Rmu_co8475531.1_g000001

DUF4206

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8475531.1
Physical Location & Seq
Forward (+)
341 .. 2068
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8475531.1_g000001.1.cds

Sequence Viewer

Length: 1728 bp
atggagagagcagagactacgactatcgagtccgatccgttcgatcggaaatcggacggcgatgcgtcaacggcgtcgcctccgtcgaggtactcgtcgttcggcgagtccgagtacgagcgctatggcagcgccaactcggtcatgggcacgccgagcatgtgtagcacagtcacggtttttaatgattttccggaggctgatttcgcgtcggtcaggagtttagggtttggggaggaaggcggtggtgtcgagggtttcagtttgggagggaggattgataggaatagtaatcgagaggatcggagactttcgagtagtggtaggattgaggaagatggtattagagggcgtccgggtactaagtatgggtctagtgggttggagttgtatgggaatgaggatgatgatattggagttggtggtgatgcaaatgagttgatgtcttggaagcttgacaagagtggaccgccgggtttaatggagggttcggagttgaagtgtggttcagatgatagtgatgaggagaatgaggaaggcaggggagtggagagagggaaagattgtgtgttggatcgagacgattcaaaagaggttggaactggttctcagcttggaccggaagttgagcagagatgttttgatggaggagagatggagagggaagaaggagcgtcgtctagaaatgagtattccgaggatgaggggtccatgtacaactacggtacacatgatgagcctaagagtgactttaatcatcagaggagtgtagagtactactatgagcaatcaaaaccaaagaatgaaaatgagaatccatttcttatgaattcatctgtagcctttggttctgatgattgggatgattttgtgcaagagagtgaacggagtaatatagcttctttcactaggagtgcattccaggagcagatagaactgaatgtggaaactgaaaagaaagttttgaattctggttctgtcacttcacatcagggtacatgtcaaactgagcaagggaaggatgtgactgacatgcccagaggtagcgaacatgttgaagctgataacaatctggcagaaagtgttaaacgttccagagaaccagctaagtctccaaattttgttgaaccagagggagtagaagatgtgaaggacattcctgtggccaattatcaggtgcaagctattgaggacttgactgaatttaccaaaagttcttttaccaccccaactggttttcaaaatgttcaagaaccagagcaggaagattcgaaagacattgtattgaccaagaataaagatccaggccctgacaaatcagcaaattatcctcaagcttcgttgtctggcaatttctccaaaatacagctcgattcagaagccaaaaaagctcccgaggaaaagggtttcaacattgtggttgatgacatatctgatatgcatacgtgtaataatactgaggtcactgagattgatgatggtcaagatttaggaaataaaaatttggggaagataaaagttaaactggaccccctttctgagatatcaaccgatcaactgagtatccattcaactggacctcctggaagtatgaaggcagaattctttgaagaccttgagccaaatacgcgaaccttaacttttgaaaataatatgacgaaaaatgctcctgtttcagaagatatttttgaagaatatcctatgccacttaaggttagtcgtgcttag

Protein Analysis

575

Amino Acids

63.35

Weight (kDa)

