Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010875

Physical Location & Seq

Genomic Coordinates Forward (+)

11614092 .. 11620698

Gene Structure 6607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG137200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3087 bp

ATGGAGAGAGCAGAGACTACGACTATCGAGTCCGATCCGTTCGATCGGAAATCGGACGGCGATGCGTCAACGGCGTCGCCTCCGTCGAGGTACTCGTCGTTCGGCGAGTCCGAGTACGAGCGCTATGGCAGCGCCAACTCGGTCATGGGCACGCCGAGCATGTGTAGCACAGTCACGGTTTTTAATGATTTTCCGGAGGCTGATTTCGCGTCGGTCAGGAGTTTAGGGTTTGGGGAGGAAGGCGGTGGTGTCGAGGGTTTCAGTTTGGGAGGGAGGATTGATAGGAATAGTAATCGAGAGGATCGGAGACTTTCGAGTAGTGGTAGGATTGAGGAAGATGGTATTAGAGGGCGTCCGGGTACTAAGTATGGGTCTAGTGGGTTGGAGTTGTATGGGAATGAGGATGATGATATTGGAGTTGGTGGTGATGCAAATGAGTTGATGTCTTGGAAGCTTGACAAGAGTGGACCGCCGGGTTTAATGGAGGGTTCGGAGTTGAAGTGTGGTTCAGATGATAGTGATGAGGAGAATGAGGAAGGCAGGGGAGTGGAGAGAGGGAAAGATTGTGTGTTGGATCGAGACGATTCAAAAGAGGTTGGAACTGGTTCTCAGCTTGGACCGGAAGTTGAGCAGAGATGTTTTGATGGAGGAGAGATGGATAGGGAAGAAGGAGCGTCGTCTAGAAATGAGTATTCCGAGGATGAGGGGTCCATGTACAACTACGGTACACATGATGAGCCTAAGAGTGACTTTAATCATCAGAGGAGTGTAGAGTACTACTATGAGCAATCAAAACCAAAGAATGAAAATGAGAATCCATTTCTTATGAATTCATCTGTAGCCTTTGGTTCTGATGATTGGGATGATTTTGTGCAAGAGAGTGAACGGAGTAATATAGCTTCTTTCACTAGGAGTGCATTCCAGGAGCAGATAGAACTGAATGTGGAAACTGAAAAGAAAGTTTTGAATTCTGGTTCTGTCACTTCACATCAGGGTACATGTCAAACTGAGCAAGGGAAGGATGTGACTGACATGCCCAGAGGTAGCGAACATGTTGAAGCTGATAACAATCTGGCAGAAAGTGTTAAACGTTCCAGAGAACCAGCTAAGTCTCCAAATTTTGTTGAACCAGAGGGAGTAGAAGATGTGAAGGACATTCCTGTGGCCAATTATCAGGTGCAAGCTATTGAGGACTTGACTGAATTTACCAAAAGTTCTTTTACCACCCCAACTGGTTTTCAAAATGTTCAAGAACCAGAGCAGGAAGATTCGAAAGACATTGTATTGACCAAGAATAAAGATCCAGGCCCTGACAAATCAGCAAATTATCCTCAAGCTTCGTTGTCTGGCAATTTCTCCAAAATACAGCTCGATTCAGAAGCCAAAAAAGCTCCTGAGGAAAAGGGTTTCAACATTGTGGTTGACGACATATCTGATATGCATACGTGTAATAATACTGAGGTCACTGAGATTGATGATGGTCAAGATTTAGGAAATAAAAATTTGGGGAAGATAAAAGTTAAACTGGACCCCCTTTCTGAGATATCAACCGATCAACTGAGTATCCATTCAACTGGACCTCCTGGAAGTATGAAGGCAGAATTCTTTGAAGACCTTGAGCCAAATACGCGAACCTTAACTTTTGAAAATAATATGACGAAAAATGCTCCTGTTTCAGAAGATATTTTTGAAGAATATCCTATGCCACTTAAGACAGATAATTTTGAGCTAAATGAATTCTATGATGAGTTTGTTAATGACATGGAAGAAATATTGCTAGACTCTGCGGAGTCCCCCGGAGCAAGGTTCAGTCATGGTAACAGGAACTTACAATCACAACTATCTTTACCATTAAGAGATGGTGGATCGACTGCTTCTACTTCTGGTACAGATGATGCTTACCTGTTTAATCAGCATTCCCTCAGAATTGATGGGGTCGAAGTGGTGGGTGCAAAGCAGAAGAAGGGAGATGTCACCTTTAGTGAAAGACTGGTAGGAGTGAAGGAATACACTGTTTATAGAATGAGAGTGTGGAGTGGCAAGGATCAATGGGAGGTTGAACGTCGGTATCGTGATTTCTTTACACTCTACCGTCGGTTGAAAACATTGTTTGCTGACCATGGATGGAATCTACCTTCTCCCTGGTCTGCTGTAGAAAAGGAATCCAGAAAGATTTTTGGAAATGCATCTCCTGATGTTATTGCACAGAGAAGCGTTCTCATTCAAGAGTGTCTACAGTCCATTCTCCATTATAGATTCTTTTCGGGTCCTCCAAGTGCATTGATTTGGTTTCTGTCTCCTCAAGATTCATTTCCTACCTCCATGTCCTCAAATACACCTGATCCTATTAATAGAAGGGCAGACACAGAAAATGTGTCCACTTTAGGAAAGACGATATCACTTATTGTTGAAGTTCGACCATACAAATCTTTGAAGCAGATTCTAGAAGCACAACATTATATGTGTGCTGGATGCCACAAACATTTTGACGATGGAAAGACCCTGATACTGGATTTTGCACAGACATTTGGATGGGGCAAGCCTCGATTGTGTGAATATACAGGTCAATTATTTTGCTCTTCGTGCCATACGAATGAGACTGCGGTCATACCAGCAAGAGTATTGCATCACTGGGATTTTACTCAATATTCTGTGTCACAGTTAGCTAAATCTTATCTCGATTCTATACATGACCAGCCAATGCTATGTGTCAGTGCAGTTAATCCATTCCTTTTCTCAAAGGTCCCAGCCTTGCTTCATGTTATGGGTGTTAGGAAGAAAATAGGCACCATGCTTCCATATGTTCGTTGCCCTTTCCGCAGGACAATCAACAAAGGTCTTGGGTCTAGAAAATATCTTCTCGAAGGCAATGATTTTTTTGCACTGAGAGACCTCATTGATCTTTCAAAAGGAGCCTTTGCAGTGCTGCCTGTGATGGTGGAAACCGTGTTGAGTAAAATTTGTGGGCATATCACAGAGCAGTGTCTCATATGCTGTGATGTGGGAGTTCCCTGTGGTGCACGACAAGCATGCAATGACCCTTCATCTCTCATTTTCCCTTTCCAGAAACCATTGGCAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0009987 GO:0012505 GO:0030154 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045445 GO:0048856 GO:0048869 GO:0061061

