Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011820

Physical Location & Seq

Genomic Coordinates Forward (+)

41390819 .. 41391670

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0267300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAACGCAACGAAAAAGAAATATTATGCCGATTTTCGGGAGGCTGAGCTTATCGGAGTTATATCTGCTGCTATTGTGAAAACAGCTAGTGCTCCAATTGACCGTGTCAAAATACTAATACAGAATCAGAATGAGTTGATCATGAATGGTCGGCTTTCAGAACCATACAAGGGGATAAAAGATTGCTTTGGCCGGATTATCAAGGATGAGGGTGTCAGCACTCTGTGGAGAGGAAACACTGCTAACGTTATCAGATACCTTCCTAGCCAAGTGTTAACCATTGGCTTCAACCATTATTACAAGGTTCTTTTCAGCTGTGATAATCATCTTGTGGGGAACCTAGTATCAGGTGCTGCTGCTGGTTCTTCGTCTCTTTTTTCGTTGTATTCTCTCGACTATGTAAGAACACGTTTGGCAAGTGACATCAAGGCCACAAAGGGCGGTCAGAGACAGTTTCAGGGTTTGATTGATGTCTACAGAACAGCCGGTTTTCAAGGCACATACCGGGGATTCAATATCTCTTTTGCTGGGGCTGCTGTGTACCGCGGCCTCTACTTTGGACTATACGATTCTTTGAGACCTCACCTTGCTGATAGGGCTAATTTCTTTTCTTGTTTCTTGCTGGGATGGGGAGTTTTCACGACTGCTGGATTGGCATCGTACCCCATCGACACAGTGCGAAGAAGGATGATGATGACCTCGGCAATTTCAGAGAATGCTGCTTTTGCTACATTTAGGAGAATCATAAGAGATGAAGGTGTTAAGTCTCTGTACAAGGGTGCCGGGGCAAACGTATTACGCGGTGTTGCAGGTGCTCTTATGCTTGCTGTCATGCTGTGTATGACAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

283

Amino Acids

31.17

Weight (kDa)

9.78

Isoelectric Point (pI)

