Rh5DG264200

N-terminal region of Chorein or VPS13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007959
Physical Location & Seq
Forward (+)
31776072 .. 31786463
10392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG264200.1

Sequence Viewer

Length: 3048 bp
ATGGAGACCCTTCTGGGTCGAGCGCTGGAGTATACTCTCAAGTACTGGCTCAAATCCTTCTCCAGAGACCAGTTCAAGTGGCAGGGACGGACGGTTCAGCTTTCCAATTTAGATATGGACGGCGATGCTTTGCACTCCAGCATGGGATTACCGCCGGCGCTGCACGTGACCACGGCCAGAGTCGGCAAACTTGTGATAGTGCTCCCATCATCGTTGAGCAATGTTCAAGTGGAACCGATAGTAGTGCAGATTGACAAGCTGGATTTGGTTTTAGAGGAGAATTCGGAGTTGGATGCGAGAAACAGTCCTAGCAGTTCGCCATCATCCACTAGCTCCGGGAAAGGAAGTGGTTATGGATTTGCTGATAAGATTGCAGATGGAATGACTATAGAGATTCACACAGTTAATCTTCTACTTGAAACTTGTGGGGGTGGTCGCCAAGGAGGGGCAGCTTGGGCATCTCCTCTGGCTTCTATCACTATACACAACCTTTTGCTGTATTCTACTAATGAAAATTGGCAGGTAGTAAATCTTAAGGAAGCGCGGGAGTTCTCCACCAACAAAAAGTTCATTTATGTTTTCAAAAAACTTGAGTGGGAATCTTTGTCCATCGATCTCCTGCCTCACCCTGATATGTTCACGGATGCTAATATAGCGAGCACTCAAAATGGAGGAACCCAGAGAGATGATGATGGTGCGAAGCGAGCTTTCTTTGGTGGGGAGCGCTTTATAGAAGGAATTTCAGGAGAAGCTTATATCACAGTGCAAAGGACTGAATTAAATAGTCCACTCGGGCTTGAGGTTCAGTTACATATCACAGAAGCCATTTGTCCTGCAATAAGTGAACCAGGACTACGTGCTCTTCTCCGCTTTATGACTGGATTATATGTCTGTCTGAATAGAGGAGATGTTGATTCAAATACTCAGCAGCGGTCAACTGAAGCAGCAGGCCGTTCTATCGTTTCAATTGTTGTAGATCACATATTTCTCTGCATTAAAGATACTGAATTCAAGCTTGAACTTTTGATGCAGTCACTCTTCTTTTCACGGACAAGTGTTTCTGATGGAGAAATTGACAATAACTTGTCTAAGGTTATGATTGGTGGGCTCTTTTTAAGGGATACCTATTCAAGACCTCCTTGCACCTTAGTGCAACCATCAATGGATGCCATTTCCGACGAACCTGTGCATGTTCCTGACTTTGGTAAGGACTTTTGCCCTCCCATATATCCTTTGGGAGCTCAGCAGTGGCAGTTGATCGTGGGTGTCCCTCTTTTATGCCTTCATTCTCTTCAGACCAAGCCCTCCCCTGTGCCTCCAGCTTTTGCTACACAAACAGTCATTAATTGCCAACCCCTGATGATTCATCTTCAGGAAGAATCCTGTTTGAGGATCTCTTCCTTCCTGGCCGATGGAATTGTTGTCAATCCCGGTGCTGTTTTGCCAGATTTCTCAGTAAATTCCTTGATTTTCACCCTCAAGGAATTAGATGTTACCGTTCCTTTGGACATGGACAATTTGCGTAGTCGTGGTAACAACAGAAGCAGTATCAACCAGAGTTCCTTTTCCGGAGCAAGGCTTCACATTAAGAACTTGTTCTTCTCAGAGTCACCGTCACTAAAACTAAGGCTACTGAATTTGGACAAGGATCCTGCTTGCTTCTGTCTCTGGGAAGGTCAACCAGTTGATGCTAGCCAGAAGAAATGGACTACCACAGCATCACACCTTACTTTGTCTCTCGAAACGTGTACTGCATCAGCTGGACTTCAGAGTTCTCTTGATGGGACCTCAGGCTTGTGGAGATGTGTTGAGCTGAAAGATGCTTGCATAGAAGTAGCTATGGTAACTGCTGATGGGAGCCCATTAACAAATGTTCCTCCTCCTGGTGGTATTGTCAGGATAGGGCTAGCTTGTGAAAAGTATCTCTCAAATACTTCTGTTGAACAGTTGTATTTTGTTTTGGATCTTTATGCGTACTTTGGCAGAGTTAGTGAAAAGATAGTTCTTGTTGGAAAATATACTAGACCAAAGACGAGTACGGATGATACGTTCAAGGGGAAGCTAATTGACAAGGTTCCCAATGATACAGCAGTTAGTTTAATGGTGAATAATCTTCAGCTACGATTTCTGGAATCATCTTCCATGCATGTTGAAGGAACGCCTCTAGTTCAGTTTGTTGGGCATGATCTCTTTATAAGAGTTACTCACAGAACTCTTGGTGGTGCAGTTGCTGTTTCCTCCATTATACGTTGGGATAGCGTTGAGGTGGACTGTATAGACAGTGAGGGAAACTTGGCATCTGAGAATGGCAGAGATTTAATTTCTATTGAAGATGGTCATGGTGTTTTGGCGAGTGGAAATGGGTATCCTCAACTAAGACCTGTCTTTTGGATAGATAGCCAAGTAAACCATTCATCAAATGGTAAAGCTATTGTAGATCGATTTCTTGACATAAACGTGGAACATGTAATTCCTTTAAATGAACAAGATGTAGAGTGTCACAGTTTGAATGTGTCAGCTTGTATTTCTGGCATTCGCCTAGGTGGCGGAATGAACTATGCTGAATCCTTGCTGCATCGCTTTGGAATACTTGAGGCTGATGGTGGTCCTGGGAAGGGGCTATCTAAAGAGTTGGAGAATTTACGAGCAGGCCCCCTTTCAAAAATTTTTGAACCATCACCTTTCATTGTTGATTCAAAAGAGGATGGAAGTTCAGGAGATGGGAAAGAGAGTGAGGTTTTGCACTTGGGAAAGCCAGATGATGTGAACGTGTCCATAGAATTGAAAAATTGGTTATTTGCTCTTGAAGGCGCACAGGAAATGGCAGTGTTTAGAAGTTCCTCCAATCAGGAGGGTGATAGCAGAGAAGAGAGGTCTTGGCACACTACATTCCACAATCTGCACCTAAAAGGAAAAAGCCGTCCAAAACAAATGATGAATGGCATTAGAAAGTCATACTGGACACCAAAATATCCTTTAGAATTGGTGACGGTAAGCATATCTCTCTCTTGCCTTGATCCCTATGTTTTTCATATCCTGTTATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chorein_N

Protein Analysis

1015

Amino Acids

111.47

Weight (kDa)

5.31

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BLTP3A_B PF24917 33 - 205 8.6e-12 Bridge-like lipid transfer protein family member 3A/B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2195
Acc36I ACCTGC 1 cut(s) 511
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 544
AccIII TCCGGA 1 cut(s) 1568
AciI CCGC 5 cut(s) 152, 544, 868, 931, 2547
AclWI GGATC 5 cut(s) 1400, 1643, 1656, 1971, 3011
AcoI YGGCCR 2 cut(s) 174, 1407
AcsI RAATTY 7 cut(s) 280, 738, 1007, 1459, 1636, 2638, 2664
AcuI CTGAAG 5 cut(s) 960, 1277, 1355, 1751, 2099
AcvI CACGTG 1 cut(s) 166
AfaI GTAC 4 cut(s) 44, 1750, 1976, 2038
AfeI AGCGCT 2 cut(s) 24, 725
AfiI CCNNNNNNNGG 7 cut(s) 445, 1202, 1389, 1575, 1883, 1886, 2615
AflII CTTAAG 1 cut(s) 533
AflIII ACRYGT 3 cut(s) 1745, 2464, 2769
AjnI CCWGG 4 cut(s) 847, 1404, 1882, 2608
AjuI GAANNNNNNNTTGG 4 cut(s) 272, 304, 551, 583
AleI CACNNNNGTG 1 cut(s) 1148
AloI GAACNNNNNNTCC 4 cut(s) 78, 110, 2033, 2065
Alw21I GWGCWC 4 cut(s) 204, 662, 862, 1243
Alw26I GTCTC 3 cut(s) 60, 1670, 1740
AlwI GGATC 5 cut(s) 1400, 1643, 1656, 1971, 3011
AlwNI CAGNNNCTG 1 cut(s) 2231
Ama87I CYCGRG 1 cut(s) 791
Aor13HI TCCGGA 1 cut(s) 1568
Aor51HI AGCGCT 2 cut(s) 24, 725
AoxI GGCC 4 cut(s) 174, 949, 1407, 2650
ApeKI GCWGC 5 cut(s) 160, 449, 928, 944, 2572
ApoI RAATTY 7 cut(s) 280, 738, 1007, 1459, 1636, 2638, 2664
ArsI GACNNNNNNTTYG 2 cut(s) 2370, 2402
AseI ATTAAT 1 cut(s) 1344
Asp700I GAANNNNTTC 1 cut(s) 1595
AspA2I CCTAGG 1 cut(s) 2539
AspLEI GCGC 5 cut(s) 25, 160, 544, 726, 2813
AspS9I GGNCC 3 cut(s) 1785, 2606, 2651
AsuC2I CCSGG 2 cut(s) 337, 1431
AsuHPI GGTGA 7 cut(s) 617, 1465, 1602, 2116, 2670, 2867, 2998
AsuNHI GCTAGC 2 cut(s) 1691, 1906
AvaI CYCGRG 1 cut(s) 791
AvaII GGWCC 2 cut(s) 1785, 2606
AvrII CCTAGG 1 cut(s) 2539
AxyI CCTNAGG 1 cut(s) 1789
