Rmu_co8446841.1_g000001

methyltransferase PMT10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8446841.1
OG0011820
Physical Location & Seq
Reverse (-)
1 .. 1392
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8446841.1_g000001.1.cds

Sequence Viewer

Length: 1048 bp
atgaaggccctcgcggccaccgcggcggagatcgtgaagaacccgacgttcatcaaaattacagctattgccatcgcctccttcaccctcttcgtcctcgccaaccactactccgcttcctactctcccttctcctcctccaccgccacaacctccgccactcactctctcgcatctccggcgccggaatcctctccaccgacacctcccgcgtctcctccaccgccgccgccttcaccgcctccgcctccacccccggaggtggagaggatggggatagtggacgagaacggcgcgatgtcggaggagttcaaggtcggcgagttcgacgcgaccctggccgaggagctgaagaatgcgagcggtggagtgaaggatgggagtggcggtgacggcaatggcggtggtgttagggttaagattgacaagtttggggtgtgtgatcagaaatttactgattatataccgtgtttggacaatgtggatgagattaagaagctgaactcgactgagagaggtgaaaagtttgaaaggcattgtcctggacaaggcaagaggctgaattgcttggtgccgaggccgaaagggtatcagattcgaattccttggcctcagagcagagatgaggtgtggttcagtaatgtaccccatacaagacttgtcgaagataaaggtggtcaaaattggatagcgattaagaaagataaatttgtgtttcctggaggtggaacacagtttattcatggggcaaatgagtacttggatcagatttctcagatgattcctgaaattgcatttggccacaagacccgagtagcgttagatgttggttgtggagtagcgagttttggtgcctttttgatgcaacggaatgtgaccactctgtcagtagcgccaaaagatgtccatgagaaccagatccagtttgcactagagcgtggtgtgcctgctatggtggcagtgtttgcaactcaccgcttgttgtatccaagccaggcttttgacttgattcactgttcaagatgtagaattaattggactcgtgatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

349

Amino Acids

37.91

Weight (kDa)

