Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006347

Physical Location & Seq

Genomic Coordinates Reverse (-)

169615 .. 175504

Gene Structure 5890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0002700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGAAGCTGGTGGTTCAAGTGATGGGGGCTCGAGATCTGCCGGCAATGGATCTAAACGGGCTGAGTGATCCGTACGTGAAGGTGAAGATGGGAAAGCAGAAGTTCAAGACCAAAGTGGTGAAGAAGACCTTAAACCCATATTGGGGTGAAGAGTTCACGTTTCGAGTCGACGACCTCAACGACGAGCTCCTCATCTCTTGTTTGGATGAAGATAAGTACTTCAACGACGACTTCGTGGGCTGCGTCAAATTCCCTGTTTCCCAAGTCTTCGATTCCCCCAACAAGTGCCTCGACACTTGTTGGCACCCTCTCCAGCCCAAGAGCAAGAAGCCCAAGCACAAGGATTGCGGCGAGATTCTTCTTAATATCTCTCTTAGTACAAACAATGCATTCTCCGACTCCGCTTCCGAGGGTGATCATATCAGGAGGGATTCCGACATTGGAGGTGAATCACCCTCAAGGTTATCCGAAACGGCTTCCCCTCAGAGAGGCAAGCTTGATGAACTTCCATTCTCCGAAAAGGAAAAGACTCTTGCCCAGAAATCCCTTGCTGGCCGACTTGTTCAGATGTTCAATAAAAATCCTGACGCACCTCCAATATCTTCAAACCACTCTAGCAAAGCTGACTTGACTGAGCTTGTTGAAACCAAGGCCGACATTTCTGAGGCCACTTCTGAGGATCACTCCTCTTGTGTTCCTTTTGAAGAGCTAATGAAAACAATGCAGTTACGCGATCAGGCTACCGAAACCCCTGAGAACCTACCGGGTGGAGTGCTTCTAGATCAAATGTATGTTACTGAACCCAAACACCTCAACACTTTACTCTTTTCACCCGATTCTACTTTTCCAAAGGCCTTGGCAGATCTGCATGGAACTACAGAATTGGAACAAGGACCCTGGAAATTTGAAAACGACACCTTAAAAAGAGTGGTTACATATGTTAAGGCAGCTAGCAAATTAATCAAGGCTTGCAAAGGAAGTGAGGACCAAACATATCTCAAAGCCGATGGCAAGGTTTTTGCAGTTTTATCAAGTGTAAGCACTCCTGATGTTCCATATGGCAAAACTTTTAGGACGGAGTTGCTCTACTGCATTACACCTGGGCCTGAGCTGCCATCCGGAGAACAATCTACACGCTTTGTAATATCCTGGCGCATGAATTTTCTGCAGAGCACCATGATGAAAGGAATGATAGAAAATGGAGCTCGCCAAGGTTTAAAGGACAGTTATGAGCAGTATGCTACTTTATTATCGCAGAACGTTAAGCCAGCTGATTCGAAAGACCTTGGATCCAATAAGGACCAGGTTTTGGCATCATTGCAGGCTGAATCCCAGTCTGATTGGAAGCTGGCAGTACAATATTTTGCTAATTTCACTGTGGTCTCCACATTTTTTATTGGATTGTATATGCTGGTACACATCTACCTGGCTACACCCAGCACTATTCAAGGGTTGGAGTTTGTTGGGCTTGACTTGCCAGATTCAATTGGTGAATTCATTGTTTGTGGTGTCCTGGTACTTCAAGGAGAACGTGTGCTGGGTTTGATCTCACGCTTTATGCAGGCCAGAGTGCAGAAAGGCAGTGACCATGGAGTCAAAGCCCGAGGAGATGGTTGGTTGCTAACTGTTGCCTTGATTGAAGGAAGTAATATAGCAGCTGTTGATTCAAGTGGGTTCTCTGATCCATATGTGGTGTTTTCTTGCAATGGAAAAGCTAGAACTAGCTCAATCAAGTTCCAGAAATGTGACCCCATGTGGAATGAAATATTTGAGTTTGATGCAATGGATGAGCCTCCTTCTGTGCTGGATGTGGAAATTTATGATTTTGATGGTCCTTTTGATGAAGCTACCTCTCTGGGCCATGCTGAAATCAATTTTGTGAAAACCAATATATCAGATTTAGCTGATATGTGGATTCCTCTTCAAGGAAAGTTAGCTCAGGCTTGTCAGTCAAAACTCCACTTGAGAATTTTCTTAAACAATACAAGAGGTGGCAATGTTGTTAATCACTTTTTAAATAAGATGGAGAAGGAGGTTGGAAAGAAGATTACTGTACGTTCTCCTCAAACAAATTCAGCATTCCAAAAACTCTTTGGGCTTCCACCAGAGGAATTTCTTATCAACGACTTTACATGTCACTTGAAACGAAAAATGCCCCTGCAGGGCCGCCTATTTCTTTCTGCGAGAATAATTGGGTTCCATGCAAATTTATTTGGTCGCAAGACAAAGTTCTTTTTCCTCTGGGAGGATATAGAAGATATTCATATTGTTCCTCCAACTCTGTCATCTATGGGTAGTCCAACTATAGTCATGACTCTGCGGCAAGGTAGAGGTATGGATGCAAGGCATGGTGCAAAGACACAGGATGAGGAAGGCAGGCTGAAGTTCCACTTCCAGTCCTTCGTATCCTTCAATGTAGCGAACAGGACAATTATGGCCCTGTGGAAGGCTAGATCTTTGAGTCCTGAGCAGAAGGTGCAAATAATAGAAGAAGAATCAGAAGTCAAGAGCCTCCAAACTGAAGAGAGTGGGTCTTTCTTGGGCCTTGATGATGTCAGCATGTCTGAGGTTTATTCATCCTTGCATTCAGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

865

Amino Acids

96.58

Weight (kDa)

5.6

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	2 - 93	1.6e-29	C2 domain
VASt	PF16016	259 - 405	1.8e-32	VAD1 Analog of StAR-related lipid transfer domain
C2	PF00168	540 - 641	3.1e-16	C2 domain
GRAM	PF02893	693 - 800	2.6e-17	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45650 AT5G45650
fragaria_vesca	FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g06570 FvH4_3g33200
malus_domestica	MD00G1093400.v1.1 MD10G1270100.v1.1
prunus_persica	Prupe.4G071500_v2.0.a1
pyrus_communis	pycom05g27040 pycom10g22620
rosa_chinensis	RchiOBHm_Chr5g0012581
rosa_laevigata	RLG00000031926
rosa_multiflora	Rmu_co8464651.1_g000001 Rmu_sc0002639.1_g000013 Rmu_sc0003577.1_g000010
rosa_roxburghii	Rroxscaffold_1G00064090
rosa_rugosa	Rorug05G0002700 Rorug05G0002700 Rorug05G0002700
rosa_samantha	Rh5AG096500 Rh5CG105600 Rh5DG092200
rosa_wichuraiana	Rw5G008450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1592
AccB1I	GGYRCC	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	1309
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	732
AccIII	TCCGGA	1 cut(s)	1118
AciI	CCGC	4 cut(s)	348, 402, 2167, 2320
AclI	AACGTT	1 cut(s)	1260
AclWI	GGATC	6 cut(s)	57, 62, 687, 1284, 1297, 1676
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	9 cut(s)	248, 902, 1159, 1493, 1815, 1968, 2071, 2111, 2206
AcuI	CTGAAG	2 cut(s)	2402, 2541
AfaI	GTAC	7 cut(s)	74, 218, 379, 1356, 1416, 1518, 2055
AfiI	CCNNNNNNNGG	8 cut(s)	142, 143, 488, 1309, 1925, 2162, 2245, 2446
AflIII	ACRYGT	2 cut(s)	1531, 2132
AjnI	CCWGG	6 cut(s)	896, 1099, 1148, 1302, 1425, 1512
Alw21I	GWGCWC	3 cut(s)	189, 1175, 1207
Alw26I	GTCTC	1 cut(s)	1387
AlwI	GGATC	6 cut(s)	57, 62, 687, 1284, 1297, 1676
Ama87I	CYCGRG	2 cut(s)	30, 1602
Aor13HI	TCCGGA	1 cut(s)	1118
ApeKI	GCWGC	4 cut(s)	240, 947, 1111, 1655
ApoI	RAATTY	9 cut(s)	248, 902, 1159, 1493, 1815, 1968, 2071, 2111, 2206
AseI	ATTAAT	1 cut(s)	959
Asp700I	GAANNNNTTC	1 cut(s)	2259
AspLEI	GCGC	1 cut(s)	1155
AspS9I	GGNCC	9 cut(s)	893, 985, 1103, 1300, 1832, 1858, 2164, 2437, 2542
