Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012252

Physical Location & Seq

Genomic Coordinates Forward (+)

39902635 .. 39905435

Gene Structure 2801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG312500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGCTCATAAACCTCAGAAGAACAATAGCCATTCCATTTCACCAAAAACCCTCACTTTGCAAACTCCTCTCAACTCGTACACCAAATCCAAACTCCAACTCGACACAGCCTCTTTCAGAATCCCAACTCAAATCCTTAGTTCTCAGCCGCTACGCTCGCGGCAAATTCACCAACCTCCTCCAAAACGTCGTCGCTTTGCCCGCTGTTCTCCTCACCGCCTGCCAAAACCTCACCACCCCTCAAACCCAGAATGGCCTCCGCCTCTCCCTTCCCGACTCGGTCTCGAAGCGCTTCTCAATTCACGAAATGGGTCGCGAGCTCTGCGAGAATCGGTTCGATGTGGGAGCTTCTAGTGTCACAATGGCGGCCCCAAGAAACGGAGGTGAGTCTTTGGTCTTACCCAGTTTGAAACTCAAAGTTTTGATTGAAGCTATTAGGATTGTATTGGGGGTTGTTTATGATGAACGCTTTGTGACGTTTTCTTACGGCGGTCGTGTTAATATGGGGAGGCACACGGCCATTAGGTACCTTAAGAACTCTGTTGAAAATCCCAGTTGGTGGTTTAGCGTTAGCTTTAATCGGGATAAGTTTGAACAACGACATGTAAATAAGCTGTGCTTGTTTATGCACGAGAAAATAGAGGATGAGGTTTTGACTAATATCATCAAGACATTGTTTGAATGTGGCGCGGTGAGAATTGAATTGGGTAGTTGCTGCTTTGGAAGAGGGTTTCCTCAGGAGAGTGGGTTGAGTTCGATTTTAATGAACATTTACTTTAATGGTTTCGACAAAGAAATTCAAGAGATGCGTCTGAAGAAGAATAAGGAGCATCCCAAATTCGAGTCGAATGAGCTTGTTTCAAAGGATGGTGTTTTCTATAAGCCTGTCAAGATATATGCCGTTAGGTACTTGGATGAGATATTAGTGATGACGTCTGGGTCCAAAATGTTGACTATGGATTTGAAGAACTGGGTTCTCAACTACTTAGAAGGGAGTTTGGAATTGATGGTGGATAAGATTAAAACATCTATTCATAGTGCAGTGTCTGAGAAGATTGATTTCATGGGCATGGAATTACAGGCAGTTCCACCTTCGGTGTTGCACCCCCCTATGTCTGAAAAAGCTATTAGAGCACACAAAAAGTACCTTAGACAGAAGGAAGTCAGAGCTATAGAATTGAAAAATGCTAGAGAGAGGAACAGAAAAAAATTGGGAATGAAAATAATGAGCCATGTTTTTAAAAAGTTGAAGAGCAGTGATGGATTGAAATCTGAGTATCAAATTGAGAATGAAGTCAGAGAAATCTTTAGAACCTGGGCTGATGAAGTGGTGCAAGAGTTCCTTGAGTCATTGGATGAGCGTTGGGATTGGTATCGAAAGCTATCAGCAGGTAATTTTCTGTCTTTAAGACATATTAGACAACAATTGCCCGAAGAGCTTGTAGATGCTTATGATAAGTTCCAAGAGCAAGTAGACAAGCATTTGAACCCAGTCAGAGATAGAAAAGCAAGAGAGGAAGAAGAAAGGAGGGTAACAGAAGAAGCGGAGCAGAAATATGCCAAGAGAACAGTTGAGGATTTGACAAAGCTCTGTGTGAAAGCTGATGCGCCTATAGAAGTTTTGAGGAAGATGGTCAAGTTAATTGGGTTTACAAATCATATGGGTCGTCCCAGGCCAATCACTTTACTAACTGCTCTTGAAGATGCTGATATCATCAAGTGGTATGCAGGTGTAGGGAGAAGATTGCTTGATTTTTACTGCTGCTGCCATAACTTCAAGATGGTCAAAACTATTGTAACTTATCACTTAAGGTTCTCCTGTATCTTGACTCTAGCTGAAAAGCATGAATCCACCAAAAGTGAAGCCATGAAACATTATACTAAAGATTTGAAAGTCTTTGATATAAATGGAAATCAAGAAGTATACTTTCCCACAGAAAGAGAGGTAAAGATGATGGGAGATAAAAATCTTTCTGATCCAATACCTGTGGATGGGGCATTTTCTTTGGCTCTGATTAGATTAGCTTCTGATGAGCCTCCATATTCTTGTGTTGCTCATTTCTGTGACAGAACTGATACTATTGTTTATCGAGTACGATTATTGCAAAGTCAATTGAATCTGACCCCCGTGGATGATAAGAAATGGGTGCCGGGGATGGGTGCAATTAATGAGAGCCTCCATCTGAAATGCTTCCCTCTTTGTCCTGATCACATACATGATCTATACATGGGGAGCATTACCTTTCAAGATATTGATTGTACATCATTTGTGGATGTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0003964 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006278 GO:0006310 GO:0006314 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090615 GO:0140053 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

