Rh5CG288900

N-terminal region of Chorein or VPS13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007959
Physical Location & Seq
Forward (+)
31639319 .. 31649852
10534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG288900.1

Sequence Viewer

Length: 3351 bp
ATGGAGACCCTTCTGGGTCGAGCGCTGGAGTATACTCTCAAGTACTGGCTCAAATCCTTCTCCAGAGACCAGTTCAAGTGGCAGGGACGGACGGTTCAGCTTTCCAATTTAGATATGGACGGCGATGCTTTGCACTCCAGCATGGGATTACCGCCGGCGCTGCACGTGACCACGGCCAGAGTCGGCAAACTTGTGATAGTGCTCCCATCATCTTTGAGCAATGTTCAAGTGGAACCGATAGTAGTGCAGATTGACAAGCTGGATTTGGTTTTAGAGGAGAATTCGGAGTTGGATGCGAGAAACAGTCCGAGCAGTTCGCCATCATCCACTAGCTCCGGGAAAGGAAGTGGTTATGGATTTGCTGATAAGATTGCAGATGGAATGACTATAGAGATTCACACAGTTAATCTTCTACTTGAAACTCGTGGGGGTGGTCGCCAAGGAGGGGCAGCTTGGGCATCTCCTCTGGCTTCTATCACTATACGCAACCTTTTGCTGTATTCTACTAATGAAAATTGGCAGGTAGTAAATCTTAAGGAAGCACGGGAGTTCTCCACCAACAAAAATTTCATTTATGTTTTCAAAAAAATTGAGTGGGAATCTTTGTCCATCGATCTCCTGCCTCACCCTGATATGTTCACGGATGCTAATATAGCGAGCACTCAAAATGGAGGAACCCAGAGAGATGATGATGGTGCAAAGCGAGCTTTCTTTGGTGGGGAGCGCTTTATAGAAGGAATTTCAGGAGAAGCTTATATCACAGTGCAAAGGACTGAATTAAATAGTCCACTCGGGCTTGAGGTTCAGTTACATATCACAGAAGCCATTTGTCCTGCAATAAGTGAACCAGGACTACGTGCTCTTCTCCGCTTTATGACTGGATTATATGTCTGTCTGAATAGAGGAGATGTTGATTCAAACACTCAGCAGCGGTCAACTGAAGCAGCAGGCCGTTCTATCGTTTCAATTGTTGTAGATCACATATTTCTCTGCATTAAAGATACTGAATTCAAGCTTGAACTTTTGATGCAGTCACTCTTCTTTTCACGGACAAGTGTTTCTGATGGAGAAATTGACAATAACTTGTCTAAGGTTATGATTGGTGGGCTCTTTTTAAGGGATACCTATTCAAGACCTCCTTGCACCTTAGTGCAACCATCAATGGATGCCATTTCCGAAGAACCTGTGCATGTTCCTGACTTTGGTAAGGACTTTTGCCCTCCCATATATCCTTTGGGATCTCAGCAGTGGCAGTTGATCGTGGGTGTCCCTCTTTTATGCCTTCATTCTCTTCAGACCAAGCCCTCCCCTGTGCCTCCAGCTTTTGCTACACAAACAGTCATTGATTGCCAACCCCTGATGATTCATCTTCAGGAAGGATCCTGTTTGAGGATCTCTTCCTTCCTGGCCGATGGAATTGTTGTCAATCCCGGTGCTGTTTTACCAGATTTCTCAGTAAATTCCTTGATTTTCACCCTCAAGGAATTAGATGTTACTGTTCCCTTGGACGTGGACAATTTGCGTAGTCATGGTAACAACAGGAGCAGTATCAACCAGAGTTCCTTTTCTGGAGCAAGGCTTCACATTGAGAACTTGTTCTTCTCAGAGTCACCTTCACTAAAACTAAGGCTACTGAATTTGGACAAGGATCCTGCTTGCTTCTGTCTCTGGGAAGGTCAACCAGTTGATGCTAGCCAGAAGAAATGGACTACTAGAGCATCACACCTTACTTTGTCTCTCGAAACGTGTACTGCGTCAGCTGGACTTCAGAGTTCTCTTGACGGGACCTCAGGCTTGTGGAGATGTGTTGAGCTGAAAGATGCTTGCATAGAAGTAGCTATGGTAACCGCTGATGGGAGCCCATTAACAAATGTTCCTCCTCCTGGTGGTATTGTCAGGATAGGGCTAGCTTGTGAAAAGTATCTCTCAAATACTTCTGTTGAACAGTTGTATTTTGTTTTGGATCTTTACACGTACTTTGGCAGAGTTAGTGAAAAGATAGTTCTTGTTGGAAGATATACTAGACCAAAGATGAGTACGGATGATACGTTCAAGGGGAAGCTAATTGATAAGGTTCCCAATGATACAGCAGTTAGTTTAGTGGTGAATAATCTTCAGCTACGATTTCTGGAATCATCTTCCATGCATATTGAAGGAATGCCTCTAGTTCAGTTTGTTGGGCATGATCTCTTTATAAGAGTTACTCACAGAACTCTTGGTGGTGCAGTTGCTGTTTCCTCCACTATACGTTGGGATAGTGTTGAGGTGGACTGCGTAGACAGTGAGGGAAACTTGGCATGTGAGAATGGCAGAGATTTAATTTCTATTGAAAATGGTCATGGTTTTTTGGCGAGTGGAAATGGGTATCCTCAACTAAGACCTGTCTTTTGGATACATAACCAAATAAACCATTCATCAAATCGTAAAGCTATTGTAGATCGATTTCTTGACATAAGCGTGGAACATGTAATTCCTTTAAATGAACAAGATGTAGAGTGTCATAGTTTGAATGTGTCGGCTTGTATTTCTGGCATTCGCCTGGGTGGCGGAATGAACTATGCTGAATCCTTGCTGCATCGCTTTGGAATACTTGACGCTGATGGTGGTCCTGGGAAGGGGCTATCTAAAGAGTTGGAGAATTTACGAGCAGGCCCCCTTTCAAAACTTTTCGAACCATCACCTCTCATTGTTGATTCAAAAGAGGATGGAAGTTCAGGAGATGGGAAAGAGAGTGAGGTTTTGCACTGGGGAAAGCCAGATGATGTGAGCGTGTCCATAGAATTGAAAAATTGGTTATTTGCTCTTGAAGGTGCACAGGAAATGGCAGTGTTTAGAAGTTCCTACAATCAGGAGGGTGTGAGCAGAGAAGAGAGGTCTTGGCACACAACATTCCACAATCTGCACCTAAAAGGAAAAAGCAGTCCAAAACAAATGATGAATGGCATTAGAAAGTCATACAGGACACCAAAATATCCTTTAGAATTGGTGACGATTGGTGTGGAAGGCTTGCAGATATTGAAACCACATGCCCACAACTATCATAATCCTGCTGTCTCACATGTGAATGGTACCAAGGAATCTGCAGGTGTAAATCTTGAACTTCGCCTGGTGACAATGGATGACAGTGTTGATCATGAAACGGTGGAATGGGTTGTAGAAAATGTGAAATTCTCTGTTGAGCAACCGATTGAGGCGGTTGTGTCTAAGGATGAGCTGCAACATCTTGTTTTATTGTGCAAGTCGGAAGTTGACTCAATGGGTCGAATAACAGCTGGAATTCTGCGGCTATTTAAGTTGGAGGAGACCATAGGCCAGGCTGCTATGGATCAACTGACCAACCTTGGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chorein_N

Protein Analysis

1116

Amino Acids

122.83

Weight (kDa)

5.35

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BLTP3A_B PF24917 33 - 205 1.4e-12 Bridge-like lipid transfer protein family member 3A/B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2195
AarI CACCTGC 1 cut(s) 3074
Acc36I ACCTGC 2 cut(s) 511, 3074
Acc65I GGTACC 1 cut(s) 3068
AccB1I GGYRCC 1 cut(s) 3068
AccI GTMKAC 2 cut(s) 32, 2277
AciI CCGC 7 cut(s) 152, 868, 931, 1848, 2547, 3194, 3283
AclWI GGATC 8 cut(s) 1246, 1374, 1387, 1400, 1643, 1656, 1971, 3333
AcoI YGGCCR 2 cut(s) 174, 1407
AcsI RAATTY 9 cut(s) 280, 565, 738, 1007, 1459, 1636, 2638, 3167, 3276
AcuI CTGAAG 5 cut(s) 960, 1277, 1355, 1751, 2099
AcvI CACGTG 1 cut(s) 166
AfaI GTAC 5 cut(s) 44, 1750, 1976, 2038, 3070
AfeI AGCGCT 2 cut(s) 24, 725
AfiI CCNNNNNNNGG 7 cut(s) 445, 1202, 1389, 1854, 1883, 1886, 2615
AflII CTTAAG 1 cut(s) 533
AflIII ACRYGT 4 cut(s) 1745, 1971, 2464, 3058
AjiI CACGTC 1 cut(s) 1510
AjnI CCWGG 7 cut(s) 847, 1404, 1882, 2538, 2608, 3105, 3312
AjuI GAANNNNNNNTTGG 4 cut(s) 272, 304, 551, 583