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	8 cut(s)	94, 130, 158, 425, 444, 458, 822, 1502
AsuII	TTCGAA	1 cut(s)	1277
AsuNHI	GCTAGC	1 cut(s)	950
AvaI	CYCGRG	2 cut(s)	30, 1602
AvaII	GGWCC	4 cut(s)	893, 985, 1300, 1832
BamHI	GGATCC	1 cut(s)	1289
BanI	GGYRCC	1 cut(s)	303
BanII	GRGCYC	3 cut(s)	31, 189, 1207
BbsI	GAAGAC	2 cut(s)	131, 259
Bbv12I	GWGCWC	3 cut(s)	189, 1175, 1207
BbvI	GCAGC	4 cut(s)	227, 959, 1098, 1667
BccI	CCATC	7 cut(s)	16, 82, 1001, 1123, 1604, 1823, 2017
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	6 cut(s)	898, 1101, 1150, 1304, 1427, 1514
BciVI	GTATCC	1 cut(s)	2416
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	765
BcoDI	GTCTC	1 cut(s)	1387
BfaI	CTAG	6 cut(s)	615, 779, 951, 1716, 1722, 2451
BfmI	CTRYAG	4 cut(s)	876, 1166, 2159, 2304
BfuI	GTATCC	1 cut(s)	2416
BglII	AGATCT	3 cut(s)	34, 862, 2453
BisI	GCNGC	7 cut(s)	241, 349, 948, 1112, 1656, 2167, 2321
BlsI	GCNGC	7 cut(s)	242, 350, 949, 1113, 1657, 2168, 2322
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	7 cut(s)	765, 898, 1101, 1150, 1304, 1427, 1514
Bme18I	GGWCC	4 cut(s)	893, 985, 1300, 1832
BmeT110I	CYCGRG	2 cut(s)	30, 1602
BmgT120I	GGNCC	9 cut(s)	893, 985, 1103, 1300, 1832, 1858, 2164, 2437, 2542
BmiI	GGNNCC	4 cut(s)	305, 895, 1291, 2198
BmrFI	CCNGG	7 cut(s)	765, 898, 1101, 1150, 1304, 1427, 1514
BmrI	ACTGGG	1 cut(s)	1327
BmsI	GCATC	3 cut(s)	1322, 1768, 2329
BmtI	GCTAGC	1 cut(s)	954
BmuI	ACTGGG	1 cut(s)	1327
BpiI	GAAGAC	2 cut(s)	131, 259
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	3 cut(s)	1107, 1938, 2466
Bpu14I	TTCGAA	1 cut(s)	1277
BpuEI	CTTGAG	2 cut(s)	442, 1984
BpuMI	CCSGG	1 cut(s)	765
BsaAI	YACGTR	1 cut(s)	76
BsaI	GGTCTC	1 cut(s)	1387
BsaJI	CCNNGG	9 cut(s)	408, 648, 855, 896, 1100, 1210, 1285, 1588, 1603
BsaWI	WCCGGW	1 cut(s)	1118
BsaXI	ACNNNNNCTCC	2 cut(s)	1518, 1548
Bsc4I	CCNNNNNNNGG	8 cut(s)	142, 143, 488, 1309, 1925, 2162, 2245, 2446
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	1333, 2395
Bse3DI	GCAATG	5 cut(s)	51, 1316, 1711, 1788, 2002
BseAI	TCCGGA	1 cut(s)	1118
BseBI	CCWGG	6 cut(s)	898, 1101, 1150, 1304, 1427, 1514
BseDI	CCNNGG	9 cut(s)	408, 648, 855, 896, 1100, 1210, 1285, 1588, 1603
BseGI	GGATG	7 cut(s)	211, 1115, 1792, 1813, 2344, 2371, 2576
BseLI	CCNNNNNNNGG	8 cut(s)	142, 143, 488, 1309, 1925, 2162, 2245, 2446
BseMI	GCAATG	5 cut(s)	51, 1316, 1711, 1788, 2002
BseNI	ACTGG	2 cut(s)	1333, 2395
BseRI	GAGGAG	4 cut(s)	179, 676, 1620, 2052