23.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	17 - 105	2.1e-19	Mitochondrial carrier protein
Mito_carr	PF00153	109 - 197	7.8e-16	Mitochondrial carrier protein
Mito_carr	PF00153	200 - 275	5.3e-16	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77260
fragaria_vesca	FvH4_2g28020
malus_domestica	MD15G1132900.v1.1
prunus_persica	Prupe.1G488500_v2.0.a1 Prupe.1G488500_v2.0.a1
pyrus_communis	pycom15g11980
rosa_chinensis	RchiOBHm_Chr6g0296881
rosa_laevigata	RLG00000011649
rosa_multiflora	Rmu_co8446841.1_g000001 Rmu_sc0033097.1_g000001 Rmu_sc0038066.1_g000001
rosa_roxburghii	Rroxscaffold_7G00171060
rosa_rugosa	Rorug06G0267200 Rorug06G0267300
rosa_samantha	Rh6AG378000 Rh6BG386000 Rh6CG391400 Rh6DG378700
rosa_wichuraiana	Rw6G033040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	800
Acc36I	ACCTGC	1 cut(s)	800
AccB1I	GGYRCC	1 cut(s)	779
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	2 cut(s)	546, 801
AciI	CCGC	4 cut(s)	441, 544, 546, 801
AclI	AACGTT	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	190
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	3 cut(s)	542, 662, 773
AfiI	CCNNNNNNNGG	2 cut(s)	36, 170
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	289, 494, 514
AluBI	AGCT	4 cut(s)	49, 86, 315, 849
AluI	AGCT	4 cut(s)	49, 86, 315, 849
Alw21I	GWGCWC	2 cut(s)	94, 817
Alw26I	GTCTC	4 cut(s)	375, 442, 571, 771
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	190, 429, 547
ApeKI	GCWGC	5 cut(s)	68, 353, 356, 533, 719
AsuC2I	CCSGG	2 cut(s)	506, 784
AsuHPI	GGTGA	1 cut(s)	575
BanI	GGYRCC	1 cut(s)	779
Bbv12I	GWGCWC	2 cut(s)	94, 817
BbvI	GCAGC	5 cut(s)	55, 340, 343, 520, 706
BccI	CCATC	2 cut(s)	621, 674
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	506, 784
BcoDI	GTCTC	4 cut(s)	375, 442, 571, 771
BfaI	CTAG	3 cut(s)	87, 264, 341
BfmI	CTRYAG	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	800
BisI	GCNGC	6 cut(s)	69, 354, 357, 534, 547, 720
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	6 cut(s)	70, 355, 358, 535, 548, 721
Bme1390I	CCNGG	2 cut(s)	506, 784
BmiI	GGNNCC	2 cut(s)	338, 781
BmrFI	CCNGG	2 cut(s)	506, 784
BmsI	GCATC	1 cut(s)	665
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	506, 784
BsaBI	GATNNNNATC	2 cut(s)	324, 655
BsaI	GGTCTC	1 cut(s)	571
BsaJI	CCNNGG	4 cut(s)	505, 544, 699, 783
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 170
Bse118I	RCCGGY	1 cut(s)	485
Bse8I	GATNNNNATC	2 cut(s)	324, 655
BseDI	CCNNGG	4 cut(s)	505, 544, 699, 783
BseGI	GGATG	3 cut(s)	211, 632, 693
BseJI	GATNNNNATC	2 cut(s)	324, 655
BseLI	CCNNNNNNNGG	2 cut(s)	36, 170
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	5 cut(s)	55, 340, 343, 520, 706
BseYI	CCCAGC	2 cut(s)	527, 622
Bsh1236I	CGCG	2 cut(s)	546, 801
BshFI	GGCC	3 cut(s)	192, 431, 549
BshNI	GGYRCC	1 cut(s)	779
BsiHKAI	GWGCWC	2 cut(s)	94, 817
BsiSI	CCGG	4 cut(s)	193, 486, 505, 783
BslI	CCNNNNNNNGG	2 cut(s)	36, 170
BsmAI	GTCTC	4 cut(s)	375, 442, 571, 771
BsmBI	CGTCTC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	3 cut(s)	192, 431, 549
Bso31I	GGTCTC	1 cut(s)	571
Bsp1286I	GDGCHC	2 cut(s)	94, 817
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	1 cut(s)	138
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	4 cut(s)	441, 544, 546, 801
BspANI	GGCC	3 cut(s)	192, 431, 549
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	2 cut(s)	546, 801
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	338, 781
BspMI	ACCTGC	1 cut(s)	800
BspT107I	GGYRCC	1 cut(s)	779
BspTNI	GGTCTC	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	485
BsrGI	TGTACA	1 cut(s)	771
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	4 cut(s)	505, 544, 699, 783
BssMI	GATC	1 cut(s)	138
Bst4CI	ACNGT	3 cut(s)	104, 453, 676
BstAUI	TGTACA	1 cut(s)	771
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	211, 632, 693
BstFNI	CGCG	2 cut(s)	546, 801
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	4 cut(s)	375, 442, 571, 771
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	4 cut(s)	533, 596, 653, 725
BstSCI	CCNGG	2 cut(s)	504, 782
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	2 cut(s)	546, 801
BstV1I	GCAGC	5 cut(s)	55, 340, 343, 520, 706
BsuRI	GGCC	3 cut(s)	192, 431, 549