AleI CACNNNNGTG 1 cut(s) 1148
AloI GAACNNNNNNTCC 4 cut(s) 78, 110, 2033, 2065
Alw21I GWGCWC 4 cut(s) 204, 662, 862, 2815
Alw26I GTCTC 5 cut(s) 60, 1670, 1740, 3058, 3296
Alw44I GTGCAC 1 cut(s) 2811
AlwI GGATC 8 cut(s) 1246, 1374, 1387, 1400, 1643, 1656, 1971, 3333
AlwNI CAGNNNCTG 1 cut(s) 2231
Ama87I CYCGRG 1 cut(s) 791
Aor51HI AGCGCT 2 cut(s) 24, 725
AoxI GGCC 5 cut(s) 174, 949, 1407, 2650, 3310
ApaLI GTGCAC 1 cut(s) 2811
ApeKI GCWGC 7 cut(s) 160, 449, 928, 944, 2572, 3214, 3317
ApoI RAATTY 9 cut(s) 280, 565, 738, 1007, 1459, 1636, 2638, 3167, 3276
ArsI GACNNNNNNTTYG 2 cut(s) 2370, 2402
Asp700I GAANNNNTTC 1 cut(s) 1595
Asp718I GGTACC 1 cut(s) 3068
AspLEI GCGC 3 cut(s) 25, 160, 726
AspS9I GGNCC 3 cut(s) 1785, 2606, 2651
AsuC2I CCSGG 2 cut(s) 337, 1431
AsuHPI GGTGA 7 cut(s) 617, 1465, 1602, 2116, 2670, 2998, 3121
AsuII TTCGAA 1 cut(s) 2670
AsuNHI GCTAGC 2 cut(s) 1691, 1906
AvaI CYCGRG 1 cut(s) 791
AvaII GGWCC 2 cut(s) 1785, 2606
AxyI CCTNAGG 1 cut(s) 1789
BaeGI GKGCMC 1 cut(s) 2815
BaeI ACNNNNGTAYC 2 cut(s) 2076, 2109
BamHI GGATCC 2 cut(s) 1379, 1648
BanI GGYRCC 1 cut(s) 3068
BanII GRGCYC 2 cut(s) 1110, 1862
BauI CACGAG 1 cut(s) 423
BbrPI CACGTG 1 cut(s) 166
Bbv12I GWGCWC 4 cut(s) 204, 662, 862, 2815
BbvI GCAGC 7 cut(s) 147, 461, 940, 956, 2559, 3201, 3304
BceAI ACGGC 3 cut(s) 136, 189, 936
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 7 cut(s) 849, 1406, 1884, 2540, 2610, 3107, 3314
BciVI GTATCC 3 cut(s) 1114, 2376, 2385
BclI TGATCA 1 cut(s) 3130
BcnI CCSGG 2 cut(s) 337, 1431
BcoDI GTCTC 5 cut(s) 60, 1670, 1740, 3058, 3296
BfaI CTAG 6 cut(s) 330, 1692, 1713, 1907, 2022, 2165
BfmI CTRYAG 2 cut(s) 387, 3081
BfoI RGCGCY 3 cut(s) 26, 161, 727
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 2 cut(s) 511, 3074
BfuI GTATCC 3 cut(s) 1114, 2376, 2385
BglI GCCNNNNNGGC 1 cut(s) 2544
BisI GCNGC 8 cut(s) 161, 450, 929, 945, 2573, 3215, 3284, 3318
BlsI GCNGC 8 cut(s) 162, 451, 930, 946, 2574, 3216, 3285, 3319
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 9 cut(s) 337, 849, 1406, 1431, 1884, 2540, 2610, 3107, 3314
Bme18I GGWCC 2 cut(s) 1785, 2606
BmeT110I CYCGRG 1 cut(s) 791
BmgBI CACGTC 1 cut(s) 1510
BmgT120I GGNCC 3 cut(s) 1785, 2606, 2651
BmiI GGNNCC 9 cut(s) 234, 676, 1381, 1650, 1786, 1859, 2076, 2653, 3070
BmrFI CCNGG 9 cut(s) 337, 849, 1406, 1431, 1884, 2540, 2610, 3107, 3314
BmrI ACTGGG 1 cut(s) 2755
BmtI GCTAGC 2 cut(s) 1695, 1910