BseXI	GCAGC	4 cut(s)	227, 959, 1098, 1667
BseYI	CCCAGC	2 cut(s)	1436, 1537
BsgI	GTGCAG	1 cut(s)	1592
Bsh1236I	CGCG	1 cut(s)	732
BshNI	GGYRCC	1 cut(s)	303
BsiHKAI	GWGCWC	3 cut(s)	189, 1175, 1207
BsiHKCI	CYCGRG	2 cut(s)	30, 1602
BsiSI	CCGG	3 cut(s)	41, 764, 1119
BsiWI	CGTACG	1 cut(s)	72
BslI	CCNNNNNNNGG	8 cut(s)	142, 143, 488, 1309, 1925, 2162, 2245, 2446
BsmAI	GTCTC	1 cut(s)	1387
BsmI	GAATGC	3 cut(s)	389, 2078, 2584
Bso31I	GGTCTC	1 cut(s)	1387
BsoBI	CYCGRG	2 cut(s)	30, 1602
Bsp119I	TTCGAA	1 cut(s)	1277
Bsp1286I	GDGCHC	4 cut(s)	31, 189, 1175, 1207
Bsp13I	TCCGGA	1 cut(s)	1118
Bsp19I	CCATGG	1 cut(s)	1588
BspACI	CCGC	4 cut(s)	348, 402, 2167, 2320
BspEI	TCCGGA	1 cut(s)	1118
BspFNI	CGCG	1 cut(s)	732
BspHI	TCATGA	1 cut(s)	2310
BspLI	GGNNCC	4 cut(s)	305, 895, 1291, 2198
BspMAI	CTGCAG	2 cut(s)	1170, 2163
BspOI	GCTAGC	1 cut(s)	954
BspPI	GGATC	6 cut(s)	57, 62, 687, 1284, 1297, 1676
BspQI	GCTCTTC	1 cut(s)	699
BspT104I	TTCGAA	1 cut(s)	1277
BspT107I	GGYRCC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	1387
BsrDI	GCAATG	5 cut(s)	51, 1316, 1711, 1788, 2002
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	1333, 2395
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	9 cut(s)	408, 648, 855, 896, 1100, 1210, 1285, 1588, 1603
BssT1I	CCWWGG	5 cut(s)	648, 855, 1210, 1285, 1588
Bst2UI	CCWGG	6 cut(s)	898, 1101, 1150, 1304, 1427, 1514
Bst4CI	ACNGT	4 cut(s)	1226, 1378, 1627, 2053
Bst6I	CTCTTC	4 cut(s)	144, 699, 1926, 2517
BstAPI	GCANNNNNTGC	1 cut(s)	2476
BstBAI	YACGTR	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	1277
BstDSI	CCRYGG	1 cut(s)	1588
BstENI	CCTNNNNNAGG	4 cut(s)	486, 1923, 2243, 2444
BstF5I	GGATG	7 cut(s)	211, 1115, 1792, 1813, 2344, 2371, 2576
BstFNI	CGCG	1 cut(s)	732
BstHHI	GCGC	1 cut(s)	1155
BstMAI	GTCTC	1 cut(s)	1387
BstMWI	GCNNNNNNNGC	3 cut(s)	1111, 1474, 2476
BstNI	CCWGG	6 cut(s)	898, 1101, 1150, 1304, 1427, 1514
BstNSI	RCATGY	2 cut(s)	2136, 2563
BstSCI	CCNGG	7 cut(s)	763, 896, 1099, 1148, 1302, 1425, 1512
BstSFI	CTRYAG	4 cut(s)	876, 1166, 2159, 2304
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	4 cut(s)	227, 959, 1098, 1667
BstV2I	GAAGAC	2 cut(s)	131, 259
BstX2I	RGATCY	5 cut(s)	34, 49, 862, 1289, 2453
BstYI	RGATCY	5 cut(s)	34, 49, 862, 1289, 2453
BsuI	GTATCC	1 cut(s)	2416
BtgI	CCRYGG	1 cut(s)	1588
BtsCI	GGATG	7 cut(s)	211, 1115, 1792, 1813, 2344, 2371, 2576
BtsI	GCAGTG	1 cut(s)	1588
BtsIMutI	CAGTG	2 cut(s)	1374, 1588
CciI	TCATGA	1 cut(s)	2310
CfoI	GCGC	1 cut(s)	1155
