Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002639.1

Orthogroup ID

OG0006347

Physical Location & Seq

Genomic Coordinates Reverse (-)

43076 .. 44732

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002639.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgtaccctttagtatatgcaggggatgttgttaaccctggtgtagcccaaaatctgacaggacaatgcctcgcaggctctctttcacctgacaaagttaagggaaagatagtgttctgccggagaggtgctgggatgagagtttcaaaaggcatggaagtgaaaagggcgggtggtgttggttttatcttaggaaacagcaaagcaaatggcgttgaaatctcgtgtgacgctcatgttcttcctgccactgcaatgacatacagtaatgccaatagaatcatggaatacatcaactctaccaaaaatccaaaggcaactattataccagcaaggacagtgttgaatacaaagccagctccatacatgactgctttcactagtagaggtccaagtacgattgatcctaacattctcaagcctgatatcacagctcctggactgaatatattggcagcatggactgaggctgatccccctaccaagttgtcaatggatcaccgagtagctcagtataacatcgagtctggaacttcaatgtcttgccctcacattgctgcagcggcagcacttcttaaagccatccaccccacttggagcagtgctgccatcaaatcggctctaatgaccacagcggggatacgaaacaacctagataagctattgaacgatgaatcgggcaatgctgcaactccctttgcatatggtgctggccacttccgacccaccaaggcagcagaccctggccttgtgtacgatgcttcatacaaagactatcttctctacttctgcagtactggagtcaagaatttcgatccaaatttcaagtgtccaagatcaccaccaacagcaatcaacctgaactatccttccattgcaatccccaaactgaatggcaccatcacgattaagaggacagtcacaaatgttggtgaccccaaaagcgtttacttctttacctccaaaccgcctcttggaatctcggttaaggcctctccgagtatattgttctttgatcacgttggccagaggaagagcttcaccattactgtcaaagcaaggacgtcagagatgcttaacgagaatcagttgaaagatgagtatgcatttgggtggtacacatggactgatggacgtcatattgtaaggagtccaattgcagtctctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

390

Amino Acids

42.01

Weight (kDa)