760

Amino Acids

87.59

Weight (kDa)

8.78

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Intron_maturas2	PF01348	535 - 659	1e-16	Type II intron maturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04050 AT5G04050
fragaria_vesca	FvH4_6g25070
malus_domestica	MD12G1089700.v1.1
prunus_persica	Prupe.7G047200_v2.0.a1 Prupe.7G047200_v2.0.a1 Prupe.7G047200_v2.0.a1
pyrus_communis	pycom12g07560
rosa_chinensis	RchiOBHm_Chr2g0124831
rosa_laevigata	RLG00000018826
rosa_multiflora	Rmu_co8339159.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119620
rosa_rugosa	Rorug02G0253000
rosa_samantha	Rh2AG068200 Rh2AG312500 Rh2BG320700 Rh2CG300700 Rh2DG338000
rosa_wichuraiana	Rw2G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1718
AasI	GACNNNNNNGTC	1 cut(s)	937
AatII	GACGTC	1 cut(s)	935
Acc36I	ACCTGC	2 cut(s)	1379, 1718
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	2 cut(s)	525, 2146
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccI	GTMKAC	3 cut(s)	1473, 1923, 2277
AccII	CGCG	3 cut(s)	159, 315, 689
AciI	CCGC	9 cut(s)	148, 159, 201, 216, 259, 365, 489, 689, 1544
AclWI	GGATC	1 cut(s)	1970
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	3 cut(s)	164, 795, 836
AcuI	CTGAAG	1 cut(s)	833
AcyI	GRCGYC	1 cut(s)	932
AfaI	GTAC	6 cut(s)	79, 527, 908, 1145, 2094, 2260
AfeI	AGCGCT	1 cut(s)	290
AfiI	CCNNNNNNNGG	4 cut(s)	377, 558, 1991, 2156
AflII	CTTAAG	2 cut(s)	530, 1807
AflIII	ACRYGT	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	1313, 1670
Alw21I	GWGCWC	2 cut(s)	321, 1135
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	1970
AlwNI	CAGNNNCTG	1 cut(s)	1046
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	4 cut(s)	253, 366, 516, 1673
ApeKI	GCWGC	3 cut(s)	714, 1761, 1764
ApoI	RAATTY	3 cut(s)	164, 795, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	943, 975
AseI	ATTAAT	1 cut(s)	2166
Asp700I	GAANNNNTTC	3 cut(s)	290, 332, 2189
Asp718I	GGTACC	1 cut(s)	525
AspLEI	GCGC	3 cut(s)	291, 689, 1609
AspS9I	GGNCC	2 cut(s)	367, 939
AsuC2I	CCSGG	1 cut(s)	2151
AsuHPI	GGTGA	6 cut(s)	32, 160, 205, 223, 395, 703
AvaII	GGWCC	1 cut(s)	939
AxyI	CCTNAGG	1 cut(s)	735
BaeI	ACNNNNGTAYC	2 cut(s)	2067, 2100
BanI	GGYRCC	2 cut(s)	525, 2146
BanII	GRGCYC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	629
Bbv12I	GWGCWC	2 cut(s)	321, 1135
BbvI	GCAGC	3 cut(s)	701, 1748, 1751
BccI	CCATC	9 cut(s)	860, 1000, 1253, 1624, 1774, 1948, 1985, 2149, 2187
BceAI	ACGGC	3 cut(s)	502, 531, 884
BciT130I	CCWGG	2 cut(s)	1315, 1672
BclI	TGATCA	1 cut(s)	2206
BcnI	CCSGG	1 cut(s)	2151