BaeI ACNNNNGTAYC 2 cut(s) 2076, 2109
BamHI GGATCC 1 cut(s) 1648
BanII GRGCYC 3 cut(s) 1110, 1243, 1862
BbrPI CACGTG 1 cut(s) 166
Bbv12I GWGCWC 4 cut(s) 204, 662, 862, 1243
BbvI GCAGC 5 cut(s) 147, 461, 940, 956, 2559
BceAI ACGGC 4 cut(s) 136, 189, 936, 2904
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 4 cut(s) 849, 1406, 1884, 2610
BciVI GTATCC 2 cut(s) 1114, 2376
BcnI CCSGG 2 cut(s) 337, 1431
BcoDI GTCTC 3 cut(s) 60, 1670, 1740
BfaI CTAG 8 cut(s) 309, 330, 1692, 1907, 2022, 2165, 2540, 3046
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 3 cut(s) 26, 161, 727
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 511
BfuI GTATCC 2 cut(s) 1114, 2376
BglI GCCNNNNNGGC 1 cut(s) 2544
BisI GCNGC 5 cut(s) 161, 450, 929, 945, 2573
BlnI CCTAGG 1 cut(s) 2539
BlpI GCTNAGC 1 cut(s) 1242
BlsI GCNGC 5 cut(s) 162, 451, 930, 946, 2574
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 6 cut(s) 337, 849, 1406, 1431, 1884, 2610
Bme18I GGWCC 2 cut(s) 1785, 2606
BmeT110I CYCGRG 1 cut(s) 791
BmgT120I GGNCC 3 cut(s) 1785, 2606, 2651
BmiI GGNNCC 7 cut(s) 234, 676, 1650, 1786, 1859, 2076, 2653
BmrFI CCNGG 6 cut(s) 337, 849, 1406, 1431, 1884, 2610
BmtI GCTAGC 2 cut(s) 1695, 1910
BpmI CTGGAG 4 cut(s) 46, 47, 121, 1302
Bpu1102I GCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 5 cut(s) 23, 611, 818, 1463, 2612
BpuMI CCSGG 2 cut(s) 337, 1431
Bsa29I ATCGAT 2 cut(s) 612, 2440
BsaAI YACGTR 2 cut(s) 166, 857
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 171, 439, 2539, 2609
BsaWI WCCGGW 1 cut(s) 1568
Bsc4I CCNNNNNNNGG 7 cut(s) 445, 1202, 1389, 1575, 1883, 1886, 2615
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 5 cut(s) 50, 70, 883, 1682, 2963
Bse21I CCTNAGG 1 cut(s) 1789
Bse3DI GCAATG 1 cut(s) 226
BseAI TCCGGA 1 cut(s) 1568
BseBI CCWGG 4 cut(s) 849, 1406, 1884, 2610
BseCI ATCGAT 2 cut(s) 612, 2440
BseDI CCNNGG 4 cut(s) 171, 439, 2539, 2609
BseGI GGATG 6 cut(s) 298, 323, 649, 1171, 2047, 2710
BseLI CCNNNNNNNGG 7 cut(s) 445, 1202, 1389, 1575, 1883, 1886, 2615
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 6 cut(s) 938, 1256, 1467, 1617, 1803, 2292
BseNI ACTGG 5 cut(s) 50, 70, 883, 1682, 2963
BseRI GAGGAG 4 cut(s) 290, 453, 918, 1869
BseXI GCAGC 5 cut(s) 147, 461, 940, 956, 2559
BsgI GTGCAG 4 cut(s) 146, 266, 2244, 2885
Bsh1236I CGCG 1 cut(s) 544
BshFI GGCC 4 cut(s) 176, 951, 1409, 2652
BshVI ATCGAT 2 cut(s) 612, 2440
BsiHKAI GWGCWC 4 cut(s) 204, 662, 862, 1243
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 4 cut(s) 155, 336, 1431, 1569
BslFI GGGAC 3 cut(s) 99, 1253, 1798
BslI CCNNNNNNNGG 7 cut(s) 445, 1202, 1389, 1575, 1883, 1886, 2615