4.36

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010875)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccII CGCG 2 cut(s) 209, 1630
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 2 cut(s) 243, 470
AclI AACGTT 1 cut(s) 1090
AclWI GGATC 4 cut(s) 29, 309, 582, 1295
AcoI YGGCCR 1 cut(s) 1164
AcsI RAATTY 6 cut(s) 829, 967, 1117, 1202, 1501, 1601
AcyI GRCGYC 2 cut(s) 74, 352
AfaI GTAC 7 cut(s) 92, 116, 361, 716, 727, 776, 997
AfeI AGCGCT 1 cut(s) 122
AflII CTTAAG 1 cut(s) 1709
AflIII ACRYGT 3 cut(s) 998, 1051, 1445
AjnI CCWGG 3 cut(s) 921, 1303, 1582
AluBI AGCT 9 cut(s) 454, 613, 899, 1061, 1106, 1184, 1337, 1369, 1391
AluI AGCT 9 cut(s) 454, 613, 899, 1061, 1106, 1184, 1337, 1369, 1391
Alw26I GTCTC 4 cut(s) 8, 301, 573, 1116
AlwI GGATC 4 cut(s) 29, 309, 582, 1295
AlwNI CAGNNNCTG 1 cut(s) 1310
Ama87I CYCGRG 1 cut(s) 1394
Aor13HI TCCGGA 1 cut(s) 193
Aor51HI AGCGCT 1 cut(s) 122
AoxI GGCC 2 cut(s) 1164, 1306
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 6 cut(s) 829, 967, 1117, 1202, 1501, 1601
Asp700I GAANNNNTTC 1 cut(s) 604
AspLEI GCGC 2 cut(s) 123, 134
AspS9I GGNCC 6 cut(s) 467, 617, 708, 1307, 1528, 1577
AsuC2I CCSGG 2 cut(s) 357, 474
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 1 cut(s) 1271
AvaI CYCGRG 1 cut(s) 1394
AvaII GGWCC 5 cut(s) 467, 617, 708, 1528, 1577
BaeGI GKGCMC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 1166
BarI GAAGNNNNNNTAC 2 cut(s) 883, 915
BbsI GAAGAC 1 cut(s) 1617
BbvI GCAGC 1 cut(s) 141
BccI CCATC 4 cut(s) 332, 638, 649, 1472
BceAI ACGGC 2 cut(s) 73, 87
BciT130I CCWGG 3 cut(s) 923, 1305, 1584
BciVI GTATCC 1 cut(s) 1574
BcnI CCSGG 2 cut(s) 357, 474
BcoDI GTCTC 4 cut(s) 8, 301, 573, 1116
BfaI CTAG 3 cut(s) 375, 681, 909
BfmI CTRYAG 1 cut(s) 837
BfoI RGCGCY 2 cut(s) 124, 135
BfrI CTTAAG 1 cut(s) 1709
BfuI GTATCC 1 cut(s) 1574
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 5 cut(s) 357, 474, 923, 1305, 1584
Bme18I GGWCC 5 cut(s) 467, 617, 708, 1528, 1577
BmeT110I CYCGRG 1 cut(s) 1394
BmgT120I GGNCC 6 cut(s) 467, 617, 708, 1307, 1528, 1577
BmiI GGNNCC 2 cut(s) 709, 1530
BmrFI CCNGG 5 cut(s) 357, 474, 923, 1305, 1584
BmsI GCATC 2 cut(s) 52, 418
BpiI GAAGAC 1 cut(s) 1617
Bpu14I TTCGAA 1 cut(s) 1271
BpuEI CTTGAG 2 cut(s) 1317, 1637
BpuMI CCSGG 2 cut(s) 357, 474
BsaAI YACGTR 1 cut(s) 1446
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 2 cut(s) 74, 352
BsaJI CCNNGG 2 cut(s) 696, 1395
BsaWI WCCGGW 2 cut(s) 193, 619
BsaXI ACNNNNNCTCC 4 cut(s) 485, 515, 1564, 1594
Bse1I ACTGG 4 cut(s) 607, 1237, 1530, 1579
Bse8I GATNNNNATC 1 cut(s) 1068
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 3 cut(s) 923, 1305, 1584
BseDI CCNNGG 2 cut(s) 696, 1395
BseGI GGATG 4 cut(s) 409, 706, 868, 1027
BseJI GATNNNNATC 1 cut(s) 1068
BseMII CTCAG 6 cut(s) 623, 999, 1449, 1458, 1530, 1550
BseNI ACTGG 4 cut(s) 607, 1237, 1530, 1579
BseRI GAGGAG 3 cut(s) 539, 663, 778
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 1 cut(s) 141