BmuI ACTGGG 1 cut(s) 2755
BpmI CTGGAG 5 cut(s) 46, 47, 121, 1302, 1590
Bpu14I TTCGAA 1 cut(s) 2670
BpuEI CTTGAG 3 cut(s) 23, 818, 1463
BpuMI CCSGG 2 cut(s) 337, 1431
Bsa29I ATCGAT 2 cut(s) 612, 2440
BsaAI YACGTR 3 cut(s) 166, 857, 1974
BsaI GGTCTC 2 cut(s) 60, 3296
BsaJI CCNNGG 7 cut(s) 171, 439, 1503, 2539, 2609, 3072, 3340
Bsc4I CCNNNNNNNGG 7 cut(s) 445, 1202, 1389, 1854, 1883, 1886, 2615
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 5 cut(s) 50, 70, 883, 1682, 2750
Bse21I CCTNAGG 1 cut(s) 1789
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 7 cut(s) 849, 1406, 1884, 2540, 2610, 3107, 3314
BseCI ATCGAT 2 cut(s) 612, 2440
BseDI CCNNGG 7 cut(s) 171, 439, 1503, 2539, 2609, 3072, 3340
BseGI GGATG 8 cut(s) 298, 323, 649, 1171, 2047, 2710, 3124, 3214
BseLI CCNNNNNNNGG 7 cut(s) 445, 1202, 1389, 1854, 1883, 1886, 2615
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 5 cut(s) 938, 1256, 1467, 1617, 1803
BseNI ACTGG 5 cut(s) 50, 70, 883, 1682, 2750
BseRI GAGGAG 5 cut(s) 290, 453, 918, 1869, 3314
BseSI GKGCMC 1 cut(s) 2815
BseXI GCAGC 7 cut(s) 147, 461, 940, 956, 2559, 3201, 3304
BsgI GTGCAG 4 cut(s) 146, 266, 2244, 2885
BshFI GGCC 5 cut(s) 176, 951, 1409, 2652, 3312
BshNI GGYRCC 1 cut(s) 3068
BshVI ATCGAT 2 cut(s) 612, 2440
BsiHKAI GWGCWC 4 cut(s) 204, 662, 862, 2815
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 3 cut(s) 155, 336, 1431
BslFI GGGAC 3 cut(s) 99, 1253, 1798
BslI CCNNNNNNNGG 7 cut(s) 445, 1202, 1389, 1854, 1883, 1886, 2615
BsmAI GTCTC 5 cut(s) 60, 1670, 1740, 3058, 3296
BsmFI GGGAC 3 cut(s) 99, 1253, 1798
BsmI GAATGC 2 cut(s) 2163, 2532
BsnI GGCC 5 cut(s) 176, 951, 1409, 2652, 3312
Bso31I GGTCTC 2 cut(s) 60, 3296
BsoBI CYCGRG 1 cut(s) 791
Bsp119I TTCGAA 1 cut(s) 2670
Bsp1286I GDGCHC 6 cut(s) 204, 662, 862, 1110, 1862, 2815
BspACI CCGC 7 cut(s) 152, 868, 931, 1848, 2547, 3194, 3283
BspANI GGCC 5 cut(s) 176, 951, 1409, 2652, 3312
BspCNI CTCAG 5 cut(s) 937, 1255, 1466, 1616, 1802
BspDI ATCGAT 2 cut(s) 612, 2440
BspHI TCATGA 1 cut(s) 3133
BspLI GGNNCC 9 cut(s) 234, 676, 1381, 1650, 1786, 1859, 2076, 2653, 3070
BspMAI CTGCAG 1 cut(s) 3085
BspMI ACCTGC 2 cut(s) 511, 3074
BspOI GCTAGC 2 cut(s) 1695, 1910
BspPI GGATC 8 cut(s) 1246, 1374, 1387, 1400, 1643, 1656, 1971, 3333
BspQI GCTCTTC 1 cut(s) 867
BspT104I TTCGAA 1 cut(s) 2670
BspT107I GGYRCC 1 cut(s) 3068
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 2 cut(s) 60, 3296
