Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464651.1

Orthogroup ID

OG0006347

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1888

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464651.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ggagaaacagtgaccccaagcaagctggaagagaataagatgtaccctttagtatatgcaggggatgttgttaaccctggtgtagcccaaaatctgacaggacaatgcctcgcaggctctctttcacctgacaaagttaagggaaagatagtgttctgcaggagaggtgctgggatgagagtttcaaaaggcatggaagtgaaaagggcgggtggtgttggttttatcttaggaaacagcaaagcaaatggcgttgaaatctcgtgtgacgctcatgttcttcctgccactgcaatgacatacagtaatgccaatagaatcatggaatacatcaactctaccaaaaatccaaaggcaactattataccagcaaggacagtgttgaatacaaagccagctccatacatgactgctttcactagtagaggtccaagtacgattgatcctaacattctcaagcctgatatcacagctcctggactgaatatattggcagcatggactgaggctgatccccctaccaagttgtcaatggatcaccgagtagctcagtataacatcgagtctggaacttcaatgtcttgccctcacattgctgcagcggcagcacttcttaaagccatccaccccacttggagcagtgctgccatcaaatcggctctaatgaccacagcggggatacgaaacaacctagataagctattgaacgatgaatcgggcaatgctgcaactccctttgcatatggtgctggccacttccgacccaccaaggcagcagaccctggccttgtgtacgatgcttcatacaaagactatcttctctacttctgcagtactggagtcaagaatttcgatccaaatttcaagtgtccaagatcaccaccaacagcaatcaacctgaactatccttccattgcaatccccaaactgaatggcaccatcacgattaagaggacagtcacaaatgttggtgaccccaaaagcgtttacttctttacctccaaaccgcctcttggaatctcggttaaggcctctccgagtatattgttctttgatcacgttggccagaggaagagcttcaccattaatgtcaaagcaaggacgtcagagatgcttaacgagaatcagttgaaagatgagtatgcatttgggtggtacacatggactgatggacgtcatattgtaaggagtccaattgcagtctctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

403

Amino Acids

43.44

Weight (kDa)

