Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8408591.1

Orthogroup ID

OG0007959

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1245

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8408591.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1195 bp

atggacaatttgcgtagtcgtggtaacaacagaagcagtatcaaccagagttccttttccggagcaaggcttcacattaagaacttgttcttctcagagtcaccgtcactaaaactaaggctactgaatttggacaaggatcctgcttgcttctgtctctgggaaggtcaaccagttgatgctagccagaagaaatggactaccacagcatcacaccttactttgtctctcgaaacgtgtactgcatcagctggacttcagagttctcttgatgggacctcaggcttgtggagatgtgttgagctgaaagatgcttgcatagaagtagctatggtaactgctgatgggagcccattaacaaatgttcctcctcctggtggtattgtcaggatagggctagcttgtgaaaagtatctctcaaatacttctgttgaacagttgtattttgttttggatctttatgcgtactttggcagagttagtgaaaagatagttcttgttggaaaatatactagaccaaagacgagtacggatgatacgttcaaggggaagctaattgacaaggttcccaatgatacagcagttagtttaatggtgaataatcttcagctacgatttctggaatcatcttccatgcatgttgaaggaacgcctctagttcagtttgttgggcatgatctctttataagagttactcacagaactcttggtggtgcagttgctgtttcctccattatacgttgggatagcgttgaggtggactgtatagacagtgagggaaacttggcatctgagaatggcagagatttaatttctattgaaaatggtcatggtgttttggcgagtggaaatgggtatcctcaactaagacctgtcttttggatagatagccaagtaaaccattcatcaaatggtaaagctattgtagatcgatttcttgacataaacgtggaacatgtaattcctttaaatgaacaagatgtagagtgtcacagtttgaatgtgtcagcttgtatttctggcattcgcctaggtggcggaatgaactatgctgaatccttgctgcatcgctttggaatacttgaggctgatggtggtcctgggaaggggctatctaaagagttggagaatttacgagcaggccccctttcaaaaatttttgaaccatcacctttcattgttgattcaaaagagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chorein_N

Protein Analysis

398

Amino Acids

43.35

Weight (kDa)