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	3 cut(s)	351, 1188, 1832
BfmI	CTRYAG	2 cut(s)	1170, 1611
BfoI	RGCGCY	1 cut(s)	292
BfrI	CTTAAG	2 cut(s)	530, 1807
BfuAI	ACCTGC	2 cut(s)	1379, 1718
BisI	GCNGC	6 cut(s)	148, 160, 366, 715, 1762, 1765
BlsI	GCNGC	6 cut(s)	149, 161, 367, 716, 1763, 1766
Bme1390I	CCNGG	3 cut(s)	1315, 1672, 2151
Bme18I	GGWCC	1 cut(s)	939
BmgT120I	GGNCC	2 cut(s)	367, 939
BmiI	GGNNCC	4 cut(s)	369, 527, 940, 2148
BmrFI	CCNGG	3 cut(s)	1315, 1672, 2151
BmrI	ACTGGG	4 cut(s)	396, 546, 979, 1484
BmsI	GCATC	5 cut(s)	795, 838, 1435, 1594, 1693
BmuI	ACTGGG	4 cut(s)	396, 546, 979, 1484
BpuEI	CTTGAG	1 cut(s)	1364
BpuMI	CCSGG	1 cut(s)	2151
BsaBI	GATNNNNATC	3 cut(s)	1267, 1371, 1965
BsaHI	GRCGYC	1 cut(s)	932
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	4 cut(s)	1314, 1670, 2127, 2150
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bsc4I	CCNNNNNNNGG	4 cut(s)	377, 558, 1991, 2156
Bse1I	ACTGG	4 cut(s)	402, 552, 974, 1490
Bse21I	CCTNAGG	1 cut(s)	735
Bse8I	GATNNNNATC	3 cut(s)	1267, 1371, 1965
BseBI	CCWGG	2 cut(s)	1315, 1672
BseDI	CCNNGG	4 cut(s)	1314, 1670, 2127, 2150
BseGI	GGATG	9 cut(s)	649, 829, 871, 919, 1360, 1996, 2137, 2160, 2278
BseJI	GATNNNNATC	3 cut(s)	1267, 1371, 1965
BseLI	CCNNNNNNNGG	4 cut(s)	377, 558, 1991, 2156
BseMII	CTCAG	5 cut(s)	28, 157, 749, 1038, 1263
BseNI	ACTGG	4 cut(s)	402, 552, 974, 1490
BseRI	GAGGAG	3 cut(s)	56, 167, 200
BseXI	GCAGC	3 cut(s)	701, 1748, 1751
BsgI	GTGCAG	1 cut(s)	1059
Bsh1236I	CGCG	3 cut(s)	159, 315, 689
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	4 cut(s)	255, 368, 518, 1675
BshNI	GGYRCC	2 cut(s)	525, 2146
BsiEI	CGRYCG	1 cut(s)	493
BsiHKAI	GWGCWC	2 cut(s)	321, 1135
BsiSI	CCGG	1 cut(s)	2150
BslFI	GGGAC	1 cut(s)	1653
BslI	CCNNNNNNNGG	4 cut(s)	377, 558, 1991, 2156
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	1653
BsnI	GGCC	4 cut(s)	255, 368, 518, 1675
Bso31I	GGTCTC	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	321, 1135
Bsp1407I	TGTACA	1 cut(s)	2258
Bsp143I	GATC	3 cut(s)	1975, 2206, 2218
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	9 cut(s)	148, 159, 201, 216, 259, 365, 489, 689, 1544
BspANI	GGCC	4 cut(s)	255, 368, 518, 1675
BspCNI	CTCAG	5 cut(s)	27, 156, 748, 1039, 1264
BspFNI	CGCG	3 cut(s)	159, 315, 689
BspLI	GGNNCC	4 cut(s)	369, 527, 940, 2148
BspMI	ACCTGC	2 cut(s)	1379, 1718
BspPI	GGATC	1 cut(s)	1970
BspQI	GCTCTTC	2 cut(s)	1244, 1428
BspT107I	GGYRCC	2 cut(s)	525, 2146
BspTI	CTTAAG	2 cut(s)	530, 1807
BspTNI	GGTCTC	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	2258
BsrI	ACTGG	4 cut(s)	402, 552, 974, 1490
BssECI	CCNNGG	4 cut(s)	1314, 1670, 2127, 2150
BssMI	GATC	3 cut(s)	1975, 2206, 2218