9.45

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45650 AT5G45650
fragaria_vesca	FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g33200
malus_domestica	MD00G1093400.v1.1 MD10G1270100.v1.1
prunus_persica	Prupe.4G071500_v2.0.a1
pyrus_communis	pycom05g27040 pycom10g22620
rosa_chinensis	RchiOBHm_Chr5g0012581
rosa_laevigata	RLG00000031926
rosa_multiflora	Rmu_co8464651.1_g000001 Rmu_sc0002639.1_g000013 Rmu_sc0003577.1_g000010
rosa_roxburghii	Rroxscaffold_1G00064090
rosa_rugosa	Rorug05G0002700 Rorug05G0002700 Rorug05G0002700
rosa_samantha	Rh5AG096500 Rh5CG105600 Rh5DG092200
rosa_wichuraiana	Rw5G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1106, 1177
AccB1I	GGYRCC	1 cut(s)	935
AciI	CCGC	4 cut(s)	209, 602, 674, 1007
AclWI	GGATC	4 cut(s)	437, 506, 543, 848
AcoI	YGGCCR	2 cut(s)	751, 1063
AcsI	RAATTY	2 cut(s)	847, 859
AcyI	GRCGYC	2 cut(s)	1103, 1174
AfaI	GTAC	5 cut(s)	44, 436, 794, 835, 1157
AfiI	CCNNNNNNNGG	2 cut(s)	675, 1013
AgsI	TTSAA	7 cut(s)	186, 257, 385, 576, 706, 865, 1132
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	3 cut(s)	76, 475, 781
AloI	GAACNNNNNNTCC	2 cut(s)	893, 925
AluBI	AGCT	6 cut(s)	25, 398, 473, 548, 700, 1077
AluI	AGCT	6 cut(s)	25, 398, 473, 548, 700, 1077
Alw26I	GTCTC	1 cut(s)	1207
AlwI	GGATC	4 cut(s)	437, 506, 543, 848
AlwNI	CAGNNNCTG	2 cut(s)	476, 782
AoxI	GGCC	4 cut(s)	751, 784, 1029, 1063
ApeKI	GCWGC	7 cut(s)	494, 596, 599, 605, 644, 725, 773
ApoI	RAATTY	2 cut(s)	847, 859
AseI	ATTAAT	1 cut(s)	1086
Asp700I	GAANNNNTTC	1 cut(s)	1076
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	5 cut(s)	117, 530, 870, 983, 1072
AvaII	GGWCC	1 cut(s)	428
BalI	TGGCCA	2 cut(s)	753, 1065
BanI	GGYRCC	1 cut(s)	935
BauI	CACGAG	1 cut(s)	262
BbvI	GCAGC	7 cut(s)	506, 583, 611, 617, 631, 712, 785
BccI	CCATC	4 cut(s)	629, 656, 947, 1163
BciT130I	CCWGG	3 cut(s)	78, 477, 783
BciVI	GTATCC	1 cut(s)	672
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	1207
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	2 cut(s)	420, 692
BfmI	CTRYAG	3 cut(s)	157, 597, 829
BfuI	GTATCC	1 cut(s)	672
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	8 cut(s)	495, 597, 600, 603, 606, 645, 726, 774
BlsI	GCNGC	8 cut(s)	496, 598, 601, 604, 607, 646, 727, 775
BmcAI	AGTACT	1 cut(s)	835
Bme1390I	CCNGG	3 cut(s)	78, 477, 783
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	937
BmrFI	CCNGG	3 cut(s)	78, 477, 783
BmsI	GCATC	2 cut(s)	787, 1101
BpmI	CTGGAG	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	440
BsaHI	GRCGYC	2 cut(s)	1103, 1174
BsaJI	CCNNGG	3 cut(s)	76, 768, 781
BsaXI	ACNNNNNCTCC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	675, 1013
Bse1I	ACTGG	1 cut(s)	841
Bse3DI	GCAATG	4 cut(s)	300, 591, 727, 912
BseBI	CCWGG	3 cut(s)	78, 477, 783
BseDI	CCNNGG	3 cut(s)	76, 768, 781
BseGI	GGATG	3 cut(s)	70, 180, 621
BseLI	CCNNNNNNNGG	2 cut(s)	675, 1013
BseMI	GCAATG	4 cut(s)	300, 591, 727, 912
BseMII	CTCAG	2 cut(s)	495, 563
BseNI	ACTGG	1 cut(s)	841
BseXI	GCAGC	7 cut(s)	506, 583, 611, 617, 631, 712, 785
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	4 cut(s)	753, 786, 1031, 1065
BshNI	GGYRCC	1 cut(s)	935
BslI	CCNNNNNNNGG	2 cut(s)	675, 1013
BsmAI	GTCTC	1 cut(s)	1207
BsnI	GGCC	4 cut(s)	753, 786, 1031, 1065
Bsp143I	GATC	6 cut(s)	442, 511, 535, 853, 875, 1054
BspACI	CCGC	4 cut(s)	209, 602, 674, 1007
BspANI	GGCC	4 cut(s)	753, 786, 1031, 1065
BspCNI	CTCAG	2 cut(s)	496, 562
BspLI	GGNNCC	1 cut(s)	937
BspMAI	CTGCAG	3 cut(s)	161, 601, 833
BspPI	GGATC	4 cut(s)	437, 506, 543, 848
BspQI	GCTCTTC	1 cut(s)	1067
BspT107I	GGYRCC	1 cut(s)	935
BsrDI	GCAATG	4 cut(s)	300, 591, 727, 912