BsrDI GCAATG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 5 cut(s) 50, 70, 883, 1682, 2750
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 7 cut(s) 171, 439, 1503, 2539, 2609, 3072, 3340
BssNAI GTATAC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 423
BssT1I CCWWGG 4 cut(s) 439, 1503, 3072, 3340
Bst1107I GTATAC 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 7 cut(s) 849, 1406, 1884, 2540, 2610, 3107, 3314
Bst6I CTCTTC 5 cut(s) 867, 1043, 1296, 1402, 2862
BstAFI CTTAAG 1 cut(s) 533
BstBAI YACGTR 3 cut(s) 166, 857, 1974
BstBI TTCGAA 1 cut(s) 2670
BstDSI CCRYGG 1 cut(s) 171
BstEII GGTNACC 1 cut(s) 1843
BstENI CCTNNNNNAGG 1 cut(s) 1387
BstF5I GGATG 8 cut(s) 298, 323, 649, 1171, 2047, 2710, 3124, 3214
BstH2I RGCGCY 3 cut(s) 26, 161, 727
BstHHI GCGC 3 cut(s) 25, 160, 726
BstMAI GTCTC 5 cut(s) 60, 1670, 1740, 3058, 3296
BstMWI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2544
BstNI CCWGG 7 cut(s) 849, 1406, 1884, 2540, 2610, 3107, 3314
BstNSI RCATGY 5 cut(s) 1193, 2301, 2468, 3029, 3062
BstPI GGTNACC 1 cut(s) 1843
BstSCI CCNGG 9 cut(s) 335, 847, 1404, 1429, 1882, 2538, 2608, 3105, 3312
BstSFI CTRYAG 2 cut(s) 387, 3081
BstSLI GKGCMC 1 cut(s) 2815
BstV1I GCAGC 7 cut(s) 147, 461, 940, 956, 2559, 3201, 3304
BstX2I RGATCY 5 cut(s) 1238, 1379, 1392, 1648, 1963
BstYI RGATCY 5 cut(s) 1238, 1379, 1392, 1648, 1963
BstZ17I GTATAC 1 cut(s) 33
Bsu15I ATCGAT 2 cut(s) 612, 2440
Bsu36I CCTNAGG 1 cut(s) 1789
BsuI GTATCC 3 cut(s) 1114, 2376, 2385
BsuRI GGCC 5 cut(s) 176, 951, 1409, 2652, 3312
BsuTUI ATCGAT 2 cut(s) 612, 2440
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 2 cut(s) 138, 2561
BtrI CACGTC 1 cut(s) 1510
BtsCI GGATG 8 cut(s) 298, 323, 649, 1171, 2047, 2710, 3124, 3214
BtsI GCAGTG 2 cut(s) 1253, 2832
BtsIMutI CAGTG 6 cut(s) 768, 1253, 2287, 2743, 2832, 3130
BveI ACCTGC 2 cut(s) 511, 3074
CaiI CAGNNNCTG 1 cut(s) 2231
CciI TCATGA 1 cut(s) 3133
CfoI GCGC 3 cut(s) 25, 160, 726
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 1785, 2606, 2651
ClaI ATCGAT 2 cut(s) 612, 2440
CseI GACGC 2 cut(s) 1743, 2603
Csp6I GTAC 5 cut(s) 43, 1749, 1975, 2037, 3069
CviQI GTAC 5 cut(s) 43, 1749, 1975, 2037, 3069
DraI TTTAAA 1 cut(s) 2478
EaeI YGGCCR 2 cut(s) 174, 1407
Eam1104I CTCTTC 5 cut(s) 867, 1043, 1296, 1402, 2862
EarI CTCTTC 5 cut(s) 867, 1043, 1296, 1402, 2862
EciI GGCGGA 1 cut(s) 2562