9.53

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45650 AT5G45650
fragaria_vesca	FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g33200
malus_domestica	MD00G1093400.v1.1 MD10G1270100.v1.1
prunus_persica	Prupe.4G071500_v2.0.a1
pyrus_communis	pycom05g27040 pycom10g22620
rosa_chinensis	RchiOBHm_Chr5g0012581
rosa_laevigata	RLG00000031926
rosa_multiflora	Rmu_co8464651.1_g000001 Rmu_sc0002639.1_g000013 Rmu_sc0003577.1_g000010
rosa_roxburghii	Rroxscaffold_1G00064090
rosa_rugosa	Rorug05G0002700 Rorug05G0002700 Rorug05G0002700
rosa_samantha	Rh5AG096500 Rh5CG105600 Rh5DG092200
rosa_wichuraiana	Rw5G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1067, 1138
AccB1I	GGYRCC	1 cut(s)	896
AciI	CCGC	4 cut(s)	170, 563, 635, 968
AclWI	GGATC	4 cut(s)	398, 467, 504, 809
AcoI	YGGCCR	2 cut(s)	712, 1024
AcsI	RAATTY	2 cut(s)	808, 820
AcyI	GRCGYC	2 cut(s)	1064, 1135
AfaI	GTAC	5 cut(s)	5, 397, 755, 796, 1118
AfiI	CCNNNNNNNGG	2 cut(s)	636, 974
AgsI	TTSAA	7 cut(s)	147, 218, 346, 537, 667, 826, 1093
AhlI	ACTAGT	1 cut(s)	380
AjnI	CCWGG	3 cut(s)	37, 436, 742
AloI	GAACNNNNNNTCC	2 cut(s)	854, 886
AluBI	AGCT	5 cut(s)	359, 434, 509, 661, 1038
AluI	AGCT	5 cut(s)	359, 434, 509, 661, 1038
Alw26I	GTCTC	1 cut(s)	1168
AlwI	GGATC	4 cut(s)	398, 467, 504, 809
AlwNI	CAGNNNCTG	2 cut(s)	437, 743
AoxI	GGCC	4 cut(s)	712, 745, 990, 1024
ApeKI	GCWGC	7 cut(s)	455, 557, 560, 566, 605, 686, 734
ApoI	RAATTY	2 cut(s)	808, 820
Asp700I	GAANNNNTTC	1 cut(s)	1037
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	5 cut(s)	78, 491, 831, 944, 1033
AvaII	GGWCC	1 cut(s)	389
BalI	TGGCCA	2 cut(s)	714, 1026
BanI	GGYRCC	1 cut(s)	896
BauI	CACGAG	1 cut(s)	223
BbvI	GCAGC	7 cut(s)	467, 544, 572, 578, 592, 673, 746
BccI	CCATC	4 cut(s)	590, 617, 908, 1124
BciT130I	CCWGG	3 cut(s)	39, 438, 744
BciVI	GTATCC	1 cut(s)	633
BclI	TGATCA	1 cut(s)	1015
BcoDI	GTCTC	1 cut(s)	1168
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	2 cut(s)	381, 653
BfmI	CTRYAG	2 cut(s)	558, 790
BfuI	GTATCC	1 cut(s)	633
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	8 cut(s)	456, 558, 561, 564, 567, 606, 687, 735
BlsI	GCNGC	8 cut(s)	457, 559, 562, 565, 568, 607, 688, 736
BmcAI	AGTACT	1 cut(s)	796
Bme1390I	CCNGG	3 cut(s)	39, 438, 744
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	898
BmrFI	CCNGG	3 cut(s)	39, 438, 744
BmsI	GCATC	2 cut(s)	748, 1062
BpmI	CTGGAG	1 cut(s)	819
BpuEI	CTTGAG	1 cut(s)	401
BsaHI	GRCGYC	2 cut(s)	1064, 1135
BsaJI	CCNNGG	3 cut(s)	37, 729, 742
Bsc4I	CCNNNNNNNGG	2 cut(s)	636, 974
Bse1I	ACTGG	1 cut(s)	802
Bse3DI	GCAATG	4 cut(s)	261, 552, 688, 873
BseBI	CCWGG	3 cut(s)	39, 438, 744
BseDI	CCNNGG	3 cut(s)	37, 729, 742
BseGI	GGATG	3 cut(s)	31, 141, 582
BseLI	CCNNNNNNNGG	2 cut(s)	636, 974
BseMI	GCAATG	4 cut(s)	261, 552, 688, 873
BseMII	CTCAG	2 cut(s)	456, 524
BseNI	ACTGG	1 cut(s)	802
BseXI	GCAGC	7 cut(s)	467, 544, 572, 578, 592, 673, 746
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	4 cut(s)	714, 747, 992, 1026
BshNI	GGYRCC	1 cut(s)	896
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	636, 974
BsmAI	GTCTC	1 cut(s)	1168
BsnI	GGCC	4 cut(s)	714, 747, 992, 1026
Bsp143I	GATC	6 cut(s)	403, 472, 496, 814, 836, 1015
BspACI	CCGC	4 cut(s)	170, 563, 635, 968
BspANI	GGCC	4 cut(s)	714, 747, 992, 1026
BspCNI	CTCAG	2 cut(s)	457, 523
BspLI	GGNNCC	1 cut(s)	898
BspMAI	CTGCAG	2 cut(s)	562, 794
BspPI	GGATC	4 cut(s)	398, 467, 504, 809
BspQI	GCTCTTC	1 cut(s)	1028
BspT107I	GGYRCC	1 cut(s)	896
BsrDI	GCAATG	4 cut(s)	261, 552, 688, 873
BsrI	ACTGG	1 cut(s)	802
BssECI	CCNNGG	3 cut(s)	37, 729, 742