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	211, 632, 693
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 681
BveI	ACCTGC	1 cut(s)	800
Cac8I	GCNNGC	1 cut(s)	825
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	485
Cfr42I	CCGCGG	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	541, 661, 772
CviAII	CATG	2 cut(s)	142, 832
CviQI	GTAC	3 cut(s)	541, 661, 772
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
DraIII	CACNNNGTG	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	571
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	2 cut(s)	145, 835
FatI	CATG	2 cut(s)	141, 831
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	6 cut(s)	69, 354, 357, 534, 547, 720
FokI	GGATG	3 cut(s)	218, 639, 700
Fsp4HI	GCNGC	6 cut(s)	69, 354, 357, 534, 547, 720
FspBI	CTAG	3 cut(s)	87, 264, 341
GluI	GCNGC	6 cut(s)	69, 354, 357, 534, 547, 720
GsaI	CCCAGC	2 cut(s)	531, 626
HaeIII	GGCC	3 cut(s)	192, 431, 549
HapII	CCGG	4 cut(s)	193, 486, 505, 783
Hin1II	CATG	2 cut(s)	145, 835
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	4 cut(s)	124, 510, 569, 741
HpaI	GTTAAC	1 cut(s)	276
HpaII	CCGG	4 cut(s)	193, 486, 505, 783
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	3 cut(s)	276, 475, 541
Hpy188I	TCNGA	6 cut(s)	56, 129, 160, 254, 447, 712
Hpy188III	TCNNGA	4 cut(s)	38, 142, 392, 640
Hpy8I	GTNNAC	3 cut(s)	276, 475, 541
HpyAV	CCTTC	3 cut(s)	269, 678, 749
HpyCH4III	ACNGT	3 cut(s)	104, 453, 676
HpyCH4IV	ACGT	3 cut(s)	246, 409, 792
HpyCH4V	TGCA	1 cut(s)	809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	533, 596, 653, 725
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	3 cut(s)	246, 409, 792
Hsp92II	CATG	2 cut(s)	145, 835
Ksp22I	TGATCA	1 cut(s)	138
KspAI	GTTAAC	1 cut(s)	276
KspI	CCGCGG	1 cut(s)	547
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	5 cut(s)	55, 340, 343, 520, 706
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	3 cut(s)	87, 264, 341
MaeII	ACGT	3 cut(s)	246, 409, 792
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	2 cut(s)	357, 693
MfeI	CAATTG	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	94, 817
MluCI	AATT	3 cut(s)	96, 601, 705
MnlI	CCTC	6 cut(s)	34, 202, 224, 560, 591, 709
MseI	TTAA	2 cut(s)	275, 762
MspA1I	CMGCKG	2 cut(s)	315, 546
MspI	CCGG	4 cut(s)	193, 486, 505, 783
MspR9I	CCNGG	2 cut(s)	506, 784
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	721
MvnI	CGCG	2 cut(s)	546, 801
MwoI	GCNNNNNNNGC	4 cut(s)	533, 596, 653, 725
NciI	CCSGG	2 cut(s)	506, 784
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	2 cut(s)	145, 835
NlaIV	GGNNCC	2 cut(s)	338, 781
NmeAIII	GCCGAG	1 cut(s)	680
NmuCI	GTSAC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	141
PaqCI	CACCTGC	1 cut(s)	800
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	4 cut(s)	124, 510, 569, 741
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	6 cut(s)	70, 355, 358, 535, 548, 721
Psp1406I	AACGTT	1 cut(s)	246
PspFI	CCCAGC	2 cut(s)	527, 622
PspN4I	GGNNCC	2 cut(s)	338, 781
PstNI	CAGNNNCTG	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	315
RsaI	GTAC	3 cut(s)	542, 662, 773
RsaNI	GTAC	3 cut(s)	541, 661, 772
SacII	CCGCGG	1 cut(s)	547
SaqAI	TTAA	2 cut(s)	275, 762
SatI	GCNGC	6 cut(s)	69, 354, 357, 534, 547, 720
Sau3AI	GATC	1 cut(s)	138
ScrFI	CCNGG	2 cut(s)	506, 784
SduI	GDGCHC	2 cut(s)	94, 817
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	1 cut(s)	475
Sfr303I	CCGCGG	1 cut(s)	547
SgrBI	CCGCGG	1 cut(s)	547
Sse9I	AATT	3 cut(s)	96, 601, 705
SsiI	CCGC	4 cut(s)	441, 544, 546, 801
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	3 cut(s)	87, 264, 341
StyD4I	CCNGG	2 cut(s)	504, 782
TaaI	ACNGT	3 cut(s)	104, 453, 676
TaiI	ACGT	3 cut(s)	249, 412, 795
TaqI	TCGA	2 cut(s)	393, 669
TasI	AATT	3 cut(s)	96, 601, 705
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	4 cut(s)	124, 510, 569, 741
Tru1I	TTAA	2 cut(s)	275, 762
Tru9I	TTAA	2 cut(s)	275, 762
TscAI	CASTG	2 cut(s)	244, 681
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	5 cut(s)	68, 353, 356, 533, 719
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	17, 158, 768
TspRI	CASTG	2 cut(s)	244, 681
Tth111I	GACNNNGTC	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	3 cut(s)	87, 264, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.