KEGG Pathways

Metabolic & Signaling

ko04140 map04140

Pfam Domains

Protein Families

PX zf-RING_9

Protein Analysis

1028

Amino Acids

114.52

Weight (kDa)

4.77

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	678 - 766	2.4e-06	PX domain
RH_dom	PF13901	849 - 1023	4.2e-44	Rubicon Homology Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48195
fragaria_vesca	FvH4_5g05470 FvH4_5g05470 FvH4_5g05470
malus_domestica	MD06G1172500.v1.1 MD14G1178400.v1.1
prunus_persica	Prupe.5G171800_v2.0.a1 Prupe.5G171800_v2.0.a1
pyrus_communis	pycom06g15360 pycom14g14870
rosa_chinensis	RchiOBHm_Chr7g0193371
rosa_laevigata	RLG00000004275
rosa_multiflora	Rmu_co8475531.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262170
rosa_rugosa	Rorug07G0009200
rosa_samantha	Rh7AG135500 Rh7BG135800 Rh7CG139200 Rh7DG137200
rosa_wichuraiana	Rw7G011550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	2786
AccI	GTMKAC	1 cut(s)	2233
AccII	CGCG	2 cut(s)	209, 1630
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	5 cut(s)	243, 470, 1787, 2603, 2818
AclI	AACGTT	1 cut(s)	1090
AclWI	GGATC	7 cut(s)	29, 309, 582, 1295, 1873, 2052, 2336
AcoI	YGGCCR	1 cut(s)	1164
AcsI	RAATTY	8 cut(s)	829, 967, 1117, 1202, 1501, 1601, 1736, 2958
AcyI	GRCGYC	2 cut(s)	74, 352
AfaI	GTAC	8 cut(s)	92, 116, 361, 716, 727, 776, 997, 1888
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	1803, 2509, 3077
AflII	CTTAAG	1 cut(s)	1709
AflIII	ACRYGT	3 cut(s)	998, 1051, 1445
AjnI	CCWGG	4 cut(s)	921, 1303, 1582, 2141
Alw21I	GWGCWC	1 cut(s)	3022
Alw26I	GTCTC	8 cut(s)	8, 301, 573, 1116, 2301, 2591, 2883, 2990
Alw44I	GTGCAC	1 cut(s)	3018
AlwI	GGATC	7 cut(s)	29, 309, 582, 1295, 1873, 2052, 2336
AlwNI	CAGNNNCTG	1 cut(s)	1310
Aor13HI	TCCGGA	1 cut(s)	193
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	2 cut(s)	1164, 1306
ApaLI	GTGCAC	1 cut(s)	3018
ApeKI	GCWGC	2 cut(s)	129, 2926
ApoI	RAATTY	8 cut(s)	829, 967, 1117, 1202, 1501, 1601, 1736, 2958
AseI	ATTAAT	1 cut(s)	2349
Asp700I	GAANNNNTTC	1 cut(s)	604
AspLEI	GCGC	2 cut(s)	123, 134
AspS9I	GGNCC	8 cut(s)	467, 617, 708, 1307, 1528, 1577, 2267, 2743
AsuC2I	CCSGG	3 cut(s)	357, 474, 1797
AsuHPI	GGTGA	2 cut(s)	437, 1966
AsuII	TTCGAA	1 cut(s)	1271
AvaII	GGWCC	7 cut(s)	467, 617, 708, 1528, 1577, 2267, 2743
AxyI	CCTNAGG	1 cut(s)	1395
BaeGI	GKGCMC	2 cut(s)	152, 3022
BaeI	ACNNNNGTAYC	2 cut(s)	2051, 2084
BalI	TGGCCA	1 cut(s)	1166
BanI	GGYRCC	1 cut(s)	2786
BarI	GAAGNNNNNNTAC	2 cut(s)	883, 915
BbsI	GAAGAC	1 cut(s)	1617
Bbv12I	GWGCWC	1 cut(s)	3022
BbvI	GCAGC	2 cut(s)	141, 2913
BceAI	ACGGC	2 cut(s)	73, 87
BcgI	CGANNNNNNTGC	2 cut(s)	3012, 3046