BssMI	GATC	6 cut(s)	403, 472, 496, 814, 836, 1015
BssNI	GRCGYC	2 cut(s)	1064, 1135
BssSI	CACGAG	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	729
Bst2BI	CACGAG	1 cut(s)	223
Bst2UI	CCWGG	3 cut(s)	39, 438, 744
Bst4CI	ACNGT	4 cut(s)	266, 340, 919, 1051
Bst6I	CTCTTC	1 cut(s)	1028
BstACI	GRCGYC	2 cut(s)	1064, 1135
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	3 cut(s)	76, 357, 712
BstDEI	CTNAG	3 cut(s)	190, 465, 510
BstEII	GGTNACC	1 cut(s)	932
BstF5I	GGATG	3 cut(s)	31, 141, 582
BstKTI	GATC	6 cut(s)	406, 475, 499, 817, 839, 1018
BstMAI	GTCTC	1 cut(s)	1168
BstMBI	GATC	6 cut(s)	403, 472, 496, 814, 836, 1015
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 563, 566, 707
BstNI	CCWGG	3 cut(s)	39, 438, 744
BstPI	GGTNACC	1 cut(s)	932
BstSCI	CCNGG	3 cut(s)	37, 436, 742
BstSFI	CTRYAG	2 cut(s)	558, 790
BstV1I	GCAGC	7 cut(s)	467, 544, 572, 578, 592, 673, 746
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	4 cut(s)	714, 747, 992, 1026
BtsCI	GGATG	3 cut(s)	31, 141, 582
BtsI	GCAGTG	2 cut(s)	249, 607
BtsIMutI	CAGTG	3 cut(s)	249, 345, 607
Cac8I	GCNNGC	3 cut(s)	76, 357, 712
CaiI	CAGNNNCTG	2 cut(s)	437, 743
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	5 cut(s)	4, 396, 754, 795, 1117
CspCI	CAANNNNNGTGG	2 cut(s)	575, 610
CviAII	CATG	6 cut(s)	154, 236, 283, 367, 459, 1122
CviQI	GTAC	5 cut(s)	4, 396, 754, 795, 1117
DdeI	CTNAG	3 cut(s)	190, 465, 510
DpnI	GATC	6 cut(s)	405, 474, 498, 816, 838, 1017
DpnII	GATC	6 cut(s)	403, 472, 496, 814, 836, 1015
EaeI	YGGCCR	2 cut(s)	712, 1024
Eam1104I	CTCTTC	1 cut(s)	1028
EarI	CTCTTC	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	729
Eco147I	AGGCCT	1 cut(s)	992
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	932
EcoO65I	GGTNACC	1 cut(s)	932
EcoRII	CCWGG	3 cut(s)	37, 436, 742
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	729
EcoT22I	ATGCAT	1 cut(s)	1108
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	6 cut(s)	157, 239, 286, 370, 462, 1125
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FatI	CATG	6 cut(s)	153, 235, 282, 366, 458, 1121
FauI	CCCGC	2 cut(s)	163, 628
FauNDI	CATATG	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	1015
Fnu4HI	GCNGC	8 cut(s)	456, 558, 561, 564, 567, 606, 687, 735
FokI	GGATG	3 cut(s)	38, 148, 569
Fsp4HI	GCNGC	8 cut(s)	456, 558, 561, 564, 567, 606, 687, 735
FspBI	CTAG	2 cut(s)	381, 653
GluI	GCNGC	8 cut(s)	456, 558, 561, 564, 567, 606, 687, 735
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	4 cut(s)	714, 747, 992, 1026
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	2 cut(s)	1064, 1135
Hin1II	CATG	6 cut(s)	157, 239, 286, 370, 462, 1125
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	7 cut(s)	279, 524, 674, 801, 978, 1084, 1150
HpaI	GTTAAC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	5 cut(s)	78, 491, 831, 944, 1033
Hpy166II	GTNNAC	4 cut(s)	34, 754, 949, 1119
Hpy188I	TCNGA	4 cut(s)	57, 722, 999, 1069
Hpy188III	TCNNGA	3 cut(s)	528, 805, 904
Hpy8I	GTNNAC	4 cut(s)	34, 754, 949, 1119
HpyAV	CCTTC	1 cut(s)	879
HpyCH4III	ACNGT	4 cut(s)	266, 340, 919, 1051
HpyCH4IV	ACGT	3 cut(s)	1020, 1064, 1135
HpyCH4V	TGCA	9 cut(s)	20, 254, 560, 689, 701, 792, 878, 1106, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 563, 566, 707
HpyF3I	CTNAG	3 cut(s)	190, 465, 510
HpySE526I	ACGT	3 cut(s)	1020, 1064, 1135
Hsp92I	GRCGYC	2 cut(s)	1064, 1135
Hsp92II	CATG	6 cut(s)	157, 239, 286, 370, 462, 1125
Ksp22I	TGATCA	1 cut(s)	1015
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	6 cut(s)	403, 472, 496, 814, 836, 1015
LguI	GCTCTTC	1 cut(s)	1028
