7 cut(s)	79, 533, 914, 989, 1151, 2100, 2266
RsaNI	GTAC	7 cut(s)	78, 532, 913, 988, 1150, 2099, 2265
RseI	CAYNNNNRTG	4 cut(s)	1073, 2052, 2067, 2220
SacI	GAGCTC	1 cut(s)	327
SapI	GCTCTTC	2 cut(s)	1250, 1434
SatI	GCNGC	6 cut(s)	154, 166, 372, 1047, 1768, 1771
Sau3AI	GATC	4 cut(s)	429, 1891, 1981, 2212
Sau96I	GGNCC	2 cut(s)	373, 945
ScaI	AGTACT	1 cut(s)	989
SchI	GAGTC	5 cut(s)	275, 401, 857, 1361, 1828
ScrFI	CCNGG	3 cut(s)	1321, 1678, 2157
SduI	GDGCHC	2 cut(s)	327, 1141
SfaNI	GCATC	6 cut(s)	801, 844, 1117, 1441, 1600, 1699
SfcI	CTRYAG	2 cut(s)	1176, 1617
SinI	GGWCC	1 cut(s)	945
SmiMI	CAYNNNNRTG	4 cut(s)	1073, 2052, 2067, 2220
SmlI	CTYRAG	3 cut(s)	536, 1349, 1813
SmoI	CTYRAG	3 cut(s)	536, 1349, 1813
SspMI	CTAG	3 cut(s)	357, 1194, 1838
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	1319, 1676, 2155
StyI	CCWWGG	1 cut(s)	2133
TaaI	ACNGT	1 cut(s)	1576
TaiI	ACGT	3 cut(s)	195, 485, 941
TaqI	TCGA	9 cut(s)	107, 290, 342, 432, 792, 846, 851, 1381, 2116
TaqII	GACCGA	1 cut(s)	274
TatI	WGTACW	3 cut(s)	77, 987, 2264
TauI	GCSGC	3 cut(s)	156, 168, 374
TfiI	GAWTC	5 cut(s)	125, 334, 826, 1853, 2122
TscAI	CASTG	1 cut(s)	1267
TseFI	GTSAC	2 cut(s)	478, 2069
TseI	GCWGC	3 cut(s)	1046, 1767, 1770
Tsp45I	GTSAC	2 cut(s)	478, 2069
TspDTI	ATGAA	9 cut(s)	483, 785, 1028, 1057, 1238, 1311, 1344, 1866, 1889
TspGWI	ACGGA	2 cut(s)	399, 1090
TspRI	CASTG	1 cut(s)	1267
Tth111I	GACNNNGTC	1 cut(s)	284
Van91I	CCANNNNNTGG	1 cut(s)	564
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	945
VspI	ATTAAT	2 cut(s)	663, 2172
XapI	RAATTY	3 cut(s)	170, 801, 842
XceI	RCATGY	2 cut(s)	611, 1193
XmiI	GTMKAC	2 cut(s)	1479, 2283
XmnI	GAANNNNTTC	3 cut(s)	296, 338, 2195
XspI	CTAG	3 cut(s)	357, 1194, 1838
ZraI	GACGTC	1 cut(s)	939
ZrmI	AGTACT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.