Rorug05G0164100

N-terminal region of Chorein or VPS13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007959
Physical Location & Seq
Forward (+)
15187591 .. 15189126
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0164100.1

Sequence Viewer

Length: 552 bp
ATGTTGCTCACTAGTCACTACTTGCTCATTCTTTTTCTGGCATCTTCATCTCTGCAAACTACTAAACTGTGTTTGGGAGGTGAACTTCCGAGTGGTCTAAGACCATCATCATGCATCGAGGAAGAGAGACAAGCACTTCTCACCTTCAAAGGAGATGTTACTGATAGTTCCGGCAGACTTTCTTCTTTGGTGGGTCAGGATTGCTGTCAATGGAAAGGGATTTCATGCAACAGCCATACAAGTCACGTTGCAAAGATGGACCTCCGTGTCCTGATTCATGTGGAGTTAGGTACGTGTTTTCTTAATGGCAGCTTAGGGCGTACTCCTTATGCTATTTGGAGAGGGTTGATGTGGGGAAAACAAGTGATCGACATGGGGACGAGATGGAGGATTGGAGATGGGAAAAGAGTTAGTGTGTTGGCTGATAGGTGGTTGCCGTGTCCGAATGGGTCGTATAGTGTGAAGTCCGGGTACTGGGTGGCTAGGGATATGATGACTCGGCAACGGGGTGACATTGCGGGTTCCAGTGCCAATGAATGTAAGAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chorein_N

Protein Analysis

183

Amino Acids

20.19

Weight (kDa)

9.11

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 77 5.9e-09 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AciI CCGC 1 cut(s) 518
AfaI GTAC 3 cut(s) 292, 322, 473
AfiI CCNNNNNNNGG 1 cut(s) 474
AflIII ACRYGT 1 cut(s) 293
AgsI TTSAA 1 cut(s) 148
AhlI ACTAGT 1 cut(s) 11
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 3 cut(s) 92, 133, 521
AvaII GGWCC 1 cut(s) 259
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BbvI GCAGC 1 cut(s) 321
BccI CCATC 4 cut(s) 112, 250, 378, 392
BceAI ACGGC 1 cut(s) 421
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 121
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 483
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 469
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 523
BmrFI CCNGG 1 cut(s) 469
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 50, 123
BmuI ACTGGG 1 cut(s) 484
Bpu10I CCTNAGC 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 469
BsaAI YACGTR 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse1I ACTGG 2 cut(s) 479, 525
Bse3DI GCAATG 1 cut(s) 513
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMI GCAATG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 479, 525
BseXI GCAGC 1 cut(s) 321
BsiSI CCGG 2 cut(s) 171, 468
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 391
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 1 cut(s) 518
BspLI GGNNCC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 2 cut(s) 479, 525
BssMI GATC 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 98, 313
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 3 cut(s) 291, 321, 472
CviAII CATG 4 cut(s) 111, 225, 278, 373
CviJI RGCY 4 cut(s) 234, 312, 422, 482
CviKI_1 RGCY 4 cut(s) 234, 312, 422, 482
CviQI GTAC 3 cut(s) 291, 321, 472
DdeI CTNAG 2 cut(s) 98, 313
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 116
FaeI CATG 4 cut(s) 114, 228, 281, 376
FaiI YATR 8 cut(s) 112, 226, 237, 279, 330, 374, 456, 491
FaqI GGGAC 1 cut(s) 391
FatI CATG 4 cut(s) 110, 224, 277, 372
FauI CCCGC 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 310
FspBI CTAG 2 cut(s) 12, 483
GluI GCNGC 1 cut(s) 310
HapII CCGG 2 cut(s) 171, 468
Hin1II CATG 4 cut(s) 114, 228, 281, 376
HinfI GANTC 2 cut(s) 274, 496
HpaII CCGG 2 cut(s) 171, 468
HphI GGTGA 3 cut(s) 92, 133, 521
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 90, 444
Hpy188III TCNNGA 2 cut(s) 197, 271
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 154, 538
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 2 cut(s) 246, 293
HpyCH4V TGCA 4 cut(s) 55, 114, 228, 251
HpyF3I CTNAG 2 cut(s) 98, 313
HpySE526I ACGT 2 cut(s) 246, 293
Hsp92II CATG 4 cut(s) 114, 228, 281, 376
Kzo9I GATC 1 cut(s) 366
LpnPI CCDG 7 cut(s) 23, 182, 184, 284, 460, 481, 538
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 2 cut(s) 50, 123
MaeI CTAG 2 cut(s) 12, 483
MaeII ACGT 2 cut(s) 246, 293
MaeIII GTNAC 4 cut(s) 14, 157, 242, 509
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 3 cut(s) 36, 134, 174
MlyI GAGTC 1 cut(s) 490
MnlI CCTC 5 cut(s) 71, 112, 272, 335, 381
Mph1103I ATGCAT 1 cut(s) 116
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 109
MspI CCGG 2 cut(s) 171, 468
MspR9I CCNGG 1 cut(s) 469
NciI CCSGG 1 cut(s) 469
NdeII GATC 1 cut(s) 366
NlaIII CATG 4 cut(s) 114, 228, 281, 376
NlaIV GGNNCC 1 cut(s) 523
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 3 cut(s) 14, 242, 509
NsiI ATGCAT 1 cut(s) 116
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 311
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Ppu21I YACGTR 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 523
PspPI GGNCC 1 cut(s) 259
RsaI GTAC 3 cut(s) 292, 322, 473
RsaNI GTAC 3 cut(s) 291, 321, 472
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 310
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 469
SetI ASST 9 cut(s) 82, 146, 249, 264, 292, 296, 314, 431, 549
SfaNI GCATC 2 cut(s) 50, 123
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 109
SpeI ACTAGT 1 cut(s) 11
SsiI CCGC 1 cut(s) 518
SspMI CTAG 2 cut(s) 12, 483
StyD4I CCNGG 1 cut(s) 467
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 2 cut(s) 249, 296
TaqI TCGA 2 cut(s) 117, 369
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 3 cut(s) 14, 242, 509
TseI GCWGC 1 cut(s) 309
Tsp45I GTSAC 3 cut(s) 14, 242, 509
TspDTI ATGAA 4 cut(s) 36, 213, 266, 549
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 259
XspI CTAG 2 cut(s) 12, 483
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.