Bsh1236I CGCG 2 cut(s) 209, 1630
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 2 cut(s) 1166, 1308
BsiEI CGRYCG 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 1394
BsiSI CCGG 4 cut(s) 194, 356, 473, 620
BsmAI GTCTC 4 cut(s) 8, 301, 573, 1116
BsmBI CGTCTC 1 cut(s) 573
BsmI GAATGC 1 cut(s) 917
BsnI GGCC 2 cut(s) 1166, 1308
BsoBI CYCGRG 1 cut(s) 1394
Bsp119I TTCGAA 1 cut(s) 1271
Bsp1286I GDGCHC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 6 cut(s) 34, 43, 301, 574, 1300, 1552
BspACI CCGC 2 cut(s) 243, 470
BspANI GGCC 2 cut(s) 1166, 1308
BspCNI CTCAG 6 cut(s) 622, 1000, 1450, 1459, 1531, 1551
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 2 cut(s) 209, 1630
BspLI GGNNCC 2 cut(s) 709, 1530
BspPI GGATC 4 cut(s) 29, 309, 582, 1295
BspT104I TTCGAA 1 cut(s) 1271
BspTI CTTAAG 1 cut(s) 1709
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 4 cut(s) 607, 1237, 1530, 1579
BssECI CCNNGG 2 cut(s) 696, 1395
BssMI GATC 6 cut(s) 34, 43, 301, 574, 1300, 1552
BssNI GRCGYC 2 cut(s) 74, 352
Bst2UI CCWGG 3 cut(s) 923, 1305, 1584
Bst4CI ACNGT 3 cut(s) 172, 178, 725
BstACI GRCGYC 2 cut(s) 74, 352
BstAFI CTTAAG 1 cut(s) 1709
BstAUI TGTACA 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 1446
BstBI TTCGAA 1 cut(s) 1271
BstC8I GCNNGC 2 cut(s) 152, 1182
BstF5I GGATG 4 cut(s) 409, 706, 868, 1027
BstFNI CGCG 2 cut(s) 209, 1630
BstH2I RGCGCY 2 cut(s) 124, 135
BstHHI GCGC 2 cut(s) 123, 134
BstKTI GATC 6 cut(s) 37, 46, 304, 577, 1303, 1555
BstMAI GTCTC 4 cut(s) 8, 301, 573, 1116
BstMBI GATC 6 cut(s) 34, 43, 301, 574, 1300, 1552
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 7 cut(s) 71, 129, 156, 165, 206, 1388, 1627
BstNI CCWGG 3 cut(s) 923, 1305, 1584
BstNSI RCATGY 4 cut(s) 163, 1002, 1036, 1055
BstSCI CCNGG 5 cut(s) 355, 472, 921, 1303, 1582
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 2 cut(s) 209, 1630
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 1617
BstX2I RGATCY 1 cut(s) 1300
BstXI CCANNNNNNTGG 1 cut(s) 1574
BstYI RGATCY 1 cut(s) 1300
BsuI GTATCC 1 cut(s) 1574
BsuRI GGCC 2 cut(s) 1166, 1308
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 4 cut(s) 409, 706, 868, 1027
BtsIMutI CAGTG 1 cut(s) 1464
Cac8I GCNNGC 2 cut(s) 152, 1182
CaiI CAGNNNCTG 1 cut(s) 1310
CfoI GCGC 2 cut(s) 123, 134
Cfr13I GGNCC 6 cut(s) 467, 617, 708, 1307, 1528, 1577
CseI GACGC 5 cut(s) 54, 63, 198, 341, 663
Csp6I GTAC 7 cut(s) 91, 115, 360, 715, 726, 775, 996
CviAII CATG 7 cut(s) 145, 160, 712, 731, 999, 1033, 1052
CviQI GTAC 7 cut(s) 91, 115, 360, 715, 726, 775, 996
DpnI GATC 6 cut(s) 36, 45, 303, 576, 1302, 1554
DpnII GATC 6 cut(s) 34, 43, 301, 574, 1300, 1552
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 1164
Eco32I GATATC 1 cut(s) 1545
Eco47I GGWCC 5 cut(s) 467, 617, 708, 1528, 1577
Eco47III AGCGCT 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 1394
EcoO109I RGGNCCY 1 cut(s) 1307
EcoRI GAATTC 3 cut(s) 829, 967, 1601
EcoRII CCWGG 3 cut(s) 921, 1303, 1582
EcoRV GATATC 1 cut(s) 1545