5.63

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20720 AT3G20720
fragaria_vesca	FvH4_3g21780 FvH4_3g21780 FvH4_3g21780 FvH4_3g21780 FvH4_3g21780 FvH4_3g21780
malus_domestica	MD03G1211800.v1.1 MD11G1227200.v1.1
prunus_persica	Prupe.4G202100_v2.0.a1
pyrus_communis	pycom03g16050 pycom11g19980
rosa_chinensis	RchiOBHm_Chr5g0037331
rosa_laevigata	RLG00000033774
rosa_multiflora	Rmu_co8408591.1_g000001 Rmu_sc0005002.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043640
rosa_rugosa	Rorug05G0164100
rosa_samantha	Rh5AG253800 Rh5BG255800 Rh5CG288900 Rh5DG264200
rosa_wichuraiana	Rw5G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	686
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	1 cut(s)	1038
AclWI	GGATC	3 cut(s)	134, 147, 462
AcsI	RAATTY	3 cut(s)	127, 1129, 1155
AcuI	CTGAAG	2 cut(s)	242, 590
AfaI	GTAC	3 cut(s)	241, 467, 529
AfiI	CCNNNNNNNGG	4 cut(s)	66, 374, 377, 1106
AflIII	ACRYGT	2 cut(s)	236, 955
AgsI	TTSAA	8 cut(s)	434, 544, 644, 821, 1000, 1152, 1163, 1188
AjnI	CCWGG	2 cut(s)	373, 1099
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	8 cut(s)	251, 304, 329, 401, 553, 610, 920, 1010
AluI	AGCT	8 cut(s)	251, 304, 329, 401, 553, 610, 920, 1010
Alw26I	GTCTC	2 cut(s)	161, 231
AlwI	GGATC	3 cut(s)	134, 147, 462
AlwNI	CAGNNNCTG	1 cut(s)	722
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	1 cut(s)	1141
ApeKI	GCWGC	1 cut(s)	1063
ApoI	RAATTY	3 cut(s)	127, 1129, 1155
ArsI	GACNNNNNNTTYG	2 cut(s)	861, 893
Asp700I	GAANNNNTTC	1 cut(s)	86
AspA2I	CCTAGG	1 cut(s)	1030
AspS9I	GGNCC	3 cut(s)	276, 1097, 1142
AsuHPI	GGTGA	3 cut(s)	93, 607, 1161
AsuNHI	GCTAGC	2 cut(s)	182, 397
AvaII	GGWCC	2 cut(s)	276, 1097
AvrII	CCTAGG	1 cut(s)	1030
AxyI	CCTNAGG	1 cut(s)	280
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	1050
BccI	CCATC	4 cut(s)	266, 338, 1085, 1174
BciT130I	CCWGG	2 cut(s)	375, 1101
BciVI	GTATCC	1 cut(s)	867
BcoDI	GTCTC	2 cut(s)	161, 231
BfaI	CTAG	5 cut(s)	183, 398, 513, 656, 1031
BfuI	GTATCC	1 cut(s)	867
BglI	GCCNNNNNGGC	1 cut(s)	1035
BisI	GCNGC	1 cut(s)	1064
BlnI	CCTAGG	1 cut(s)	1030
BlsI	GCNGC	1 cut(s)	1065
Bme1390I	CCNGG	2 cut(s)	375, 1101
Bme18I	GGWCC	2 cut(s)	276, 1097
BmgT120I	GGNCC	3 cut(s)	276, 1097, 1142
BmiI	GGNNCC	5 cut(s)	141, 277, 350, 567, 1144
BmrFI	CCNGG	2 cut(s)	375, 1101
BmsI	GCATC	6 cut(s)	169, 218, 254, 301, 797, 1075
BmtI	GCTAGC	2 cut(s)	186, 401
BpuEI	CTTGAG	1 cut(s)	1103
Bsa29I	ATCGAT	1 cut(s)	931
BsaJI	CCNNGG	2 cut(s)	1030, 1100
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 374, 377, 1106
Bse1I	ACTGG	1 cut(s)	173
Bse21I	CCTNAGG	1 cut(s)	280
BseAI	TCCGGA	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	375, 1101
BseCI	ATCGAT	1 cut(s)	931
BseDI	CCNNGG	2 cut(s)	1030, 1100
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	4 cut(s)	66, 374, 377, 1106
BseMII	CTCAG	3 cut(s)	108, 294, 783
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	1050
BsgI	GTGCAG	1 cut(s)	735
BshFI	GGCC	1 cut(s)	1143
BshVI	ATCGAT	1 cut(s)	931
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	4 cut(s)	66, 374, 377, 1106
BsmAI	GTCTC	2 cut(s)	161, 231
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	1023
BsnI	GGCC	1 cut(s)	1143
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	139, 454, 676, 928