BciT130I	CCWGG	4 cut(s)	923, 1305, 1584, 2143
BciVI	GTATCC	1 cut(s)	1574
BcnI	CCSGG	3 cut(s)	357, 474, 1797
BcoDI	GTCTC	8 cut(s)	8, 301, 573, 1116, 2301, 2591, 2883, 2990
BfaI	CTAG	6 cut(s)	375, 681, 909, 1778, 2444, 2847
BfmI	CTRYAG	3 cut(s)	837, 2151, 2234
BfoI	RGCGCY	2 cut(s)	124, 135
BfrI	CTTAAG	1 cut(s)	1709
BfuI	GTATCC	1 cut(s)	1574
BisI	GCNGC	2 cut(s)	130, 2927
BlsI	GCNGC	2 cut(s)	131, 2928
BmcAI	AGTACT	1 cut(s)	776
Bme1390I	CCNGG	7 cut(s)	357, 474, 923, 1305, 1584, 1797, 2143
Bme18I	GGWCC	7 cut(s)	467, 617, 708, 1528, 1577, 2267, 2743
BmgT120I	GGNCC	8 cut(s)	467, 617, 708, 1307, 1528, 1577, 2267, 2743
BmiI	GGNNCC	6 cut(s)	709, 1530, 2268, 2745, 2788, 2914
BmrFI	CCNGG	7 cut(s)	357, 474, 923, 1305, 1584, 1797, 2143
BmrI	ACTGGG	1 cut(s)	2641
BmsI	GCATC	6 cut(s)	52, 418, 1885, 2195, 2462, 2635
BmuI	ACTGGG	1 cut(s)	2641
BoxI	GACNNNNGTC	1 cut(s)	2603
BpiI	GAAGAC	1 cut(s)	1617
Bpu14I	TTCGAA	1 cut(s)	1271
BpuEI	CTTGAG	3 cut(s)	1317, 1637, 2286
BpuMI	CCSGG	3 cut(s)	357, 474, 1797
BsaAI	YACGTR	1 cut(s)	1446
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaHI	GRCGYC	2 cut(s)	74, 352
BsaI	GGTCTC	1 cut(s)	2883
BsaJI	CCNNGG	4 cut(s)	696, 1795, 2119, 2141
BsaWI	WCCGGW	2 cut(s)	193, 619
BsaXI	ACNNNNNCTCC	4 cut(s)	485, 515, 1564, 1594
Bsc4I	CCNNNNNNNGG	3 cut(s)	1803, 2509, 3077
Bse1I	ACTGG	7 cut(s)	607, 1237, 1530, 1579, 1995, 2514, 2636
Bse21I	CCTNAGG	1 cut(s)	1395
Bse3DI	GCAATG	2 cut(s)	2875, 3040
Bse8I	GATNNNNATC	1 cut(s)	1068
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	4 cut(s)	923, 1305, 1584, 2143
BseDI	CCNNGG	4 cut(s)	696, 1795, 2119, 2141
BseGI	GGATG	7 cut(s)	409, 706, 868, 1027, 2129, 2477, 2537
BseJI	GATNNNNATC	1 cut(s)	1068
BseLI	CCNNNNNNNGG	3 cut(s)	1803, 2509, 3077
BseMI	GCAATG	2 cut(s)	2875, 3040
BseMII	CTCAG	9 cut(s)	623, 999, 1386, 1449, 1458, 1530, 1550, 1936, 2876
BseNI	ACTGG	7 cut(s)	607, 1237, 1530, 1579, 1995, 2514, 2636
BseRI	GAGGAG	4 cut(s)	539, 663, 778, 2289
BseSI	GKGCMC	2 cut(s)	152, 3022
BseXI	GCAGC	2 cut(s)	141, 2913
BseYI	CCCAGC	1 cut(s)	2746
BsgI	GTGCAG	1 cut(s)	2736
Bsh1236I	CGCG	2 cut(s)	209, 1630
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	1166, 1308
BshNI	GGYRCC	1 cut(s)	2786
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	3022
BsiSI	CCGG	5 cut(s)	194, 356, 473, 620, 1797
BslFI	GGGAC	2 cut(s)	1777, 2729
BslI	CCNNNNNNNGG	3 cut(s)	1803, 2509, 3077
BsmAI	GTCTC	8 cut(s)	8, 301, 573, 1116, 2301, 2591, 2883, 2990
BsmBI	CGTCTC	1 cut(s)	573
BsmFI	GGGAC	2 cut(s)	1777, 2729
BsmI	GAATGC	2 cut(s)	917, 1915
BsnI	GGCC	2 cut(s)	1166, 1308