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	9 cut(s)	893, 985, 1103, 1300, 1832, 1858, 2164, 2437, 2542
CseI	GACGC	2 cut(s)	232, 596
CsiI	ACCWGGT	1 cut(s)	1302
Csp6I	GTAC	7 cut(s)	73, 217, 378, 1355, 1415, 1517, 2054
CviQI	GTAC	7 cut(s)	73, 217, 378, 1355, 1415, 1517, 2054
DraI	TTTAAA	2 cut(s)	1218, 2016
DrdI	GACNNNNNNGTC	1 cut(s)	1592
DseDI	GACNNNNNNGTC	1 cut(s)	1592
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	4 cut(s)	144, 699, 1926, 2517
EarI	CTCTTC	4 cut(s)	144, 699, 1926, 2517
Ecl136II	GAGCTC	2 cut(s)	187, 1205
Eco130I	CCWWGG	5 cut(s)	648, 855, 1210, 1285, 1588
Eco147I	AGGCCT	1 cut(s)	854
Eco24I	GRGCYC	3 cut(s)	31, 189, 1207
Eco31I	GGTCTC	1 cut(s)	1387
Eco47I	GGWCC	4 cut(s)	893, 985, 1300, 1832
Eco53kI	GAGCTC	2 cut(s)	187, 1205
Eco57I	CTGAAG	2 cut(s)	2402, 2541
Eco88I	CYCGRG	2 cut(s)	30, 1602
EcoICRI	GAGCTC	2 cut(s)	187, 1205
EcoNI	CCTNNNNNAGG	4 cut(s)	486, 1923, 2243, 2444
EcoO109I	RGGNCCY	1 cut(s)	893
EcoRI	GAATTC	1 cut(s)	1493
EcoRII	CCWGG	6 cut(s)	896, 1099, 1148, 1302, 1425, 1512
EcoT14I	CCWWGG	5 cut(s)	648, 855, 1210, 1285, 1588
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	3 cut(s)	31, 189, 1207
ErhI	CCWWGG	5 cut(s)	648, 855, 1210, 1285, 1588
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 2375, 2407
FauNDI	CATATG	3 cut(s)	937, 1057, 1687
FbaI	TGATCA	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	7 cut(s)	241, 349, 948, 1112, 1656, 2167, 2321
FokI	GGATG	7 cut(s)	218, 1102, 1799, 1820, 2351, 2378, 2563
FriOI	GRGCYC	3 cut(s)	31, 189, 1207
Fsp4HI	GCNGC	7 cut(s)	241, 349, 948, 1112, 1656, 2167, 2321
FspBI	CTAG	6 cut(s)	615, 779, 951, 1716, 1722, 2451
GlaI	GCGC	1 cut(s)	1154
GluI	GCNGC	7 cut(s)	241, 349, 948, 1112, 1656, 2167, 2321
GsaI	CCCAGC	2 cut(s)	1440, 1541
GsuI	CTGGAG	1 cut(s)	296
HapII	CCGG	3 cut(s)	41, 764, 1119
HgaI	GACGC	2 cut(s)	232, 596
HhaI	GCGC	1 cut(s)	1155
Hin6I	GCGC	1 cut(s)	1153
HinP1I	GCGC	1 cut(s)	1153
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	494
HpaII	CCGG	3 cut(s)	41, 764, 1119
HphI	GGTGA	8 cut(s)	94, 130, 158, 425, 444, 458, 822, 1502
Hpy166II	GTNNAC	3 cut(s)	156, 169, 1417
Hpy8I	GTNNAC	3 cut(s)	156, 169, 1417
Hpy99I	CGWCG	3 cut(s)	173, 185, 230
HpyAV	CCTTC	9 cut(s)	73, 1634, 1806, 2023, 2366, 2410, 2419, 2440, 2467
HpyCH4III	ACNGT	4 cut(s)	1226, 1378, 1627, 2053
HpyCH4IV	ACGT	5 cut(s)	75, 158, 1260, 1531, 2056
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1111, 1474, 2476
HpySE526I	ACGT	5 cut(s)	75, 158, 1260, 1531, 2056
HspAI	GCGC	1 cut(s)	1153
Kpn2I	TCCGGA	1 cut(s)	1118