6.76

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77260
fragaria_vesca FvH4_2g28020
malus_domestica MD15G1132900.v1.1
prunus_persica Prupe.1G488500_v2.0.a1 Prupe.1G488500_v2.0.a1
pyrus_communis pycom15g11980
rosa_chinensis RchiOBHm_Chr6g0296881
rosa_laevigata RLG00000011649
rosa_multiflora Rmu_co8446841.1_g000001 Rmu_sc0033097.1_g000001 Rmu_sc0038066.1_g000001
rosa_roxburghii Rroxscaffold_7G00171060
rosa_rugosa Rorug06G0267200 Rorug06G0267300
rosa_samantha Rh6AG378000 Rh6BG386000 Rh6CG391400 Rh6DG378700
rosa_wichuraiana Rw6G033040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 883
AccB1I GGYRCC 3 cut(s) 181, 571, 851
AccBSI CCGCTC 1 cut(s) 363
AccII CGCG 5 cut(s) 14, 23, 212, 296, 332
AclWI GGATC 2 cut(s) 771, 913
AcoI YGGCCR 3 cut(s) 15, 339, 799
AcsI RAATTY 3 cut(s) 449, 600, 707
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 2 cut(s) 645, 758
AfiI CCNNNNNNNGG 4 cut(s) 262, 343, 548, 725
AgsI TTSAA 3 cut(s) 313, 530, 1020
AjnI CCWGG 4 cut(s) 336, 541, 718, 993
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
AluBI AGCT 3 cut(s) 65, 349, 499
AluI AGCT 3 cut(s) 65, 349, 499
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 2 cut(s) 771, 913
Ama87I CYCGRG 1 cut(s) 810
AoxI GGCC 6 cut(s) 6, 15, 339, 578, 608, 799
ApoI RAATTY 3 cut(s) 449, 600, 707
AseI ATTAAT 1 cut(s) 1032
AspLEI GCGC 3 cut(s) 184, 296, 895
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 5 cut(s) 76, 228, 401, 530, 965
AsuII TTCGAA 1 cut(s) 598
AvaI CYCGRG 1 cut(s) 810
BalI TGGCCA 1 cut(s) 801
BanI GGYRCC 3 cut(s) 181, 571, 851
BauI CACGAG 1 cut(s) 1041
BccI CCATC 3 cut(s) 80, 265, 371
BceAI ACGGC 2 cut(s) 307, 409
BciT130I CCWGG 4 cut(s) 338, 543, 720, 995
BciVI GTATCC 1 cut(s) 996
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 932
BfoI RGCGCY 2 cut(s) 185, 896
BfuI GTATCC 1 cut(s) 996
BglI GCCNNNNNGGC 2 cut(s) 14, 23
BisI GCNGC 4 cut(s) 15, 24, 227, 230
BlsI GCNGC 4 cut(s) 16, 25, 228, 231
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 5 cut(s) 257, 338, 543, 720, 995
BmeT110I CYCGRG 1 cut(s) 810
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 183, 573, 853
BmrFI CCNGG 5 cut(s) 257, 338, 543, 720, 995
BmsI GCATC 2 cut(s) 182, 852
BpmI CTGGAG 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 598
BpuMI CCSGG 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 6 cut(s) 21, 255, 336, 342, 575, 605
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 373, 403
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 343, 548, 725
Bse1I ACTGG 1 cut(s) 922
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 4 cut(s) 338, 543, 720, 995
BseDI CCNNGG 6 cut(s) 21, 255, 336, 342, 575, 605
BseGI GGATG 3 cut(s) 276, 382, 490
BseLI CCNNNNNNNGG 4 cut(s) 262, 343, 548, 725
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 3 cut(s) 501, 626, 788
BseNI ACTGG 1 cut(s) 922
BseRI GAGGAG 5 cut(s) 124, 127, 207, 320, 359
Bsh1236I CGCG 5 cut(s) 14, 23, 212, 296, 332
BshFI GGCC 6 cut(s) 8, 17, 341, 580, 610, 801
BshNI GGYRCC 3 cut(s) 181, 571, 851
BsiHKCI CYCGRG 1 cut(s) 810
BsiSI CCGG 3 cut(s) 179, 185, 257
BslI CCNNNNNNNGG 4 cut(s) 262, 343, 548, 725
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 6 cut(s) 8, 17, 341, 580, 610, 801
BsoBI CYCGRG 1 cut(s) 810
Bsp119I TTCGAA 1 cut(s) 598
Bsp143I GATC 4 cut(s) 30, 442, 763, 918
BspANI GGCC 6 cut(s) 8, 17, 341, 580, 610, 801
BspCNI CTCAG 3 cut(s) 502, 625, 787