BspACI	CCGC	1 cut(s)	1038
BspANI	GGCC	1 cut(s)	1143
BspCNI	CTCAG	3 cut(s)	107, 293, 784
BspDI	ATCGAT	1 cut(s)	931
BspEI	TCCGGA	1 cut(s)	59
BspLI	GGNNCC	5 cut(s)	141, 277, 350, 567, 1144
BspOI	GCTAGC	2 cut(s)	186, 401
BspPI	GGATC	3 cut(s)	134, 147, 462
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	1030, 1100
BssMI	GATC	4 cut(s)	139, 454, 676, 928
BssT1I	CCWWGG	1 cut(s)	1030
Bst2UI	CCWGG	2 cut(s)	375, 1101
Bst4CI	ACNGT	5 cut(s)	105, 438, 764, 773, 995
BstC8I	GCNNGC	5 cut(s)	148, 184, 316, 399, 1141
BstDEI	CTNAG	5 cut(s)	94, 116, 280, 792, 866
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	4 cut(s)	142, 457, 679, 931
BstMAI	GTCTC	2 cut(s)	161, 231
BstMBI	GATC	4 cut(s)	139, 454, 676, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	1035
BstNI	CCWGG	2 cut(s)	375, 1101
BstNSI	RCATGY	2 cut(s)	641, 959
BstSCI	CCNGG	2 cut(s)	373, 1099
BstV1I	GCAGC	1 cut(s)	1050
BstX2I	RGATCY	2 cut(s)	139, 454
BstYI	RGATCY	2 cut(s)	139, 454
Bsu15I	ATCGAT	1 cut(s)	931
Bsu36I	CCTNAGG	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	867
BsuRI	GGCC	1 cut(s)	1143
BsuTUI	ATCGAT	1 cut(s)	931
BtgZI	GCGATG	1 cut(s)	1052
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	5 cut(s)	148, 184, 316, 399, 1141
CaiI	CAGNNNCTG	1 cut(s)	722
Cfr13I	GGNCC	3 cut(s)	276, 1097, 1142
ClaI	ATCGAT	1 cut(s)	931
Csp6I	GTAC	3 cut(s)	240, 466, 528
CviAII	CATG	5 cut(s)	634, 638, 674, 830, 956
CviQI	GTAC	3 cut(s)	240, 466, 528
DdeI	CTNAG	5 cut(s)	94, 116, 280, 792, 866
DpnI	GATC	4 cut(s)	141, 456, 678, 930
DpnII	GATC	4 cut(s)	139, 454, 676, 928
DraI	TTTAAA	1 cut(s)	969
EciI	GGCGGA	1 cut(s)	1053
Eco130I	CCWWGG	1 cut(s)	1030
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	2 cut(s)	276, 1097
Eco57I	CTGAAG	2 cut(s)	242, 590
Eco81I	CCTNAGG	1 cut(s)	280
EcoO109I	RGGNCCY	2 cut(s)	276, 1142
EcoRII	CCWGG	2 cut(s)	373, 1099
EcoT14I	CCWWGG	1 cut(s)	1030
EcoT22I	ATGCAT	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	1030
FaeI	CATG	5 cut(s)	637, 641, 677, 833, 959
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	5 cut(s)	633, 637, 673, 829, 955
Fnu4HI	GCNGC	1 cut(s)	1064
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	1064
FspBI	CTAG	5 cut(s)	183, 398, 513, 656, 1031
GluI	GCNGC	1 cut(s)	1064
HaeIII	GGCC	1 cut(s)	1143
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	5 cut(s)	637, 641, 677, 833, 959
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	4 cut(s)	98, 623, 1055, 1184
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	93, 607, 1161
Hpy166II	GTNNAC	4 cut(s)	170, 240, 760, 898
Hpy188I	TCNGA	3 cut(s)	97, 261, 793
Hpy188III	TCNNGA	6 cut(s)	60, 230, 269, 388, 620, 938
Hpy8I	GTNNAC	4 cut(s)	170, 240, 760, 898
HpyAV	CCTTC	3 cut(s)	158, 638, 1099
HpyCH4III	ACNGT	5 cut(s)	105, 438, 764, 773, 995
HpyCH4IV	ACGT	4 cut(s)	236, 539, 739, 948
HpyCH4V	TGCA	5 cut(s)	245, 318, 637, 716, 1066
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1035
HpyF3I	CTNAG	5 cut(s)	94, 116, 280, 792, 866
HpySE526I	ACGT	4 cut(s)	236, 539, 739, 948
Hsp92II	CATG	5 cut(s)	637, 641, 677, 833, 959
Kpn2I	TCCGGA	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	139, 454, 676, 928
LmnI	GCTCC	2 cut(s)	62, 348
Lsp1109I	GCAGC	1 cut(s)	1050
LweI	GCATC	6 cut(s)	169, 218, 254, 301, 797, 1075
