Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012252

Physical Location & Seq

Genomic Coordinates Reverse (-)

5671465 .. 5672772

Gene Structure 1308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG068200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGTCGCGAGCTCTGCGAGAATCGGTTCGATGTGGGAGCTTCTAGTGTCGCAATGGCGGCCCCAAGAAACGGAGGTGAGTCTTTGGTCTTACCCAGTTTGAAACTCAAAGTTTTGATTGAAGCTATTAGGATTGTATTGGGGGTTGTTTATGATGAACGCTTTGTGACGTTTTCTTATGGCGGTCGTGTTAATATGGGGAGGCACACGGCCATTAGGTACCTTAAGAACTCTGTTGAAAATCCCAGTTGGTGGTTTAGTGTTAGCTTTAATCGGGATAAGTTTGAACAACGACATGTGAATAAGCTATGCTTGTTTATGCACGAGAAAATAGAGGATGAGGTTTTGACTAATATCATCAAGACATTGTTTGAATGTGGCGCGGTGAGAATTGAATTGGGTAGTTGTTGCTTTGGAAGAGGGTTTCCTCAGGAGAGTGGGTTGAGTTCAATTTTAATGAACATTTACTTTAATGGTTTCGATAAAGAAATTCAAGAGATGCGTCTGAAGAAAAATCAGGAGCATCCCAAATTCGAGTCGAATGAGCTTGTTTCAAAGGATGGTGTTTTCTATAAGCCTGTCAAGATATATGCGGTTAGGTACTTGGATGAGATATTAGTGATGACGTCTGGGTCCAAAATGTTGACTATGGATTTGAAGAACTGGGTTGTCAAGTACTTAGAAGGGAGTTTGGAATTGATGGTGGATAAGATAAAAACATCTATTCATAGTGCAGTGTCTGAGAAGATTGATTTCATGGGCATGGAATTACAGGCAGTTCCACCTTCGGTGTTGCACCCCCCTATGTCTGAAAAAGCTATTAGAGCACGAAAAAAGTACCTTAGACAGAAGGAAGTCAGAGCTATAGAATTGAAAAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0003964 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006278 GO:0006310 GO:0006314 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090615 GO:0140053 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

294

Amino Acids

33.73

Weight (kDa)