BssNAI	GTATAC	1 cut(s)	1924
BssNI	GRCGYC	1 cut(s)	932
BssSI	CACGAG	1 cut(s)	629
Bst1107I	GTATAC	1 cut(s)	1924
Bst2BI	CACGAG	1 cut(s)	629
Bst2UI	CCWGG	2 cut(s)	1315, 1672
Bst4CI	ACNGT	1 cut(s)	1570
Bst6I	CTCTTC	3 cut(s)	718, 1244, 1428
BstACI	GRCGYC	1 cut(s)	932
BstAFI	CTTAAG	2 cut(s)	530, 1807
BstAUI	TGTACA	1 cut(s)	2258
BstC8I	GCNNGC	4 cut(s)	157, 201, 220, 317
BstDEI	CTNAG	8 cut(s)	14, 136, 143, 735, 985, 1047, 1148, 1272
BstDSI	CCRYGG	1 cut(s)	2127
BstF5I	GGATG	9 cut(s)	649, 829, 871, 919, 1360, 1996, 2137, 2160, 2278
BstFNI	CGCG	3 cut(s)	159, 315, 689
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	3 cut(s)	291, 689, 1609
BstKTI	GATC	3 cut(s)	1978, 2209, 2221
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	3 cut(s)	1975, 2206, 2218
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 200, 321, 1130, 1435
BstNI	CCWGG	2 cut(s)	1315, 1672
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	3 cut(s)	1313, 1670, 2149
BstSFI	CTRYAG	2 cut(s)	1170, 1611
BstUI	CGCG	3 cut(s)	159, 315, 689
BstV1I	GCAGC	3 cut(s)	701, 1748, 1751
BstZ17I	GTATAC	1 cut(s)	1924
Bsu36I	CCTNAGG	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	255, 368, 518, 1675
BtgI	CCRYGG	1 cut(s)	2127
BtsCI	GGATG	9 cut(s)	649, 829, 871, 919, 1360, 1996, 2137, 2160, 2278
BtsI	GCAGTG	2 cut(s)	1047, 1261
BtsIMutI	CAGTG	2 cut(s)	1047, 1261
BtuMI	TCGCGA	1 cut(s)	315
BveI	ACCTGC	2 cut(s)	1379, 1718
Cac8I	GCNNGC	4 cut(s)	157, 201, 220, 317
CaiI	CAGNNNCTG	1 cut(s)	1046
CfoI	GCGC	3 cut(s)	291, 689, 1609
Cfr13I	GGNCC	2 cut(s)	367, 939
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	6 cut(s)	78, 526, 907, 1144, 2093, 2259
CspCI	CAANNNNNGTGG	2 cut(s)	1968, 2003
CviAII	CATG	8 cut(s)	602, 1063, 1069, 1232, 1844, 1867, 2216, 2227
CviQI	GTAC	6 cut(s)	78, 526, 907, 1144, 2093, 2259
DdeI	CTNAG	8 cut(s)	14, 136, 143, 735, 985, 1047, 1148, 1272
DpnI	GATC	3 cut(s)	1977, 2208, 2220
DpnII	GATC	3 cut(s)	1975, 2206, 2218
DraI	TTTAAA	1 cut(s)	1240
DrdI	GACNNNNNNGTC	1 cut(s)	937
DseDI	GACNNNNNNGTC	1 cut(s)	937
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	3 cut(s)	718, 1244, 1428
EarI	CTCTTC	3 cut(s)	718, 1244, 1428
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	1711
Eco47I	GGWCC	1 cut(s)	939
Eco47III	AGCGCT	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	833
Eco81I	CCTNAGG	1 cut(s)	735
EcoICRI	GAGCTC	1 cut(s)	319
EcoRII	CCWGG	2 cut(s)	1313, 1670
EcoRV	GATATC	1 cut(s)	1711
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	8 cut(s)	605, 1066, 1072, 1235, 1847, 1870, 2219, 2230
FalI	AAGNNNNNCTT	4 cut(s)	602, 634, 1326, 1358
FaqI	GGGAC	1 cut(s)	1653
FatI	CATG	8 cut(s)	601, 1062, 1068, 1231, 1843, 1866, 2215, 2226