Eco130I CCWWGG 4 cut(s) 439, 1503, 3072, 3340
Eco24I GRGCYC 2 cut(s) 1110, 1862
Eco31I GGTCTC 2 cut(s) 60, 3296
Eco47I GGWCC 2 cut(s) 1785, 2606
Eco47III AGCGCT 2 cut(s) 24, 725
Eco57I CTGAAG 5 cut(s) 960, 1277, 1355, 1751, 2099
Eco72I CACGTG 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 1789
Eco88I CYCGRG 1 cut(s) 791
Eco91I GGTNACC 1 cut(s) 1843
EcoNI CCTNNNNNAGG 1 cut(s) 1387
EcoO109I RGGNCCY 2 cut(s) 1785, 2651
EcoO65I GGTNACC 1 cut(s) 1843
EcoRI GAATTC 3 cut(s) 280, 1007, 3276
EcoRII CCWGG 7 cut(s) 847, 1404, 1882, 2538, 2608, 3105, 3312
EcoT14I CCWWGG 4 cut(s) 439, 1503, 3072, 3340
EcoT22I ATGCAT 1 cut(s) 2148
EcoT38I GRGCYC 2 cut(s) 1110, 1862
ErhI CCWWGG 4 cut(s) 439, 1503, 3072, 3340
FalI AAGNNNNNCTT 2 cut(s) 1123, 1155
FaqI GGGAC 3 cut(s) 99, 1253, 1798
FbaI TGATCA 1 cut(s) 3130
FblI GTMKAC 2 cut(s) 32, 2277
Fnu4HI GCNGC 8 cut(s) 161, 450, 929, 945, 2573, 3215, 3284, 3318
FokI GGATG 8 cut(s) 305, 310, 656, 1178, 2054, 2717, 3131, 3221
FriOI GRGCYC 2 cut(s) 1110, 1862
Fsp4HI GCNGC 8 cut(s) 161, 450, 929, 945, 2573, 3215, 3284, 3318
FspBI CTAG 6 cut(s) 330, 1692, 1713, 1907, 2022, 2165
GlaI GCGC 3 cut(s) 24, 159, 725
GluI GCNGC 8 cut(s) 161, 450, 929, 945, 2573, 3215, 3284, 3318
GsuI CTGGAG 5 cut(s) 46, 47, 121, 1302, 1590
HaeII RGCGCY 3 cut(s) 26, 161, 727
HaeIII GGCC 5 cut(s) 176, 951, 1409, 2652, 3312
HapII CCGG 3 cut(s) 155, 336, 1431
HgaI GACGC 2 cut(s) 1743, 2603
HhaI GCGC 3 cut(s) 25, 160, 726
Hin6I GCGC 3 cut(s) 23, 158, 724
HinP1I GCGC 3 cut(s) 23, 158, 724
HincII GTYRAC 3 cut(s) 936, 1679, 3250
HindII GTYRAC 3 cut(s) 936, 1679, 3250
HindIII AAGCTT 2 cut(s) 750, 1013
HpaII CCGG 3 cut(s) 155, 336, 1431
HphI GGTGA 7 cut(s) 617, 1465, 1602, 2116, 2670, 2998, 3121
Hpy188I TCNGA 9 cut(s) 286, 309, 897, 1063, 1177, 1296, 1606, 1770, 3244
HpyCH4IV ACGT 7 cut(s) 165, 856, 1509, 1745, 1973, 2048, 2248
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2544
HpySE526I ACGT 7 cut(s) 165, 856, 1509, 1745, 1973, 2048, 2248
HspAI GCGC 3 cut(s) 23, 158, 724
KpnI GGTACC 1 cut(s) 3072
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 3130
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 6 cut(s) 207, 338, 721, 1542, 1571, 1857
Lsp1109I GCAGC 7 cut(s) 147, 461, 940, 956, 2559, 3201, 3304
MaeI CTAG 6 cut(s) 330, 1692, 1713, 1907, 2022, 2165
MaeII ACGT 7 cut(s) 165, 856, 1509, 1745, 1973, 2048, 2248