BsrI	ACTGG	1 cut(s)	841
BssECI	CCNNGG	3 cut(s)	76, 768, 781
BssMI	GATC	6 cut(s)	442, 511, 535, 853, 875, 1054
BssNI	GRCGYC	2 cut(s)	1103, 1174
BssSI	CACGAG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	768
Bst2BI	CACGAG	1 cut(s)	262
Bst2UI	CCWGG	3 cut(s)	78, 477, 783
Bst4CI	ACNGT	4 cut(s)	10, 305, 379, 958
Bst6I	CTCTTC	2 cut(s)	24, 1067
BstACI	GRCGYC	2 cut(s)	1103, 1174
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	4 cut(s)	23, 115, 396, 751
BstDEI	CTNAG	3 cut(s)	229, 504, 549
BstEII	GGTNACC	1 cut(s)	971
BstF5I	GGATG	3 cut(s)	70, 180, 621
BstKTI	GATC	6 cut(s)	445, 514, 538, 856, 878, 1057
BstMAI	GTCTC	1 cut(s)	1207
BstMBI	GATC	6 cut(s)	442, 511, 535, 853, 875, 1054
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 602, 605, 746
BstNI	CCWGG	3 cut(s)	78, 477, 783
BstPI	GGTNACC	1 cut(s)	971
BstSCI	CCNGG	3 cut(s)	76, 475, 781
BstSFI	CTRYAG	3 cut(s)	157, 597, 829
BstV1I	GCAGC	7 cut(s)	506, 583, 611, 617, 631, 712, 785
BsuI	GTATCC	1 cut(s)	672
BsuRI	GGCC	4 cut(s)	753, 786, 1031, 1065
BtsCI	GGATG	3 cut(s)	70, 180, 621
BtsI	GCAGTG	2 cut(s)	288, 646
BtsIMutI	CAGTG	4 cut(s)	15, 288, 384, 646
Cac8I	GCNNGC	4 cut(s)	23, 115, 396, 751
CaiI	CAGNNNCTG	2 cut(s)	476, 782
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	5 cut(s)	43, 435, 793, 834, 1156
CspCI	CAANNNNNGTGG	2 cut(s)	614, 649
CviAII	CATG	6 cut(s)	193, 275, 322, 406, 498, 1161
CviQI	GTAC	5 cut(s)	43, 435, 793, 834, 1156
DdeI	CTNAG	3 cut(s)	229, 504, 549
DpnI	GATC	6 cut(s)	444, 513, 537, 855, 877, 1056
DpnII	GATC	6 cut(s)	442, 511, 535, 853, 875, 1054
EaeI	YGGCCR	2 cut(s)	751, 1063
Eam1104I	CTCTTC	2 cut(s)	24, 1067
EarI	CTCTTC	2 cut(s)	24, 1067
Eco130I	CCWWGG	1 cut(s)	768
Eco147I	AGGCCT	1 cut(s)	1031
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	971
EcoO65I	GGTNACC	1 cut(s)	971
EcoRII	CCWGG	3 cut(s)	76, 475, 781
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	768
EcoT22I	ATGCAT	1 cut(s)	1147
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	6 cut(s)	196, 278, 325, 409, 501, 1164
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FatI	CATG	6 cut(s)	192, 274, 321, 405, 497, 1160
FauI	CCCGC	2 cut(s)	202, 667
FauNDI	CATATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	8 cut(s)	495, 597, 600, 603, 606, 645, 726, 774
FokI	GGATG	3 cut(s)	77, 187, 608
Fsp4HI	GCNGC	8 cut(s)	495, 597, 600, 603, 606, 645, 726, 774
FspBI	CTAG	2 cut(s)	420, 692
GluI	GCNGC	8 cut(s)	495, 597, 600, 603, 606, 645, 726, 774
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	858
HaeIII	GGCC	4 cut(s)	753, 786, 1031, 1065
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	2 cut(s)	1103, 1174
Hin1II	CATG	6 cut(s)	196, 278, 325, 409, 501, 1164
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	7 cut(s)	318, 563, 713, 840, 1017, 1123, 1189
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	5 cut(s)	117, 530, 870, 983, 1072
Hpy166II	GTNNAC	4 cut(s)	73, 793, 988, 1158
Hpy188I	TCNGA	4 cut(s)	96, 761, 1038, 1108
Hpy188III	TCNNGA	3 cut(s)	567, 844, 943
Hpy8I	GTNNAC	4 cut(s)	73, 793, 988, 1158
HpyAV	CCTTC	1 cut(s)	918
HpyCH4III	ACNGT	4 cut(s)	10, 305, 379, 958
HpyCH4IV	ACGT	3 cut(s)	1059, 1103, 1174
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 602, 605, 746
HpyF3I	CTNAG	3 cut(s)	229, 504, 549
HpySE526I	ACGT	3 cut(s)	1059, 1103, 1174
Hsp92I	GRCGYC	2 cut(s)	1103, 1174
Hsp92II	CATG	6 cut(s)	196, 278, 325, 409, 501, 1164
Ksp22I	TGATCA	1 cut(s)	1054
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	442, 511, 535, 853, 875, 1054
LguI	GCTCTTC	1 cut(s)	1067
LmnI	GCTCC	3 cut(s)	403, 478, 636