FauI	CCCGC	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	1659
FbaI	TGATCA	1 cut(s)	2206
FblI	GTMKAC	3 cut(s)	1473, 1923, 2277
Fnu4HI	GCNGC	6 cut(s)	148, 160, 366, 715, 1762, 1765
FokI	GGATG	8 cut(s)	656, 816, 878, 926, 1367, 2003, 2144, 2167
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	6 cut(s)	148, 160, 366, 715, 1762, 1765
FspBI	CTAG	3 cut(s)	351, 1188, 1832
GlaI	GCGC	3 cut(s)	290, 688, 1608
GluI	GCNGC	6 cut(s)	148, 160, 366, 715, 1762, 1765
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	4 cut(s)	255, 368, 518, 1675
HapII	CCGG	1 cut(s)	2150
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	3 cut(s)	291, 689, 1609
Hin1I	GRCGYC	1 cut(s)	932
Hin1II	CATG	8 cut(s)	605, 1066, 1072, 1235, 1847, 1870, 2219, 2230
Hin6I	GCGC	3 cut(s)	289, 687, 1607
HinP1I	GCGC	3 cut(s)	289, 687, 1607
HincII	GTYRAC	1 cut(s)	951
HindII	GTYRAC	1 cut(s)	951
HinfI	GANTC	9 cut(s)	119, 275, 328, 386, 842, 1346, 1828, 1847, 2116
HpaII	CCGG	1 cut(s)	2150
HphI	GGTGA	6 cut(s)	32, 160, 205, 223, 395, 703
Hpy166II	GTNNAC	6 cut(s)	80, 951, 1474, 1650, 1924, 2278
Hpy8I	GTNNAC	6 cut(s)	80, 951, 1474, 1650, 1924, 2278
Hpy99I	CGWCG	2 cut(s)	191, 194
HpyAV	CCTTC	4 cut(s)	278, 983, 1101, 1150
HpyCH4III	ACNGT	1 cut(s)	1570
HpyCH4IV	ACGT	3 cut(s)	186, 476, 932
HpyCH4V	TGCA	8 cut(s)	60, 628, 1040, 1102, 1333, 1727, 2104, 2162
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 200, 321, 1130, 1435
HpyF3I	CTNAG	8 cut(s)	14, 136, 143, 735, 985, 1047, 1148, 1272
HpySE526I	ACGT	3 cut(s)	186, 476, 932
Hsp92I	GRCGYC	1 cut(s)	932
Hsp92II	CATG	8 cut(s)	605, 1066, 1072, 1235, 1847, 1870, 2219, 2230
HspAI	GCGC	3 cut(s)	289, 687, 1607
KpnI	GGTACC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	2206
Kzo9I	GATC	3 cut(s)	1975, 2206, 2218
LguI	GCTCTTC	2 cut(s)	1244, 1428
LmnI	GCTCC	4 cut(s)	344, 826, 1546, 2232
Lsp1109I	GCAGC	3 cut(s)	701, 1748, 1751
LweI	GCATC	5 cut(s)	795, 838, 1435, 1594, 1693
MaeI	CTAG	3 cut(s)	351, 1188, 1832
MaeII	ACGT	3 cut(s)	186, 476, 932
MaeIII	GTNAC	5 cut(s)	355, 472, 1531, 1795, 2063
MalI	GATC	3 cut(s)	1977, 2208, 2220
MboI	GATC	3 cut(s)	1975, 2206, 2218
MfeI	CAATTG	2 cut(s)	1424, 2111
MhlI	GDGCHC	2 cut(s)	321, 1135
MlyI	GAGTC	5 cut(s)	269, 395, 851, 1355, 1822
MmeI	TCCRAC	1 cut(s)	120
MroXI	GAANNNNTTC	3 cut(s)	290, 332, 2189
MslI	CAYNNNNRTG	3 cut(s)	1067, 2061, 2214
MspA1I	CMGCKG	1 cut(s)	203
MspCI	CTTAAG	2 cut(s)	530, 1807
MspI	CCGG	1 cut(s)	2150
MspR9I	CCNGG	3 cut(s)	1315, 1672, 2151
MunI	CAATTG	2 cut(s)	1424, 2111
MvaI	CCWGG	2 cut(s)	1315, 1672
MvnI	CGCG	3 cut(s)	159, 315, 689
MwoI	GCNNNNNNNGC	5 cut(s)	156, 200, 321, 1130, 1435
NciI	CCSGG	1 cut(s)	2151
NdeI	CATATG	1 cut(s)	1659
NdeII	GATC	3 cut(s)	1975, 2206, 2218