Bso31I	GGTCTC	1 cut(s)	2883
Bsp119I	TTCGAA	1 cut(s)	1271
Bsp1286I	GDGCHC	2 cut(s)	152, 3022
Bsp13I	TCCGGA	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	2119
BspACI	CCGC	5 cut(s)	243, 470, 1787, 2603, 2818
BspANI	GGCC	2 cut(s)	1166, 1308
BspCNI	CTCAG	9 cut(s)	622, 1000, 1387, 1450, 1459, 1531, 1551, 1935, 2877
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	209, 1630
BspLI	GGNNCC	6 cut(s)	709, 1530, 2268, 2745, 2788, 2914
BspPI	GGATC	7 cut(s)	29, 309, 582, 1295, 1873, 2052, 2336
BspQI	GCTCTTC	1 cut(s)	2584
BspT104I	TTCGAA	1 cut(s)	1271
BspT107I	GGYRCC	1 cut(s)	2786
BspTI	CTTAAG	1 cut(s)	1709
BspTNI	GGTCTC	1 cut(s)	2883
BsrDI	GCAATG	2 cut(s)	2875, 3040
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	7 cut(s)	607, 1237, 1530, 1579, 1995, 2514, 2636
BssECI	CCNNGG	4 cut(s)	696, 1795, 2119, 2141
BssNI	GRCGYC	2 cut(s)	74, 352
BssT1I	CCWWGG	1 cut(s)	2119
Bst2UI	CCWGG	4 cut(s)	923, 1305, 1584, 2143
Bst4CI	ACNGT	8 cut(s)	172, 178, 725, 2014, 2093, 2238, 2661, 2947
Bst6I	CTCTTC	1 cut(s)	2584
BstACI	GRCGYC	2 cut(s)	74, 352
BstAFI	CTTAAG	1 cut(s)	1709
BstAUI	TGTACA	1 cut(s)	714
BstBAI	YACGTR	1 cut(s)	1446
BstBI	TTCGAA	1 cut(s)	1271
BstC8I	GCNNGC	4 cut(s)	152, 1182, 2540, 3031
BstDSI	CCRYGG	1 cut(s)	2119
BstF5I	GGATG	7 cut(s)	409, 706, 868, 1027, 2129, 2477, 2537
BstFNI	CGCG	2 cut(s)	209, 1630
BstH2I	RGCGCY	2 cut(s)	124, 135
BstHHI	GCGC	2 cut(s)	123, 134
BstMAI	GTCTC	8 cut(s)	8, 301, 573, 1116, 2301, 2591, 2883, 2990
BstMCI	CGRYCG	1 cut(s)	46
BstNI	CCWGG	4 cut(s)	923, 1305, 1584, 2143
BstNSI	RCATGY	5 cut(s)	163, 1002, 1036, 1055, 3033
BstPAI	GACNNNNGTC	1 cut(s)	2603
BstSCI	CCNGG	7 cut(s)	355, 472, 921, 1303, 1582, 1795, 2141
BstSFI	CTRYAG	3 cut(s)	837, 2151, 2234
BstSLI	GKGCMC	2 cut(s)	152, 3022
BstUI	CGCG	2 cut(s)	209, 1630
BstV1I	GCAGC	2 cut(s)	141, 2913
BstV2I	GAAGAC	1 cut(s)	1617
BstX2I	RGATCY	1 cut(s)	1300
BstXI	CCANNNNNNTGG	1 cut(s)	1574
BstYI	RGATCY	1 cut(s)	1300
Bsu36I	CCTNAGG	1 cut(s)	1395
BsuI	GTATCC	1 cut(s)	1574
BsuRI	GGCC	2 cut(s)	1166, 1308
BtgI	CCRYGG	1 cut(s)	2119
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	7 cut(s)	409, 706, 868, 1027, 2129, 2477, 2537
BtsI	GCAGTG	2 cut(s)	2928, 2987
BtsIMutI	CAGTG	7 cut(s)	1464, 2010, 2629, 2719, 2882, 2928, 2987
Cac8I	GCNNGC	4 cut(s)	152, 1182, 2540, 3031
CaiI	CAGNNNCTG	1 cut(s)	1310
CfoI	GCGC	2 cut(s)	123, 134
Cfr13I	GGNCC	8 cut(s)	467, 617, 708, 1307, 1528, 1577, 2267, 2743
CseI	GACGC	5 cut(s)	54, 63, 198, 341, 663
Csp6I	GTAC	8 cut(s)	91, 115, 360, 715, 726, 775, 996, 1887
CviQI	GTAC	8 cut(s)	91, 115, 360, 715, 726, 775, 996, 1887