BsmAI GTCTC 3 cut(s) 60, 1670, 1740
BsmFI GGGAC 3 cut(s) 99, 1253, 1798
BsmI GAATGC 1 cut(s) 2532
BsnI GGCC 4 cut(s) 176, 951, 1409, 2652
Bso31I GGTCTC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 6 cut(s) 204, 662, 862, 1110, 1243, 1862
Bsp13I TCCGGA 1 cut(s) 1568
Bsp143I GATC 9 cut(s) 613, 976, 1257, 1392, 1648, 1963, 2185, 2437, 3016
Bsp1720I GCTNAGC 1 cut(s) 1242
BspACI CCGC 5 cut(s) 152, 544, 868, 931, 2547
BspANI GGCC 4 cut(s) 176, 951, 1409, 2652
BspCNI CTCAG 6 cut(s) 937, 1255, 1466, 1616, 1802, 2293
BspDI ATCGAT 2 cut(s) 612, 2440
BspEI TCCGGA 1 cut(s) 1568
BspFNI CGCG 1 cut(s) 544
BspLI GGNNCC 7 cut(s) 234, 676, 1650, 1786, 1859, 2076, 2653
BspMI ACCTGC 1 cut(s) 511
BspOI GCTAGC 2 cut(s) 1695, 1910
BspPI GGATC 5 cut(s) 1400, 1643, 1656, 1971, 3011
BspQI GCTCTTC 1 cut(s) 867
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 5 cut(s) 50, 70, 883, 1682, 2963
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 4 cut(s) 171, 439, 2539, 2609
BssMI GATC 9 cut(s) 613, 976, 1257, 1392, 1648, 1963, 2185, 2437, 3016
BssNAI GTATAC 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 439, 2539
Bst1107I GTATAC 1 cut(s) 33
Bst2UI CCWGG 4 cut(s) 849, 1406, 1884, 2610
Bst6I CTCTTC 5 cut(s) 867, 1043, 1296, 1402, 2862
BstAFI CTTAAG 1 cut(s) 533
BstBAI YACGTR 2 cut(s) 166, 857
BstC8I GCNNGC 9 cut(s) 156, 658, 705, 949, 1657, 1693, 1825, 1908, 2650
BstDSI CCRYGG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 1387
BstF5I GGATG 6 cut(s) 298, 323, 649, 1171, 2047, 2710
BstFNI CGCG 1 cut(s) 544
BstH2I RGCGCY 3 cut(s) 26, 161, 727
BstHHI GCGC 5 cut(s) 25, 160, 544, 726, 2813
BstKTI GATC 9 cut(s) 616, 979, 1260, 1395, 1651, 1966, 2188, 2440, 3019
BstMAI GTCTC 3 cut(s) 60, 1670, 1740
BstMBI GATC 9 cut(s) 613, 976, 1257, 1392, 1648, 1963, 2185, 2437, 3016
BstMWI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2544
BstNI CCWGG 4 cut(s) 849, 1406, 1884, 2610
BstNSI RCATGY 3 cut(s) 1193, 2150, 2468
BstSCI CCNGG 6 cut(s) 335, 847, 1404, 1429, 1882, 2608
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 1 cut(s) 544
BstV1I GCAGC 5 cut(s) 147, 461, 940, 956, 2559
BstX2I RGATCY 3 cut(s) 1392, 1648, 1963
BstYI RGATCY 3 cut(s) 1392, 1648, 1963
BstZ17I GTATAC 1 cut(s) 33
Bsu15I ATCGAT 2 cut(s) 612, 2440
Bsu36I CCTNAGG 1 cut(s) 1789
BsuI GTATCC 2 cut(s) 1114, 2376
BsuRI GGCC 4 cut(s) 176, 951, 1409, 2652
BsuTUI ATCGAT 2 cut(s) 612, 2440
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 2 cut(s) 138, 2561
BtsCI GGATG 6 cut(s) 298, 323, 649, 1171, 2047, 2710
BtsI GCAGTG 2 cut(s) 1253, 2832
BtsIMutI CAGTG 4 cut(s) 768, 1253, 2287, 2832