EcoT22I ATGCAT 1 cut(s) 1443
Esp3I CGTCTC 1 cut(s) 573
FaeI CATG 7 cut(s) 148, 163, 715, 734, 1002, 1036, 1055
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FatI CATG 7 cut(s) 144, 159, 711, 730, 998, 1032, 1051
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 4 cut(s) 416, 713, 875, 1034
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 3 cut(s) 375, 681, 909
GlaI GCGC 2 cut(s) 122, 133
GluI GCNGC 1 cut(s) 130
HaeII RGCGCY 2 cut(s) 124, 135
HaeIII GGCC 2 cut(s) 1166, 1308
HapII CCGG 4 cut(s) 194, 356, 473, 620
HgaI GACGC 5 cut(s) 54, 63, 198, 341, 663
HhaI GCGC 2 cut(s) 123, 134
Hin1I GRCGYC 2 cut(s) 74, 352
Hin1II CATG 7 cut(s) 148, 163, 715, 734, 1002, 1036, 1055
Hin6I GCGC 2 cut(s) 121, 132
HinP1I GCGC 2 cut(s) 121, 132
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 2 cut(s) 452, 1335
HinfI GANTC 6 cut(s) 29, 107, 584, 814, 1268, 1373
HpaII CCGG 4 cut(s) 194, 356, 473, 620
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 4 cut(s) 69, 467, 728, 884
Hpy188III TCNNGA 9 cut(s) 194, 217, 296, 578, 681, 1095, 1250, 1394, 1484
Hpy8I GTNNAC 4 cut(s) 69, 467, 728, 884
Hpy99I CGWCG 5 cut(s) 79, 88, 100, 214, 679
HpyAV CCTTC 6 cut(s) 233, 530, 662, 1012, 1144, 1588
HpyCH4III ACNGT 3 cut(s) 172, 178, 725
HpyCH4IV ACGT 2 cut(s) 1090, 1445
HpyCH4V TGCA 5 cut(s) 431, 874, 917, 1180, 1441
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 129, 156, 165, 206, 1388, 1627
HpySE526I ACGT 2 cut(s) 1090, 1445
Hsp92I GRCGYC 2 cut(s) 74, 352
Hsp92II CATG 7 cut(s) 148, 163, 715, 734, 1002, 1036, 1055
HspAI GCGC 2 cut(s) 121, 132
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 6 cut(s) 34, 43, 301, 574, 1300, 1552
LmnI GCTCC 4 cut(s) 671, 925, 1396, 1672
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 2 cut(s) 52, 418
MaeI CTAG 3 cut(s) 375, 681, 909
MaeII ACGT 2 cut(s) 1090, 1445
MaeIII GTNAC 5 cut(s) 172, 746, 979, 1024, 1462
MalI GATC 6 cut(s) 36, 45, 303, 576, 1302, 1554
MboI GATC 6 cut(s) 34, 43, 301, 574, 1300, 1552
MboII GAAGA 8 cut(s) 347, 677, 1154, 1277, 1522, 1622, 1691, 1703
MflI RGATCY 1 cut(s) 1300
MhlI GDGCHC 1 cut(s) 152
MlsI TGGCCA 1 cut(s) 1166
MluCI AATT 9 cut(s) 829, 967, 1117, 1168, 1202, 1324, 1351, 1501, 1601
MluNI TGGCCA 1 cut(s) 1166
MlyI GAGTC 2 cut(s) 38, 116
MmeI TCCRAC 3 cut(s) 363, 552, 577
Mox20I TGGCCA 1 cut(s) 1166
Mph1103I ATGCAT 1 cut(s) 1443
MroI TCCGGA 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 604
MscI TGGCCA 1 cut(s) 1166
MseI TTAA 7 cut(s) 183, 479, 753, 1086, 1521, 1637, 1710
MslI CAYNNNNRTG 1 cut(s) 1160
Msp20I TGGCCA 1 cut(s) 1166
MspCI CTTAAG 1 cut(s) 1709
MspI CCGG 4 cut(s) 194, 356, 473, 620
MspR9I CCNGG 5 cut(s) 357, 474, 923, 1305, 1584
Mva1269I GAATGC 1 cut(s) 917
MvaI CCWGG 3 cut(s) 923, 1305, 1584
MvnI CGCG 2 cut(s) 209, 1630
MwoI GCNNNNNNNGC 7 cut(s) 71, 129, 156, 165, 206, 1388, 1627
NciI CCSGG 2 cut(s) 357, 474
NdeII GATC 6 cut(s) 34, 43, 301, 574, 1300, 1552
NlaIII CATG 7 cut(s) 148, 163, 715, 734, 1002, 1036, 1055