Lsp1109I	GCAGC	7 cut(s)	506, 583, 611, 617, 631, 712, 785
LweI	GCATC	2 cut(s)	787, 1101
MaeI	CTAG	2 cut(s)	420, 692
MaeII	ACGT	3 cut(s)	1059, 1103, 1174
MaeIII	GTNAC	4 cut(s)	10, 266, 958, 971
MalI	GATC	6 cut(s)	444, 513, 537, 855, 877, 1056
MboI	GATC	6 cut(s)	442, 511, 535, 853, 875, 1054
MboII	GAAGA	4 cut(s)	41, 272, 809, 1084
MfeI	CAATTG	1 cut(s)	1194
MlsI	TGGCCA	2 cut(s)	753, 1065
MluCI	AATT	3 cut(s)	847, 859, 1194
MluNI	TGGCCA	2 cut(s)	753, 1065
MlyI	GAGTC	3 cut(s)	572, 849, 1198
MmeI	TCCRAC	1 cut(s)	784
Mox20I	TGGCCA	2 cut(s)	753, 1065
Mph1103I	ATGCAT	1 cut(s)	1147
MroXI	GAANNNNTTC	1 cut(s)	1076
MscI	TGGCCA	2 cut(s)	753, 1065
MseI	TTAA	7 cut(s)	72, 138, 615, 948, 1026, 1086, 1116
MslI	CAYNNNNRTG	3 cut(s)	197, 293, 1150
Msp20I	TGGCCA	2 cut(s)	753, 1065
MspA1I	CMGCKG	2 cut(s)	602, 674
MspR9I	CCNGG	3 cut(s)	78, 477, 783
MunI	CAATTG	1 cut(s)	1194
MvaI	CCWGG	3 cut(s)	78, 477, 783
MwoI	GCNNNNNNNGC	4 cut(s)	114, 602, 605, 746
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	6 cut(s)	442, 511, 535, 853, 875, 1054
NlaIII	CATG	6 cut(s)	196, 278, 325, 409, 501, 1164
NlaIV	GGNNCC	1 cut(s)	937
NmuCI	GTSAC	4 cut(s)	10, 266, 958, 971
NsiI	ATGCAT	1 cut(s)	1147
PceI	AGGCCT	1 cut(s)	1031
PciSI	GCTCTTC	1 cut(s)	1067
PdmI	GAANNNNTTC	1 cut(s)	1076
PfeI	GAWTC	4 cut(s)	318, 713, 1017, 1123
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	8 cut(s)	496, 598, 601, 604, 607, 646, 727, 775
PleI	GAGTC	3 cut(s)	571, 848, 1197
PpsI	GAGTC	3 cut(s)	571, 848, 1197
PshBI	ATTAAT	1 cut(s)	1086
Psp6I	CCWGG	3 cut(s)	76, 475, 781
PspEI	GGTNACC	1 cut(s)	971
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	3 cut(s)	76, 475, 781
PspN4I	GGNNCC	1 cut(s)	937
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	3 cut(s)	161, 601, 833
PstNI	CAGNNNCTG	2 cut(s)	476, 782
RsaI	GTAC	5 cut(s)	44, 436, 794, 835, 1157
RsaNI	GTAC	5 cut(s)	43, 435, 793, 834, 1156
RseI	CAYNNNNRTG	3 cut(s)	197, 293, 1150
SapI	GCTCTTC	1 cut(s)	1067
SaqAI	TTAA	7 cut(s)	72, 138, 615, 948, 1026, 1086, 1116
SatI	GCNGC	8 cut(s)	495, 597, 600, 603, 606, 645, 726, 774
Sau3AI	GATC	6 cut(s)	442, 511, 535, 853, 875, 1054
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	835
SchI	GAGTC	3 cut(s)	572, 849, 1198
ScrFI	CCNGG	3 cut(s)	78, 477, 783
SfaNI	GCATC	2 cut(s)	787, 1101
SfcI	CTRYAG	3 cut(s)	157, 597, 829
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	3 cut(s)	197, 293, 1150
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	3 cut(s)	847, 859, 1194
SseBI	AGGCCT	1 cut(s)	1031
SsiI	CCGC	4 cut(s)	209, 602, 674, 1007
SspMI	CTAG	2 cut(s)	420, 692
StuI	AGGCCT	1 cut(s)	1031
StyD4I	CCNGG	3 cut(s)	76, 475, 781
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	4 cut(s)	10, 305, 379, 958
TaiI	ACGT	3 cut(s)	1062, 1106, 1177
TaqI	TCGA	2 cut(s)	561, 852
TasI	AATT	3 cut(s)	847, 859, 1194
TatI	WGTACW	1 cut(s)	833
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	4 cut(s)	318, 713, 1017, 1123
Tru1I	TTAA	7 cut(s)	72, 138, 615, 948, 1026, 1086, 1116
Tru9I	TTAA	7 cut(s)	72, 138, 615, 948, 1026, 1086, 1116
TscAI	CASTG	4 cut(s)	15, 295, 384, 646
TseFI	GTSAC	4 cut(s)	10, 266, 958, 971
TseI	GCWGC	7 cut(s)	494, 596, 599, 605, 644, 725, 773
Tsp45I	GTSAC	4 cut(s)	10, 266, 958, 971
TspDTI	ATGAA	2 cut(s)	726, 792
TspRI	CASTG	4 cut(s)	15, 295, 384, 646
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	1086
XapI	RAATTY	2 cut(s)	847, 859
XcmI	CCANNNNNNNNNTGG	2 cut(s)	319, 529
XmnI	GAANNNNTTC	1 cut(s)	1076
XspI	CTAG	2 cut(s)	420, 692
ZraI	GACGTC	2 cut(s)	1104, 1175
ZrmI	AGTACT	1 cut(s)	835
Zsp2I	ATGCAT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.