BspFNI CGCG 5 cut(s) 14, 23, 212, 296, 332
BspLI GGNNCC 3 cut(s) 183, 573, 853
BspPI GGATC 2 cut(s) 771, 913
BspT104I TTCGAA 1 cut(s) 598
BspT107I GGYRCC 3 cut(s) 181, 571, 851
BsrBI CCGCTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 1 cut(s) 922
BssECI CCNNGG 6 cut(s) 21, 255, 336, 342, 575, 605
BssMI GATC 4 cut(s) 30, 442, 763, 918
BssNI GRCGYC 1 cut(s) 182
BssSI CACGAG 1 cut(s) 1041
BssT1I CCWWGG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 1041
Bst2UI CCWGG 4 cut(s) 338, 543, 720, 995
Bst4CI ACNGT 3 cut(s) 468, 735, 1016
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 965
BstBI TTCGAA 1 cut(s) 598
BstC8I GCNNGC 2 cut(s) 361, 948
BstDEI CTNAG 3 cut(s) 510, 612, 774
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 2 cut(s) 341, 546
BstF5I GGATG 3 cut(s) 276, 382, 490
BstFNI CGCG 5 cut(s) 14, 23, 212, 296, 332
BstH2I RGCGCY 2 cut(s) 185, 896
BstHHI GCGC 3 cut(s) 184, 296, 895
BstKTI GATC 4 cut(s) 33, 445, 766, 921
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 4 cut(s) 30, 442, 763, 918
BstNI CCWGG 4 cut(s) 338, 543, 720, 995
BstSCI CCNGG 5 cut(s) 255, 336, 541, 718, 993
BstUI CGCG 5 cut(s) 14, 23, 212, 296, 332
BstX2I RGATCY 1 cut(s) 918
BstYI RGATCY 1 cut(s) 918
BsuI GTATCC 1 cut(s) 996
BsuRI GGCC 6 cut(s) 8, 17, 341, 580, 610, 801
BtgI CCRYGG 1 cut(s) 21
BtgZI GCGATG 2 cut(s) 58, 311
BtsCI GGATG 3 cut(s) 276, 382, 490
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 2 cut(s) 966, 1012
Cac8I GCNNGC 2 cut(s) 361, 948
CfoI GCGC 3 cut(s) 184, 296, 895
Cfr13I GGNCC 1 cut(s) 7
Cfr42I CCGCGG 1 cut(s) 24
CseI GACGC 2 cut(s) 201, 338
Csp6I GTAC 2 cut(s) 644, 757
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 2 cut(s) 743, 908
CviQI GTAC 2 cut(s) 644, 757
DdeI CTNAG 3 cut(s) 510, 612, 774
DinI GGCGCC 1 cut(s) 183
DpnI GATC 4 cut(s) 32, 444, 765, 920
DpnII GATC 4 cut(s) 30, 442, 763, 918
DrdI GACNNNNNNGTC 1 cut(s) 883
DseDI GACNNNNNNGTC 1 cut(s) 883
EaeI YGGCCR 3 cut(s) 15, 339, 799
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 3 cut(s) 41, 145, 234
Eco130I CCWWGG 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 810
EcoNI CCTNNNNNAGG 2 cut(s) 341, 546
EcoO109I RGGNCCY 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 600
EcoRII CCWGG 4 cut(s) 336, 541, 718, 993
EcoT14I CCWWGG 1 cut(s) 605
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 605
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 2 cut(s) 746, 911
FaiI YATR 6 cut(s) 462, 464, 651, 744, 909, 953
FalI AAGNNNNNCTT 2 cut(s) 982, 1014
FatI CATG 2 cut(s) 742, 907
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 15, 24, 227, 230
FokI GGATG 3 cut(s) 283, 389, 497
Fsp4HI GCNGC 4 cut(s) 15, 24, 227, 230
FspBI CTAG 1 cut(s) 932
GlaI GCGC 3 cut(s) 183, 295, 894
GluI GCNGC 4 cut(s) 15, 24, 227, 230
GsuI CTGGAG 1 cut(s) 741
HaeII RGCGCY 2 cut(s) 185, 896
HaeIII GGCC 6 cut(s) 8, 17, 341, 580, 610, 801
HapII CCGG 3 cut(s) 179, 185, 257
HgaI GACGC 2 cut(s) 201, 338
HhaI GCGC 3 cut(s) 184, 296, 895
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 2 cut(s) 746, 911
Hin6I GCGC 3 cut(s) 182, 294, 893
HinP1I GCGC 3 cut(s) 182, 294, 893
HinfI GANTC 5 cut(s) 188, 595, 781, 1009, 1039
HpaII CCGG 3 cut(s) 179, 185, 257
HphI GGTGA 5 cut(s) 76, 228, 401, 530, 965
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 6 cut(s) 304, 447, 594, 615, 768, 777
Hpy188III TCNNGA 4 cut(s) 34, 785, 1020, 1043
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 2 cut(s) 49, 332