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 9 cut(s) 156, 658, 705, 949, 1657, 1693, 1825, 1908, 2650
CaiI CAGNNNCTG 1 cut(s) 2231
CfoI GCGC 5 cut(s) 25, 160, 544, 726, 2813
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 1785, 2606, 2651
ClaI ATCGAT 2 cut(s) 612, 2440
Csp6I GTAC 4 cut(s) 43, 1749, 1975, 2037
CviAII CATG 8 cut(s) 142, 1190, 1510, 2143, 2147, 2183, 2339, 2465
CviQI GTAC 4 cut(s) 43, 1749, 1975, 2037
DpnI GATC 9 cut(s) 615, 978, 1259, 1394, 1650, 1965, 2187, 2439, 3018
DpnII GATC 9 cut(s) 613, 976, 1257, 1392, 1648, 1963, 2185, 2437, 3016
DraI TTTAAA 1 cut(s) 2478
EaeI YGGCCR 2 cut(s) 174, 1407
Eam1104I CTCTTC 5 cut(s) 867, 1043, 1296, 1402, 2862
EarI CTCTTC 5 cut(s) 867, 1043, 1296, 1402, 2862
EciI GGCGGA 1 cut(s) 2562
Ecl136II GAGCTC 1 cut(s) 1241
Eco130I CCWWGG 2 cut(s) 439, 2539
Eco24I GRGCYC 3 cut(s) 1110, 1243, 1862
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 1785, 2606
Eco47III AGCGCT 2 cut(s) 24, 725
Eco53kI GAGCTC 1 cut(s) 1241
Eco57I CTGAAG 5 cut(s) 960, 1277, 1355, 1751, 2099
Eco72I CACGTG 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 1789
Eco88I CYCGRG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 1241
EcoNI CCTNNNNNAGG 1 cut(s) 1387
EcoO109I RGGNCCY 2 cut(s) 1785, 2651
EcoRI GAATTC 2 cut(s) 280, 1007
EcoRII CCWGG 4 cut(s) 847, 1404, 1882, 2608
EcoT14I CCWWGG 2 cut(s) 439, 2539
EcoT22I ATGCAT 1 cut(s) 2148
EcoT38I GRGCYC 3 cut(s) 1110, 1243, 1862
ErhI CCWWGG 2 cut(s) 439, 2539
FaeI CATG 8 cut(s) 145, 1193, 1513, 2146, 2150, 2186, 2342, 2468
FalI AAGNNNNNCTT 2 cut(s) 1123, 1155
FaqI GGGAC 3 cut(s) 99, 1253, 1798
FatI CATG 8 cut(s) 141, 1189, 1509, 2142, 2146, 2182, 2338, 2464
FauI CCCGC 1 cut(s) 537
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 5 cut(s) 161, 450, 929, 945, 2573
FokI GGATG 6 cut(s) 305, 310, 656, 1178, 2054, 2717
FriOI GRGCYC 3 cut(s) 1110, 1243, 1862
Fsp4HI GCNGC 5 cut(s) 161, 450, 929, 945, 2573
FspBI CTAG 8 cut(s) 309, 330, 1692, 1907, 2022, 2165, 2540, 3046
GlaI GCGC 5 cut(s) 24, 159, 543, 725, 2812
GluI GCNGC 5 cut(s) 161, 450, 929, 945, 2573
GsuI CTGGAG 4 cut(s) 46, 47, 121, 1302
HaeII RGCGCY 3 cut(s) 26, 161, 727
HaeIII GGCC 4 cut(s) 176, 951, 1409, 2652
HapII CCGG 4 cut(s) 155, 336, 1431, 1569
HhaI GCGC 5 cut(s) 25, 160, 544, 726, 2813
Hin1II CATG 8 cut(s) 145, 1193, 1513, 2146, 2150, 2186, 2342, 2468
Hin6I GCGC 5 cut(s) 23, 158, 542, 724, 2811
HinP1I GCGC 5 cut(s) 23, 158, 542, 724, 2811
HincII GTYRAC 2 cut(s) 936, 1679
HindII GTYRAC 2 cut(s) 936, 1679
HindIII AAGCTT 2 cut(s) 750, 1013
HpaII CCGG 4 cut(s) 155, 336, 1431, 1569
HphI GGTGA 7 cut(s) 617, 1465, 1602, 2116, 2670, 2867, 2998