LmnI	GCTCC	3 cut(s)	364, 439, 597
Lsp1109I	GCAGC	7 cut(s)	467, 544, 572, 578, 592, 673, 746
LweI	GCATC	2 cut(s)	748, 1062
MaeI	CTAG	2 cut(s)	381, 653
MaeII	ACGT	3 cut(s)	1020, 1064, 1135
MaeIII	GTNAC	3 cut(s)	227, 919, 932
MalI	GATC	6 cut(s)	405, 474, 498, 816, 838, 1017
MboI	GATC	6 cut(s)	403, 472, 496, 814, 836, 1015
MboII	GAAGA	3 cut(s)	233, 770, 1045
MfeI	CAATTG	1 cut(s)	1155
MlsI	TGGCCA	2 cut(s)	714, 1026
MluCI	AATT	3 cut(s)	808, 820, 1155
MluNI	TGGCCA	2 cut(s)	714, 1026
MlyI	GAGTC	3 cut(s)	533, 810, 1159
MmeI	TCCRAC	1 cut(s)	745
Mox20I	TGGCCA	2 cut(s)	714, 1026
Mph1103I	ATGCAT	1 cut(s)	1108
MroXI	GAANNNNTTC	1 cut(s)	1037
MscI	TGGCCA	2 cut(s)	714, 1026
MseI	TTAA	6 cut(s)	33, 99, 576, 909, 987, 1077
MslI	CAYNNNNRTG	3 cut(s)	158, 254, 1111
Msp20I	TGGCCA	2 cut(s)	714, 1026
MspA1I	CMGCKG	2 cut(s)	563, 635
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	3 cut(s)	39, 438, 744
MunI	CAATTG	1 cut(s)	1155
MvaI	CCWGG	3 cut(s)	39, 438, 744
MwoI	GCNNNNNNNGC	4 cut(s)	75, 563, 566, 707
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	6 cut(s)	403, 472, 496, 814, 836, 1015
NlaIII	CATG	6 cut(s)	157, 239, 286, 370, 462, 1125
NlaIV	GGNNCC	1 cut(s)	898
NmuCI	GTSAC	3 cut(s)	227, 919, 932
NsiI	ATGCAT	1 cut(s)	1108
PceI	AGGCCT	1 cut(s)	992
PciSI	GCTCTTC	1 cut(s)	1028
PdmI	GAANNNNTTC	1 cut(s)	1037
PfeI	GAWTC	4 cut(s)	279, 674, 978, 1084
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	8 cut(s)	457, 559, 562, 565, 568, 607, 688, 736
PleI	GAGTC	3 cut(s)	532, 809, 1158
PpsI	GAGTC	3 cut(s)	532, 809, 1158
Psp6I	CCWGG	3 cut(s)	37, 436, 742
PspEI	GGTNACC	1 cut(s)	932
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	3 cut(s)	37, 436, 742
PspN4I	GGNNCC	1 cut(s)	898
PspPI	GGNCC	1 cut(s)	389
PstI	CTGCAG	2 cut(s)	562, 794
PstNI	CAGNNNCTG	2 cut(s)	437, 743
RsaI	GTAC	5 cut(s)	5, 397, 755, 796, 1118
RsaNI	GTAC	5 cut(s)	4, 396, 754, 795, 1117
RseI	CAYNNNNRTG	3 cut(s)	158, 254, 1111
SapI	GCTCTTC	1 cut(s)	1028
SaqAI	TTAA	6 cut(s)	33, 99, 576, 909, 987, 1077
SatI	GCNGC	8 cut(s)	456, 558, 561, 564, 567, 606, 687, 735
Sau3AI	GATC	6 cut(s)	403, 472, 496, 814, 836, 1015
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	796
SchI	GAGTC	3 cut(s)	533, 810, 1159
ScrFI	CCNGG	3 cut(s)	39, 438, 744
SfaNI	GCATC	2 cut(s)	748, 1062
SfcI	CTRYAG	2 cut(s)	558, 790
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	3 cut(s)	158, 254, 1111
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	3 cut(s)	808, 820, 1155
SseBI	AGGCCT	1 cut(s)	992
SsiI	CCGC	4 cut(s)	170, 563, 635, 968
SspMI	CTAG	2 cut(s)	381, 653
StuI	AGGCCT	1 cut(s)	992
StyD4I	CCNGG	3 cut(s)	37, 436, 742
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	4 cut(s)	266, 340, 919, 1051
TaiI	ACGT	3 cut(s)	1023, 1067, 1138
TaqI	TCGA	2 cut(s)	522, 813
TasI	AATT	3 cut(s)	808, 820, 1155
TatI	WGTACW	1 cut(s)	794
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	4 cut(s)	279, 674, 978, 1084
Tru1I	TTAA	6 cut(s)	33, 99, 576, 909, 987, 1077
Tru9I	TTAA	6 cut(s)	33, 99, 576, 909, 987, 1077
TscAI	CASTG	3 cut(s)	256, 345, 607
TseFI	GTSAC	3 cut(s)	227, 919, 932
TseI	GCWGC	7 cut(s)	455, 557, 560, 566, 605, 686, 734
Tsp45I	GTSAC	3 cut(s)	227, 919, 932
TspDTI	ATGAA	2 cut(s)	687, 753
TspRI	CASTG	3 cut(s)	256, 345, 607
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	2 cut(s)	808, 820
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 490
XmnI	GAANNNNTTC	1 cut(s)	1037
XspI	CTAG	2 cut(s)	381, 653
ZraI	GACGTC	2 cut(s)	1065, 1136
ZrmI	AGTACT	1 cut(s)	796
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.