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 5 cut(s) 1238, 1379, 1392, 1648, 1963
MhlI GDGCHC 6 cut(s) 204, 662, 862, 1110, 1862, 2815
MlyI GAGTC 3 cut(s) 189, 1616, 3245
MmeI TCCRAC 5 cut(s) 270, 1990, 2613, 3222, 3276
Mph1103I ATGCAT 1 cut(s) 2148
MreI CGCCGGCG 1 cut(s) 154
MroNI GCCGGC 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 1595
MseI TTAA 9 cut(s) 405, 534, 779, 996, 1115, 1865, 2318, 2477, 3291
MslI CAYNNNNRTG 3 cut(s) 1148, 2456, 3063
MspA1I CMGCKG 4 cut(s) 931, 1760, 1850, 3272
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 3 cut(s) 155, 336, 1431
MspR9I CCNGG 9 cut(s) 337, 849, 1406, 1431, 1884, 2540, 2610, 3107, 3314
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 2 cut(s) 2163, 2532
MvaI CCWGG 7 cut(s) 849, 1406, 1884, 2540, 2610, 3107, 3314
MwoI GCNNNNNNNGC 5 cut(s) 160, 455, 653, 704, 2544
NaeI GCCGGC 1 cut(s) 156
NciI CCSGG 2 cut(s) 337, 1431
NgoMIV GCCGGC 1 cut(s) 154
NheI GCTAGC 2 cut(s) 1691, 1906
NlaIV GGNNCC 9 cut(s) 234, 676, 1381, 1650, 1786, 1859, 2076, 2653, 3070
NmuCI GTSAC 5 cut(s) 166, 1032, 1608, 2986, 3109
NsiI ATGCAT 1 cut(s) 2148
NspI RCATGY 5 cut(s) 1193, 2301, 2468, 3029, 3062
NspV TTCGAA 1 cut(s) 2670
OliI CACNNNNGTG 1 cut(s) 1148
PagI TCATGA 1 cut(s) 3133
PaqCI CACCTGC 1 cut(s) 3074
PciI ACATGT 2 cut(s) 2464, 3058
PciSI GCTCTTC 1 cut(s) 867
PcsI WCGNNNNNNNCGW 2 cut(s) 1751, 2045
PctI GAATGC 2 cut(s) 2163, 2532
PdiI GCCGGC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 1595
PfeI GAWTC 8 cut(s) 394, 599, 914, 1363, 2132, 2564, 2693, 3077
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 8 cut(s) 162, 451, 930, 946, 2574, 3216, 3285, 3319
PleI GAGTC 3 cut(s) 188, 1615, 3245
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
PpsI GAGTC 3 cut(s) 188, 1615, 3245
Ppu21I YACGTR 3 cut(s) 166, 857, 1974
PpuMI RGGWCCY 1 cut(s) 1785
PscI ACATGT 2 cut(s) 2464, 3058
PsiI TTATAA 1 cut(s) 2195
Psp5II RGGWCCY 1 cut(s) 1785
Psp6I CCWGG 7 cut(s) 847, 1404, 1882, 2538, 2608, 3105, 3312
PspCI CACGTG 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 1843
PspGI CCWGG 7 cut(s) 847, 1404, 1882, 2538, 2608, 3105, 3312
PspN4I GGNNCC 9 cut(s) 234, 676, 1381, 1650, 1786, 1859, 2076, 2653, 3070
PspPI GGNCC 3 cut(s) 1785, 2606, 2651
PspPPI RGGWCCY 1 cut(s) 1785
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PstI CTGCAG 1 cut(s) 3085
PstNI CAGNNNCTG 1 cut(s) 2231