Hpy188I TCNGA 8 cut(s) 286, 897, 1063, 1177, 1296, 1606, 1770, 2302
Hpy99I CGWCG 1 cut(s) 1181
HpyAV CCTTC 9 cut(s) 20, 67, 728, 1292, 1411, 1667, 2147, 2608, 2801
HpyCH4IV ACGT 7 cut(s) 165, 856, 1745, 2048, 2248, 2457, 2769
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2544
HpySE526I ACGT 7 cut(s) 165, 856, 1745, 2048, 2248, 2457, 2769
Hsp92II CATG 8 cut(s) 145, 1193, 1513, 2146, 2150, 2186, 2342, 2468
HspAI GCGC 5 cut(s) 23, 158, 542, 724, 2811
Kpn2I TCCGGA 1 cut(s) 1568
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Kzo9I GATC 9 cut(s) 613, 976, 1257, 1392, 1648, 1963, 2185, 2437, 3016
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 6 cut(s) 207, 338, 721, 1238, 1571, 1857
Lsp1109I GCAGC 5 cut(s) 147, 461, 940, 956, 2559
MaeI CTAG 8 cut(s) 309, 330, 1692, 1907, 2022, 2165, 2540, 3046
MaeII ACGT 7 cut(s) 165, 856, 1745, 2048, 2248, 2457, 2769
MalI GATC 9 cut(s) 615, 978, 1259, 1394, 1650, 1965, 2187, 2439, 3018
MboI GATC 9 cut(s) 613, 976, 1257, 1392, 1648, 1963, 2185, 2437, 3016
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 3 cut(s) 1392, 1648, 1963
MhlI GDGCHC 6 cut(s) 204, 662, 862, 1110, 1243, 1862
MlyI GAGTC 2 cut(s) 189, 1616
MmeI TCCRAC 4 cut(s) 270, 1200, 1990, 2613
Mph1103I ATGCAT 1 cut(s) 2148
MreI CGCCGGCG 1 cut(s) 154
MroI TCCGGA 1 cut(s) 1568
MroNI GCCGGC 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 1595
MslI CAYNNNNRTG 2 cut(s) 1148, 2456
MspA1I CMGCKG 2 cut(s) 931, 1760
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 4 cut(s) 155, 336, 1431, 1569
MspR9I CCNGG 6 cut(s) 337, 849, 1406, 1431, 1884, 2610
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 1 cut(s) 2532
MvaI CCWGG 4 cut(s) 849, 1406, 1884, 2610
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2544
NaeI GCCGGC 1 cut(s) 156
NciI CCSGG 2 cut(s) 337, 1431
NdeII GATC 9 cut(s) 613, 976, 1257, 1392, 1648, 1963, 2185, 2437, 3016
NgoMIV GCCGGC 1 cut(s) 154
NheI GCTAGC 2 cut(s) 1691, 1906
NlaIII CATG 8 cut(s) 145, 1193, 1513, 2146, 2150, 2186, 2342, 2468
NlaIV GGNNCC 7 cut(s) 234, 676, 1650, 1786, 1859, 2076, 2653
NmuCI GTSAC 6 cut(s) 166, 1032, 1608, 1614, 2498, 2986
NsiI ATGCAT 1 cut(s) 2148
NspI RCATGY 3 cut(s) 1193, 2150, 2468
OliI CACNNNNGTG 1 cut(s) 1148
PciI ACATGT 1 cut(s) 2464
PciSI GCTCTTC 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 2045
PctI GAATGC 1 cut(s) 2532
PdiI GCCGGC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 1595
PfeI GAWTC 8 cut(s) 394, 599, 914, 1363, 1379, 2132, 2564, 2693
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 5 cut(s) 162, 451, 930, 946, 2574
PleI GAGTC 2 cut(s) 188, 1615
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