NlaIV GGNNCC 2 cut(s) 709, 1530
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 5 cut(s) 172, 746, 979, 1024, 1462
NsiI ATGCAT 1 cut(s) 1443
NspI RCATGY 4 cut(s) 163, 1002, 1036, 1055
NspV TTCGAA 1 cut(s) 1271
PciI ACATGT 2 cut(s) 998, 1051
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 92, 108
PctI GAATGC 1 cut(s) 917
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 4 cut(s) 584, 814, 1268, 1373
PfoI TCCNGGA 2 cut(s) 921, 1582
PkrI GCNGC 1 cut(s) 131
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 2 cut(s) 37, 115
PpsI GAGTC 2 cut(s) 37, 115
Ppu21I YACGTR 1 cut(s) 1446
PscI ACATGT 2 cut(s) 998, 1051
Psp1406I AACGTT 1 cut(s) 1090
Psp6I CCWGG 3 cut(s) 921, 1303, 1582
PspGI CCWGG 3 cut(s) 921, 1303, 1582
PspN4I GGNNCC 2 cut(s) 709, 1530
PspPI GGNCC 6 cut(s) 467, 617, 708, 1307, 1528, 1577
PsrI GAACNNNNNNTAC 2 cut(s) 83, 115
PstNI CAGNNNCTG 1 cut(s) 1310
PsuI RGATCY 1 cut(s) 1300
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 7 cut(s) 92, 116, 361, 716, 727, 776, 997
RsaNI GTAC 7 cut(s) 91, 115, 360, 715, 726, 775, 996
RseI CAYNNNNRTG 1 cut(s) 1160
SaqAI TTAA 7 cut(s) 183, 479, 753, 1086, 1521, 1637, 1710
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 6 cut(s) 34, 43, 301, 574, 1300, 1552
Sau96I GGNCC 6 cut(s) 467, 617, 708, 1307, 1528, 1577
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 2 cut(s) 38, 116
ScrFI CCNGG 5 cut(s) 357, 474, 923, 1305, 1584
SduI GDGCHC 1 cut(s) 152
SfaNI GCATC 2 cut(s) 52, 418
SfcI CTRYAG 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 1271
SinI GGWCC 5 cut(s) 467, 617, 708, 1528, 1577
SmiMI CAYNNNNRTG 1 cut(s) 1160
SmlI CTYRAG 3 cut(s) 1332, 1616, 1709
SmoI CTYRAG 3 cut(s) 1332, 1616, 1709
Sse9I AATT 9 cut(s) 829, 967, 1117, 1168, 1202, 1324, 1351, 1501, 1601
SsiI CCGC 2 cut(s) 243, 470
SspMI CTAG 3 cut(s) 375, 681, 909
StyD4I CCNGG 5 cut(s) 355, 472, 921, 1303, 1582
TaaI ACNGT 3 cut(s) 172, 178, 725
TaiI ACGT 2 cut(s) 1093, 1448
TaqI TCGA 9 cut(s) 27, 42, 86, 252, 295, 314, 577, 1271, 1371
TaqII GACCGA 2 cut(s) 130, 202
TasI AATT 9 cut(s) 829, 967, 1117, 1168, 1202, 1324, 1351, 1501, 1601
TatI WGTACW 2 cut(s) 714, 774
TfiI GAWTC 4 cut(s) 584, 814, 1268, 1373
Tru1I TTAA 7 cut(s) 183, 479, 753, 1086, 1521, 1637, 1710
Tru9I TTAA 7 cut(s) 183, 479, 753, 1086, 1521, 1637, 1710
TscAI CASTG 1 cut(s) 1471
TseFI GTSAC 5 cut(s) 172, 746, 979, 1024, 1462
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 5 cut(s) 172, 746, 979, 1024, 1462
TspDTI ATGAA 4 cut(s) 819, 822, 842, 1607
TspGWI ACGGA 3 cut(s) 27, 72, 901
TspRI CASTG 1 cut(s) 1471
Vha464I CTTAAG 1 cut(s) 1709
VpaK11BI GGWCC 5 cut(s) 467, 617, 708, 1528, 1577
XapI RAATTY 6 cut(s) 829, 967, 1117, 1202, 1501, 1601
XbaI TCTAGA 1 cut(s) 680
XceI RCATGY 4 cut(s) 163, 1002, 1036, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 3 cut(s) 375, 681, 909
ZrmI AGTACT 1 cut(s) 776
Zsp2I ATGCAT 1 cut(s) 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.