MaeI	CTAG	5 cut(s)	183, 398, 513, 656, 1031
MaeII	ACGT	4 cut(s)	236, 539, 739, 948
MaeIII	GTNAC	6 cut(s)	23, 99, 105, 334, 691, 989
MalI	GATC	4 cut(s)	141, 456, 678, 930
MboI	GATC	4 cut(s)	139, 454, 676, 928
MboII	GAAGA	4 cut(s)	82, 202, 596, 621
MflI	RGATCY	2 cut(s)	139, 454
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	7 cut(s)	7, 127, 555, 810, 960, 1129, 1155
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	481, 1104
Mph1103I	ATGCAT	1 cut(s)	639
MroI	TCCGGA	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	5 cut(s)	78, 356, 590, 809, 968
MslI	CAYNNNNRTG	1 cut(s)	947
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	375, 1101
Mva1269I	GAATGC	1 cut(s)	1023
MvaI	CCWGG	2 cut(s)	375, 1101
MwoI	GCNNNNNNNGC	1 cut(s)	1035
NdeII	GATC	4 cut(s)	139, 454, 676, 928
NheI	GCTAGC	2 cut(s)	182, 397
NlaIII	CATG	5 cut(s)	637, 641, 677, 833, 959
NlaIV	GGNNCC	5 cut(s)	141, 277, 350, 567, 1144
NmuCI	GTSAC	3 cut(s)	99, 105, 989
NsiI	ATGCAT	1 cut(s)	639
NspI	RCATGY	2 cut(s)	641, 959
PciI	ACATGT	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PctI	GAATGC	1 cut(s)	1023
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	3 cut(s)	623, 1055, 1184
PkrI	GCNGC	1 cut(s)	1065
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	276
PscI	ACATGT	1 cut(s)	955
PsiI	TTATAA	1 cut(s)	686
Psp5II	RGGWCCY	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	373, 1099
PspGI	CCWGG	2 cut(s)	373, 1099
PspN4I	GGNNCC	5 cut(s)	141, 277, 350, 567, 1144
PspPI	GGNCC	3 cut(s)	276, 1097, 1142
PspPPI	RGGWCCY	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	2 cut(s)	139, 454
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	241, 467, 529
RsaNI	GTAC	3 cut(s)	240, 466, 528
RseI	CAYNNNNRTG	1 cut(s)	947
SaqAI	TTAA	5 cut(s)	78, 356, 590, 809, 968
SatI	GCNGC	1 cut(s)	1064
Sau3AI	GATC	4 cut(s)	139, 454, 676, 928
Sau96I	GGNCC	3 cut(s)	276, 1097, 1142
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	375, 1101
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	6 cut(s)	169, 218, 254, 301, 797, 1075
SinI	GGWCC	2 cut(s)	276, 1097
SmiMI	CAYNNNNRTG	1 cut(s)	947
SmlI	CTYRAG	1 cut(s)	1082
SmoI	CTYRAG	1 cut(s)	1082
Sse9I	AATT	7 cut(s)	7, 127, 555, 810, 960, 1129, 1155
SsiI	CCGC	1 cut(s)	1038
SspMI	CTAG	5 cut(s)	183, 398, 513, 656, 1031
StyD4I	CCNGG	2 cut(s)	373, 1099
StyI	CCWWGG	1 cut(s)	1030
TaaI	ACNGT	5 cut(s)	105, 438, 764, 773, 995
TaiI	ACGT	4 cut(s)	239, 542, 742, 951
TaqI	TCGA	2 cut(s)	231, 931
TasI	AATT	7 cut(s)	7, 127, 555, 810, 960, 1129, 1155
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	3 cut(s)	623, 1055, 1184
Tru1I	TTAA	5 cut(s)	78, 356, 590, 809, 968
Tru9I	TTAA	5 cut(s)	78, 356, 590, 809, 968
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	3 cut(s)	99, 105, 989
TseI	GCWGC	1 cut(s)	1063
Tsp45I	GTSAC	3 cut(s)	99, 105, 989
TspDTI	ATGAA	4 cut(s)	894, 987, 1058, 1165
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	1 cut(s)	778
VpaK11BI	GGWCC	2 cut(s)	276, 1097
XapI	RAATTY	3 cut(s)	127, 1129, 1155
XceI	RCATGY	2 cut(s)	641, 959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XmaJI	CCTAGG	1 cut(s)	1030
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	5 cut(s)	183, 398, 513, 656, 1031
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.