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	415
LguI	GCTCTTC	1 cut(s)	699
LmnI	GCTCC	2 cut(s)	192, 1202
Lsp1109I	GCAGC	4 cut(s)	227, 959, 1098, 1667
LweI	GCATC	3 cut(s)	1322, 1768, 2329
MabI	ACCWGGT	1 cut(s)	1302
MaeI	CTAG	6 cut(s)	615, 779, 951, 1716, 1722, 2451
MaeII	ACGT	5 cut(s)	75, 158, 1260, 1531, 2056
MaeIII	GTNAC	6 cut(s)	726, 793, 931, 1583, 1745, 2135
MfeI	CAATTG	1 cut(s)	1485
MflI	RGATCY	5 cut(s)	34, 49, 862, 1289, 2453
MhlI	GDGCHC	4 cut(s)	31, 189, 1175, 1207
MlyI	GAGTC	6 cut(s)	174, 392, 523, 1602, 2308, 2470
MmeI	TCCRAC	6 cut(s)	420, 459, 1434, 2017, 2300, 2324
Mph1103I	ATGCAT	1 cut(s)	391
MroI	TCCGGA	1 cut(s)	1118
MroNI	GCCGGC	1 cut(s)	40
MroXI	GAANNNNTTC	1 cut(s)	2259
MslI	CAYNNNNRTG	1 cut(s)	1178
MspA1I	CMGCKG	2 cut(s)	1271, 1658
MspI	CCGG	3 cut(s)	41, 764, 1119
MspR9I	CCNGG	7 cut(s)	765, 898, 1101, 1150, 1304, 1427, 1514
MunI	CAATTG	1 cut(s)	1485
Mva1269I	GAATGC	3 cut(s)	389, 2078, 2584
MvaI	CCWGG	6 cut(s)	898, 1101, 1150, 1304, 1427, 1514
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	3 cut(s)	1111, 1474, 2476
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	765
NcoI	CCATGG	1 cut(s)	1588
NdeI	CATATG	3 cut(s)	937, 1057, 1687
NgoMIV	GCCGGC	1 cut(s)	40
NheI	GCTAGC	1 cut(s)	950
NlaIV	GGNNCC	4 cut(s)	305, 895, 1291, 2198
NmuCI	GTSAC	3 cut(s)	1583, 1745, 2135
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	2136, 2563
NspV	TTCGAA	1 cut(s)	1277
PaeR7I	CTCGAG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	2310
PceI	AGGCCT	1 cut(s)	854
PciI	ACATGT	1 cut(s)	2132
PciSI	GCTCTTC	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 231, 240
PctI	GAATGC	3 cut(s)	389, 2078, 2584
PdiI	GCCGGC	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	2259
Pfl23II	CGTACG	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	1309
PkrI	GCNGC	7 cut(s)	242, 350, 949, 1113, 1657, 2168, 2322
PleI	GAGTC	6 cut(s)	173, 392, 523, 1601, 2308, 2469
PpsI	GAGTC	6 cut(s)	173, 392, 523, 1601, 2308, 2469
Ppu21I	YACGTR	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	893
PscI	ACATGT	1 cut(s)	2132
PshBI	ATTAAT	1 cut(s)	959
Psp124BI	GAGCTC	2 cut(s)	189, 1207
Psp1406I	AACGTT	1 cut(s)	1260
Psp5II	RGGWCCY	1 cut(s)	893
Psp6I	CCWGG	6 cut(s)	896, 1099, 1148, 1302, 1425, 1512
PspFI	CCCAGC	2 cut(s)	1436, 1537
PspGI	CCWGG	6 cut(s)	896, 1099, 1148, 1302, 1425, 1512
PspLI	CGTACG	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	305, 895, 1291, 2198
PspPI	GGNCC	9 cut(s)	893, 985, 1103, 1300, 1832, 1858, 2164, 2437, 2542