NlaIII	CATG	8 cut(s)	605, 1066, 1072, 1235, 1847, 1870, 2219, 2230
NlaIV	GGNNCC	4 cut(s)	369, 527, 940, 2148
NmuCI	GTSAC	3 cut(s)	355, 472, 2063
NruI	TCGCGA	1 cut(s)	315
NspI	RCATGY	1 cut(s)	605
PaqCI	CACCTGC	1 cut(s)	1718
PciI	ACATGT	1 cut(s)	601
PciSI	GCTCTTC	2 cut(s)	1244, 1428
PdmI	GAANNNNTTC	3 cut(s)	290, 332, 2189
PfeI	GAWTC	4 cut(s)	119, 328, 1847, 2116
PflFI	GACNNNGTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	558
PkrI	GCNGC	6 cut(s)	149, 161, 367, 716, 1763, 1766
PleI	GAGTC	5 cut(s)	269, 394, 850, 1354, 1822
PpsI	GAGTC	5 cut(s)	269, 394, 850, 1354, 1822
PscI	ACATGT	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	2166
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	1313, 1670
PspGI	CCWGG	2 cut(s)	1313, 1670
PspN4I	GGNNCC	4 cut(s)	369, 527, 940, 2148
PspPI	GGNCC	2 cut(s)	367, 939
PstNI	CAGNNNCTG	1 cut(s)	1046
PsyI	GACNNNGTC	1 cut(s)	278
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	6 cut(s)	79, 527, 908, 1145, 2094, 2260
RsaNI	GTAC	6 cut(s)	78, 526, 907, 1144, 2093, 2259
RseI	CAYNNNNRTG	3 cut(s)	1067, 2061, 2214
SacI	GAGCTC	1 cut(s)	321
SapI	GCTCTTC	2 cut(s)	1244, 1428
SatI	GCNGC	6 cut(s)	148, 160, 366, 715, 1762, 1765
Sau3AI	GATC	3 cut(s)	1975, 2206, 2218
Sau96I	GGNCC	2 cut(s)	367, 939
SchI	GAGTC	5 cut(s)	269, 395, 851, 1355, 1822
ScrFI	CCNGG	3 cut(s)	1315, 1672, 2151
SduI	GDGCHC	2 cut(s)	321, 1135
SfaNI	GCATC	5 cut(s)	795, 838, 1435, 1594, 1693
SfcI	CTRYAG	2 cut(s)	1170, 1611
SinI	GGWCC	1 cut(s)	939
SmiMI	CAYNNNNRTG	3 cut(s)	1067, 2061, 2214
SmlI	CTYRAG	3 cut(s)	530, 1343, 1807
SmoI	CTYRAG	3 cut(s)	530, 1343, 1807
SsiI	CCGC	9 cut(s)	148, 159, 201, 216, 259, 365, 489, 689, 1544
SspMI	CTAG	3 cut(s)	351, 1188, 1832
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	1313, 1670, 2149
TaaI	ACNGT	1 cut(s)	1570
TaiI	ACGT	3 cut(s)	189, 479, 935
TaqI	TCGA	9 cut(s)	101, 284, 336, 755, 786, 840, 845, 1375, 2089
TaqII	GACCGA	1 cut(s)	268
TatI	WGTACW	1 cut(s)	2258
TauI	GCSGC	3 cut(s)	150, 162, 368
TfiI	GAWTC	4 cut(s)	119, 328, 1847, 2116
TscAI	CASTG	2 cut(s)	1047, 1261
TseFI	GTSAC	3 cut(s)	355, 472, 2063
TseI	GCWGC	3 cut(s)	714, 1761, 1764
Tsp45I	GTSAC	3 cut(s)	355, 472, 2063
TspDTI	ATGAA	9 cut(s)	477, 779, 1022, 1051, 1232, 1305, 1338, 1860, 1883
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	1047, 1261
Tth111I	GACNNNGTC	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	558
Vha464I	CTTAAG	2 cut(s)	530, 1807
VpaK11BI	GGWCC	1 cut(s)	939
VspI	ATTAAT	1 cut(s)	2166
XapI	RAATTY	3 cut(s)	164, 795, 836
XceI	RCATGY	1 cut(s)	605
XmiI	GTMKAC	3 cut(s)	1473, 1923, 2277
XmnI	GAANNNNTTC	3 cut(s)	290, 332, 2189
XspI	CTAG	3 cut(s)	351, 1188, 1832
ZraI	GACGTC	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.