PpsI GAGTC 2 cut(s) 188, 1615
Ppu21I YACGTR 2 cut(s) 166, 857
PpuMI RGGWCCY 1 cut(s) 1785
PscI ACATGT 1 cut(s) 2464
PshBI ATTAAT 1 cut(s) 1344
PsiI TTATAA 1 cut(s) 2195
Psp124BI GAGCTC 1 cut(s) 1243
Psp5II RGGWCCY 1 cut(s) 1785
Psp6I CCWGG 4 cut(s) 847, 1404, 1882, 2608
PspCI CACGTG 1 cut(s) 166
PspGI CCWGG 4 cut(s) 847, 1404, 1882, 2608
PspN4I GGNNCC 7 cut(s) 234, 676, 1650, 1786, 1859, 2076, 2653
PspPI GGNCC 3 cut(s) 1785, 2606, 2651
PspPPI RGGWCCY 1 cut(s) 1785
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PstNI CAGNNNCTG 1 cut(s) 2231
PsuI RGATCY 3 cut(s) 1392, 1648, 1963
PvuII CAGCTG 1 cut(s) 1760
RsaI GTAC 4 cut(s) 44, 1750, 1976, 2038
RsaNI GTAC 4 cut(s) 43, 1749, 1975, 2037
RseI CAYNNNNRTG 2 cut(s) 1148, 2456
SacI GAGCTC 1 cut(s) 1243
SapI GCTCTTC 1 cut(s) 867
SatI GCNGC 5 cut(s) 161, 450, 929, 945, 2573
Sau3AI GATC 9 cut(s) 613, 976, 1257, 1392, 1648, 1963, 2185, 2437, 3016
Sau96I GGNCC 3 cut(s) 1785, 2606, 2651
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 2 cut(s) 189, 1616
ScrFI CCNGG 6 cut(s) 337, 849, 1406, 1431, 1884, 2610
SduI GDGCHC 6 cut(s) 204, 662, 862, 1110, 1243, 1862
SfcI CTRYAG 1 cut(s) 387
SgrAI CRCCGGYG 1 cut(s) 154
SinI GGWCC 2 cut(s) 1785, 2606
SmiMI CAYNNNNRTG 2 cut(s) 1148, 2456
SmlI CTYRAG 6 cut(s) 38, 533, 590, 797, 1478, 2591
SmoI CTYRAG 6 cut(s) 38, 533, 590, 797, 1478, 2591
SsiI CCGC 5 cut(s) 152, 544, 868, 931, 2547
SspMI CTAG 8 cut(s) 309, 330, 1692, 1907, 2022, 2165, 2540, 3046
SstI GAGCTC 1 cut(s) 1243
StyD4I CCNGG 6 cut(s) 335, 847, 1404, 1429, 1882, 2608
StyI CCWWGG 2 cut(s) 439, 2539
TaiI ACGT 7 cut(s) 168, 859, 1748, 2051, 2251, 2460, 2772
TaqI TCGA 4 cut(s) 19, 612, 1740, 2440
TatI WGTACW 2 cut(s) 42, 1748
TfiI GAWTC 8 cut(s) 394, 599, 914, 1363, 1379, 2132, 2564, 2693
TscAI CASTG 4 cut(s) 768, 1253, 2287, 2832
TseFI GTSAC 6 cut(s) 166, 1032, 1608, 1614, 2498, 2986
TseI GCWGC 5 cut(s) 160, 449, 928, 944, 2572
Tsp45I GTSAC 6 cut(s) 166, 1032, 1608, 1614, 2498, 2986
TspGWI ACGGA 4 cut(s) 103, 656, 1063, 2054
TspRI CASTG 4 cut(s) 768, 1253, 2287, 2832
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 2 cut(s) 1785, 2606
VspI ATTAAT 1 cut(s) 1344
XagI CCTNNNNNAGG 1 cut(s) 1387
XapI RAATTY 7 cut(s) 280, 738, 1007, 1459, 1636, 2638, 2664
XceI RCATGY 3 cut(s) 1193, 2150, 2468
XcmI CCANNNNNNNNNTGG 3 cut(s) 112, 1231, 2417
XmaJI CCTAGG 1 cut(s) 2539
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 1595
XspI CTAG 8 cut(s) 309, 330, 1692, 1907, 2022, 2165, 2540, 3046
ZrmI AGTACT 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 2148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.