PspPPI	RGGWCCY	1 cut(s)	893
PstI	CTGCAG	2 cut(s)	1170, 2163
PsuI	RGATCY	5 cut(s)	34, 49, 862, 1289, 2453
PvuII	CAGCTG	2 cut(s)	1271, 1658
RsaI	GTAC	7 cut(s)	74, 218, 379, 1356, 1416, 1518, 2055
RsaNI	GTAC	7 cut(s)	73, 217, 378, 1355, 1415, 1517, 2054
RseI	CAYNNNNRTG	1 cut(s)	1178
SacI	GAGCTC	2 cut(s)	189, 1207
SalI	GTCGAC	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	699
SatI	GCNGC	7 cut(s)	241, 349, 948, 1112, 1656, 2167, 2321
Sau96I	GGNCC	9 cut(s)	893, 985, 1103, 1300, 1832, 1858, 2164, 2437, 2542
SbfI	CCTGCAGG	1 cut(s)	2163
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	6 cut(s)	174, 392, 523, 1602, 2308, 2470
ScrFI	CCNGG	7 cut(s)	765, 898, 1101, 1150, 1304, 1427, 1514
SdaI	CCTGCAGG	1 cut(s)	2163
SduI	GDGCHC	4 cut(s)	31, 189, 1175, 1207
SexAI	ACCWGGT	1 cut(s)	1302
SfaNI	GCATC	3 cut(s)	1322, 1768, 2329
SfcI	CTRYAG	4 cut(s)	876, 1166, 2159, 2304
Sfr274I	CTCGAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	1277
SinI	GGWCC	4 cut(s)	893, 985, 1300, 1832
SlaI	CTCGAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	1178
SmlI	CTYRAG	3 cut(s)	30, 457, 1963
SmoI	CTYRAG	3 cut(s)	30, 457, 1963
Sse8387I	CCTGCAGG	1 cut(s)	2163
SseBI	AGGCCT	1 cut(s)	854
SsiI	CCGC	4 cut(s)	348, 402, 2167, 2320
SspI	AATATT	2 cut(s)	1361, 1767
SspMI	CTAG	6 cut(s)	615, 779, 951, 1716, 1722, 2451
SstI	GAGCTC	2 cut(s)	189, 1207
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	7 cut(s)	763, 896, 1099, 1148, 1302, 1425, 1512
StyI	CCWWGG	5 cut(s)	648, 855, 1210, 1285, 1588
TaaI	ACNGT	4 cut(s)	1226, 1378, 1627, 2053
TaiI	ACGT	5 cut(s)	78, 161, 1263, 1534, 2059
TaqI	TCGA	6 cut(s)	31, 163, 168, 270, 291, 1277
TatI	WGTACW	3 cut(s)	216, 377, 1354
TauI	GCSGC	3 cut(s)	351, 2169, 2323
TscAI	CASTG	2 cut(s)	1381, 1588
TseFI	GTSAC	3 cut(s)	1583, 1745, 2135
TseI	GCWGC	4 cut(s)	240, 947, 1111, 1655
Tsp45I	GTSAC	3 cut(s)	1583, 1745, 2135
TspGWI	ACGGA	2 cut(s)	60, 1091
TspRI	CASTG	2 cut(s)	1381, 1588
Van91I	CCANNNNNTGG	1 cut(s)	1309
VpaK11BI	GGWCC	4 cut(s)	893, 985, 1300, 1832
VspI	ATTAAT	1 cut(s)	959
XagI	CCTNNNNNAGG	4 cut(s)	486, 1923, 2243, 2444
XapI	RAATTY	9 cut(s)	248, 902, 1159, 1493, 1815, 1968, 2071, 2111, 2206
XbaI	TCTAGA	1 cut(s)	778
XceI	RCATGY	2 cut(s)	2136, 2563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2090
XhoI	CTCGAG	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	2259
XspI	CTAG	6 cut(s)	615, 779, 951, 1716, 1722, 2451
ZrmI	AGTACT	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.