PsuI RGATCY 5 cut(s) 1238, 1379, 1392, 1648, 1963
PvuII CAGCTG 2 cut(s) 1760, 3272
RsaI GTAC 5 cut(s) 44, 1750, 1976, 2038, 3070
RsaNI GTAC 5 cut(s) 43, 1749, 1975, 2037, 3069
RseI CAYNNNNRTG 3 cut(s) 1148, 2456, 3063
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 9 cut(s) 405, 534, 779, 996, 1115, 1865, 2318, 2477, 3291
SatI GCNGC 8 cut(s) 161, 450, 929, 945, 2573, 3215, 3284, 3318
Sau96I GGNCC 3 cut(s) 1785, 2606, 2651
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 3 cut(s) 189, 1616, 3245
ScrFI CCNGG 9 cut(s) 337, 849, 1406, 1431, 1884, 2540, 2610, 3107, 3314
SduI GDGCHC 6 cut(s) 204, 662, 862, 1110, 1862, 2815
SfcI CTRYAG 2 cut(s) 387, 3081
SfuI TTCGAA 1 cut(s) 2670
SgrAI CRCCGGYG 1 cut(s) 154
SinI GGWCC 2 cut(s) 1785, 2606
SmiMI CAYNNNNRTG 3 cut(s) 1148, 2456, 3063
SmlI CTYRAG 4 cut(s) 38, 533, 797, 1478
SmoI CTYRAG 4 cut(s) 38, 533, 797, 1478
SsiI CCGC 7 cut(s) 152, 868, 931, 1848, 2547, 3194, 3283
SspMI CTAG 6 cut(s) 330, 1692, 1713, 1907, 2022, 2165
StyD4I CCNGG 9 cut(s) 335, 847, 1404, 1429, 1882, 2538, 2608, 3105, 3312
StyI CCWWGG 4 cut(s) 439, 1503, 3072, 3340
TaiI ACGT 7 cut(s) 168, 859, 1512, 1748, 1976, 2051, 2251
TaqI TCGA 6 cut(s) 19, 612, 1740, 2440, 2670, 3262
TatI WGTACW 2 cut(s) 42, 1748
TauI GCSGC 1 cut(s) 3286
TfiI GAWTC 8 cut(s) 394, 599, 914, 1363, 2132, 2564, 2693, 3077
Tru1I TTAA 9 cut(s) 405, 534, 779, 996, 1115, 1865, 2318, 2477, 3291
Tru9I TTAA 9 cut(s) 405, 534, 779, 996, 1115, 1865, 2318, 2477, 3291
TscAI CASTG 6 cut(s) 768, 1253, 2287, 2750, 2832, 3130
TseFI GTSAC 5 cut(s) 166, 1032, 1608, 2986, 3109
TseI GCWGC 7 cut(s) 160, 449, 928, 944, 2572, 3214, 3317
Tsp45I GTSAC 5 cut(s) 166, 1032, 1608, 2986, 3109
TspDTI ATGAA 9 cut(s) 525, 559, 1274, 1355, 2403, 2496, 2567, 2951, 3150
TspGWI ACGGA 4 cut(s) 103, 656, 1063, 2054
TspRI CASTG 6 cut(s) 768, 1253, 2287, 2750, 2832, 3130
Vha464I CTTAAG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 2811
VpaK11BI GGWCC 2 cut(s) 1785, 2606
XagI CCTNNNNNAGG 1 cut(s) 1387
XapI RAATTY 9 cut(s) 280, 565, 738, 1007, 1459, 1636, 2638, 3167, 3276
XceI RCATGY 5 cut(s) 1193, 2301, 2468, 3029, 3062
XcmI CCANNNNNNNNNTGG 2 cut(s) 112, 1231
XmiI GTMKAC 2 cut(s) 32, 2277
XmnI GAANNNNTTC 1 cut(s) 1595
XspI CTAG 6 cut(s) 330, 1692, 1713, 1907, 2022, 2165
ZrmI AGTACT 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 2148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.