9.13

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04050 AT5G04050
fragaria_vesca	FvH4_6g25070
malus_domestica	MD12G1089700.v1.1
prunus_persica	Prupe.7G047200_v2.0.a1 Prupe.7G047200_v2.0.a1 Prupe.7G047200_v2.0.a1
pyrus_communis	pycom12g07560
rosa_chinensis	RchiOBHm_Chr2g0124831
rosa_laevigata	RLG00000018826
rosa_multiflora	Rmu_co8339159.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119620
rosa_rugosa	Rorug02G0253000
rosa_samantha	Rh2AG068200 Rh2AG312500 Rh2BG320700 Rh2CG300700 Rh2DG338000
rosa_wichuraiana	Rw2G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
AatII	GACGTC	1 cut(s)	629
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	252
AccII	CGCG	2 cut(s)	9, 383
AciI	CCGC	4 cut(s)	59, 183, 383, 593
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	489, 530
AcuI	CTGAAG	1 cut(s)	527
AcyI	GRCGYC	1 cut(s)	626
AfaI	GTAC	4 cut(s)	221, 602, 677, 839
AfiI	CCNNNNNNNGG	2 cut(s)	71, 252
AflII	CTTAAG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	295
AluBI	AGCT	9 cut(s)	13, 41, 125, 267, 307, 547, 818, 863, 880
AluI	AGCT	9 cut(s)	13, 41, 125, 267, 307, 547, 818, 863, 880
Alw21I	GWGCWC	2 cut(s)	15, 829
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	2 cut(s)	60, 210
ApoI	RAATTY	2 cut(s)	489, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
Asp700I	GAANNNNTTC	1 cut(s)	26
Asp718I	GGTACC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	61, 633
AsuHPI	GGTGA	2 cut(s)	89, 397
AvaII	GGWCC	1 cut(s)	633
AxyI	CCTNAGG	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	15
BauI	CACGAG	1 cut(s)	323
Bbv12I	GWGCWC	2 cut(s)	15, 829
BccI	CCATC	2 cut(s)	554, 694
BceAI	ACGGC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	864
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmcAI	AGTACT	1 cut(s)	677
Bme18I	GGWCC	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	61, 633
BmiI	GGNNCC	3 cut(s)	63, 221, 634
BmrI	ACTGGG	3 cut(s)	90, 240, 673
BmsI	GCATC	2 cut(s)	489, 532
BmuI	ACTGGG	3 cut(s)	90, 240, 673
BsaHI	GRCGYC	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 252
Bse1I	ACTGG	3 cut(s)	96, 246, 668
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	60
BseGI	GGATG	4 cut(s)	343, 523, 565, 613
BseLI	CCNNNNNNNGG	2 cut(s)	71, 252
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	443, 732
BseNI	ACTGG	3 cut(s)	96, 246, 668
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	2 cut(s)	9, 383
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	62, 212
BshNI	GGYRCC	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	15, 829
BslI	CCNNNNNNNGG	2 cut(s)	71, 252
BsnI	GGCC	2 cut(s)	62, 212
Bsp1286I	GDGCHC	2 cut(s)	15, 829
Bsp68I	TCGCGA	1 cut(s)	9
BspACI	CCGC	4 cut(s)	59, 183, 383, 593
BspANI	GGCC	2 cut(s)	62, 212
BspCNI	CTCAG	2 cut(s)	442, 733
BspFNI	CGCG	2 cut(s)	9, 383
BspLI	GGNNCC	3 cut(s)	63, 221, 634
BspT107I	GGYRCC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	3 cut(s)	96, 246, 668
BssNI	GRCGYC	1 cut(s)	626
BssSI	CACGAG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	412
BstACI	GRCGYC	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	4 cut(s)	429, 679, 741, 842
BstF5I	GGATG	4 cut(s)	343, 523, 565, 613
BstFNI	CGCG	2 cut(s)	9, 383
BstHHI	GCGC	1 cut(s)	383
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 59, 824
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	864
BstUI	CGCG	2 cut(s)	9, 383
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	62, 212
BtsCI	GGATG	4 cut(s)	343, 523, 565, 613
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
BtuMI	TCGCGA	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	11
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	61, 633
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	4 cut(s)	220, 601, 676, 838
CviAII	CATG	3 cut(s)	296, 757, 763
CviQI	GTAC	4 cut(s)	220, 601, 676, 838
DdeI	CTNAG	4 cut(s)	429, 679, 741, 842
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	633
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	527
Eco81I	CCTNAGG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	3 cut(s)	299, 760, 766
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	3 cut(s)	295, 756, 762
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	4 cut(s)	350, 510, 572, 620
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	62, 212
HgaI	GACGC	1 cut(s)	491
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	626
Hin1II	CATG	3 cut(s)	299, 760, 766
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HinfI	GANTC	3 cut(s)	22, 80, 536
HphI	GGTGA	2 cut(s)	89, 397
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	4 cut(s)	507, 742, 811, 860
Hpy188III	TCNNGA	7 cut(s)	8, 275, 361, 431, 494, 518, 583
Hpy8I	GTNNAC	1 cut(s)	645
HpyAV	CCTTC	3 cut(s)	677, 795, 844
HpyCH4IV	ACGT	2 cut(s)	170, 626
HpyCH4V	TGCA	3 cut(s)	322, 734, 796
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 59, 824
HpyF3I	CTNAG	4 cut(s)	429, 679, 741, 842
HpySE526I	ACGT	2 cut(s)	170, 626
Hsp92I	GRCGYC	1 cut(s)	626
Hsp92II	CATG	3 cut(s)	299, 760, 766
HspAI	GCGC	1 cut(s)	381
KpnI	GGTACC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	38, 520
LpnPI	CCDG	8 cut(s)	109, 259, 416, 503, 591, 615, 649, 758
LweI	GCATC	2 cut(s)	489, 532
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	170, 626
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	4 cut(s)	429, 520, 670, 757
MhlI	GDGCHC	2 cut(s)	15, 829
MluCI	AATT	8 cut(s)	390, 395, 450, 489, 530, 695, 767, 869
MlyI	GAGTC	2 cut(s)	89, 545
MnlI	CCTC	6 cut(s)	68, 195, 328, 334, 413, 438
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	5 cut(s)	192, 225, 270, 455, 471
MslI	CAYNNNNRTG	1 cut(s)	761
MspCI	CTTAAG	1 cut(s)	224
MvnI	CGCG	2 cut(s)	9, 383
MwoI	GCNNNNNNNGC	3 cut(s)	15, 59, 824
NlaIII	CATG	3 cut(s)	299, 760, 766
NlaIV	GGNNCC	3 cut(s)	63, 221, 634
NmuCI	GTSAC	1 cut(s)	166
NruI	TCGCGA	1 cut(s)	9
NspI	RCATGY	1 cut(s)	299
PciI	ACATGT	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	2 cut(s)	88, 544
PpsI	GAGTC	2 cut(s)	88, 544
PscI	ACATGT	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	63, 221, 634
PspPI	GGNCC	2 cut(s)	61, 633
PstNI	CAGNNNCTG	1 cut(s)	740
RruI	TCGCGA	1 cut(s)	9
RsaI	GTAC	4 cut(s)	221, 602, 677, 839
RsaNI	GTAC	4 cut(s)	220, 601, 676, 838
RseI	CAYNNNNRTG	1 cut(s)	761
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	5 cut(s)	192, 225, 270, 455, 471
SatI	GCNGC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	61, 633
ScaI	AGTACT	1 cut(s)	677
SchI	GAGTC	2 cut(s)	89, 545
SduI	GDGCHC	2 cut(s)	15, 829
SfaNI	GCATC	2 cut(s)	489, 532
SfcI	CTRYAG	1 cut(s)	864
SinI	GGWCC	1 cut(s)	633
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	8 cut(s)	390, 395, 450, 489, 530, 695, 767, 869
SsiI	CCGC	4 cut(s)	59, 183, 383, 593
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	15
TaiI	ACGT	2 cut(s)	173, 629
TaqI	TCGA	4 cut(s)	30, 480, 534, 539
TasI	AATT	8 cut(s)	390, 395, 450, 489, 530, 695, 767, 869
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	5 cut(s)	192, 225, 270, 455, 471
Tru9I	TTAA	5 cut(s)	192, 225, 270, 455, 471
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	4 cut(s)	171, 473, 716, 745
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	741
Van91I	CCANNNNNTGG	1 cut(s)	252
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	633
XapI	RAATTY	2 cut(s)	489, 530
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	45
ZraI	GACGTC	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.