HpyAV CCTTC 4 cut(s) 91, 139, 243, 367
HpyCH4III ACNGT 3 cut(s) 468, 735, 1016
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 4 cut(s) 794, 865, 929, 968
HpyF3I CTNAG 3 cut(s) 510, 612, 774
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 2 cut(s) 746, 911
HspAI GCGC 3 cut(s) 182, 294, 893
KasI GGCGCC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 442
KspI CCGCGG 1 cut(s) 24
Kzo9I GATC 4 cut(s) 30, 442, 763, 918
LmnI GCTCC 1 cut(s) 346
LweI GCATC 2 cut(s) 182, 852
MaeI CTAG 1 cut(s) 932
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 389, 874
MalI GATC 4 cut(s) 32, 444, 765, 920
MbiI CCGCTC 1 cut(s) 363
MboI GATC 4 cut(s) 30, 442, 763, 918
MboII GAAGA 4 cut(s) 49, 82, 364, 677
MflI RGATCY 1 cut(s) 918
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 9 cut(s) 57, 449, 562, 600, 682, 707, 789, 1029, 1033
MluNI TGGCCA 1 cut(s) 801
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 1033
MmeI TCCRAC 1 cut(s) 282
Mox20I TGGCCA 1 cut(s) 801
MscI TGGCCA 1 cut(s) 801
MseI TTAA 4 cut(s) 417, 492, 696, 1032
Msp20I TGGCCA 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 3 cut(s) 179, 185, 257
MspR9I CCNGG 5 cut(s) 257, 338, 543, 720, 995
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 4 cut(s) 338, 543, 720, 995
MvnI CGCG 5 cut(s) 14, 23, 212, 296, 332
NarI GGCGCC 1 cut(s) 182
NciI CCSGG 1 cut(s) 257
NdeII GATC 4 cut(s) 30, 442, 763, 918
NlaIII CATG 2 cut(s) 746, 911
NlaIV GGNNCC 3 cut(s) 183, 573, 853
NmeAIII GCCGAG 2 cut(s) 367, 600
NmuCI GTSAC 2 cut(s) 389, 874
NspV TTCGAA 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 4 cut(s) 188, 595, 781, 1009
PfoI TCCNGGA 2 cut(s) 541, 718
PkrI GCNGC 4 cut(s) 16, 25, 228, 231
PleI GAGTC 1 cut(s) 1033
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 1033
PshBI ATTAAT 1 cut(s) 1032
Psp6I CCWGG 4 cut(s) 336, 541, 718, 993
PspGI CCWGG 4 cut(s) 336, 541, 718, 993
PspN4I GGNNCC 3 cut(s) 183, 573, 853
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 918
RsaI GTAC 2 cut(s) 645, 758
RsaNI GTAC 2 cut(s) 644, 757
SacII CCGCGG 1 cut(s) 24
SaqAI TTAA 4 cut(s) 417, 492, 696, 1032
SatI GCNGC 4 cut(s) 15, 24, 227, 230
Sau3AI GATC 4 cut(s) 30, 442, 763, 918
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 1 cut(s) 1033
ScrFI CCNGG 5 cut(s) 257, 338, 543, 720, 995
SfaNI GCATC 2 cut(s) 182, 852
SfiI GGCCNNNNNGGCC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 183
Sfr303I CCGCGG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 598
SgrBI CCGCGG 1 cut(s) 24
Sse9I AATT 9 cut(s) 57, 449, 562, 600, 682, 707, 789, 1029, 1033
SspDI GGCGCC 1 cut(s) 181
SspMI CTAG 1 cut(s) 932
StyD4I CCNGG 5 cut(s) 255, 336, 541, 718, 993
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 3 cut(s) 468, 735, 1016
TaiI ACGT 1 cut(s) 50
TaqI TCGA 4 cut(s) 327, 506, 598, 663
TasI AATT 9 cut(s) 57, 449, 562, 600, 682, 707, 789, 1029, 1033
TatI WGTACW 1 cut(s) 756
TauI GCSGC 4 cut(s) 17, 26, 229, 232
TfiI GAWTC 4 cut(s) 188, 595, 781, 1009
Tru1I TTAA 4 cut(s) 417, 492, 696, 1032
Tru9I TTAA 4 cut(s) 417, 492, 696, 1032
TscAI CASTG 2 cut(s) 966, 1019
TseFI GTSAC 2 cut(s) 389, 874
Tsp45I GTSAC 2 cut(s) 389, 874
TspDTI ATGAA 3 cut(s) 17, 40, 731
TspGWI ACGGA 1 cut(s) 883
TspRI CASTG 2 cut(s) 966, 1019
VspI ATTAAT 1 cut(s) 1032
XagI CCTNNNNNAGG 2 cut(s) 341, 546
XapI RAATTY 3 cut(s) 449, 600, 707
XspI CTAG 1 cut(s) 932
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.