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	1164
Eam1104I	CTCTTC	1 cut(s)	2584
EarI	CTCTTC	1 cut(s)	2584
Eco130I	CCWWGG	1 cut(s)	2119
Eco31I	GGTCTC	1 cut(s)	2883
Eco32I	GATATC	2 cut(s)	1545, 2397
Eco47I	GGWCC	7 cut(s)	467, 617, 708, 1528, 1577, 2267, 2743
Eco47III	AGCGCT	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	1395
EcoO109I	RGGNCCY	3 cut(s)	1307, 2267, 2743
EcoRI	GAATTC	4 cut(s)	829, 967, 1601, 1736
EcoRII	CCWGG	4 cut(s)	921, 1303, 1582, 2141
EcoRV	GATATC	2 cut(s)	1545, 2397
EcoT14I	CCWWGG	1 cut(s)	2119
EcoT22I	ATGCAT	2 cut(s)	1443, 2188
ErhI	CCWWGG	1 cut(s)	2119
Esp3I	CGTCTC	1 cut(s)	573
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	2 cut(s)	1777, 2729
FauNDI	CATATG	2 cut(s)	2800, 2990
FblI	GTMKAC	1 cut(s)	2233
Fnu4HI	GCNGC	2 cut(s)	130, 2927
FokI	GGATG	7 cut(s)	416, 713, 875, 1034, 2136, 2484, 2544
Fsp4HI	GCNGC	2 cut(s)	130, 2927
FspBI	CTAG	6 cut(s)	375, 681, 909, 1778, 2444, 2847
GlaI	GCGC	2 cut(s)	122, 133
GluI	GCNGC	2 cut(s)	130, 2927
GsaI	CCCAGC	1 cut(s)	2750
HaeII	RGCGCY	2 cut(s)	124, 135
HaeIII	GGCC	2 cut(s)	1166, 1308
HapII	CCGG	5 cut(s)	194, 356, 473, 620, 1797
HgaI	GACGC	5 cut(s)	54, 63, 198, 341, 663
HhaI	GCGC	2 cut(s)	123, 134
Hin1I	GRCGYC	2 cut(s)	74, 352
Hin6I	GCGC	2 cut(s)	121, 132
HinP1I	GCGC	2 cut(s)	121, 132
HincII	GTYRAC	2 cut(s)	69, 1423
HindII	GTYRAC	2 cut(s)	69, 1423
HindIII	AAGCTT	2 cut(s)	452, 1335
HpaII	CCGG	5 cut(s)	194, 356, 473, 620, 1797
HphI	GGTGA	2 cut(s)	437, 1966
Hpy166II	GTNNAC	8 cut(s)	69, 467, 728, 884, 1423, 2234, 2379, 3020
Hpy8I	GTNNAC	8 cut(s)	69, 467, 728, 884, 1423, 2234, 2379, 3020
Hpy99I	CGWCG	7 cut(s)	79, 88, 100, 214, 679, 2067, 2097
HpyCH4III	ACNGT	8 cut(s)	172, 178, 725, 2014, 2093, 2238, 2661, 2947
HpyCH4IV	ACGT	3 cut(s)	1090, 1445, 2062
HpySE526I	ACGT	3 cut(s)	1090, 1445, 2062
Hsp92I	GRCGYC	2 cut(s)	74, 352
HspAI	GCGC	2 cut(s)	121, 132
Kpn2I	TCCGGA	1 cut(s)	193
LguI	GCTCTTC	1 cut(s)	2584
LmnI	GCTCC	6 cut(s)	671, 925, 1396, 1672, 1799, 2912
Lsp1109I	GCAGC	2 cut(s)	141, 2913
LweI	GCATC	6 cut(s)	52, 418, 1885, 2195, 2462, 2635
MaeI	CTAG	6 cut(s)	375, 681, 909, 1778, 2444, 2847
MaeII	ACGT	3 cut(s)	1090, 1445, 2062
MaeIII	GTNAC	8 cut(s)	172, 746, 979, 1024, 1462, 1817, 1972, 2655
MflI	RGATCY	1 cut(s)	1300
MhlI	GDGCHC	2 cut(s)	152, 3022
MlsI	TGGCCA	1 cut(s)	1166
MluNI	TGGCCA	1 cut(s)	1166
MlyI	GAGTC	4 cut(s)	38, 116, 1775, 1799
MmeI	TCCRAC	3 cut(s)	363, 552, 577
Mox20I	TGGCCA	1 cut(s)	1166
Mph1103I	ATGCAT	2 cut(s)	1443, 2188
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	1166
MslI	CAYNNNNRTG	3 cut(s)	1160, 2530, 2592
Msp20I	TGGCCA	1 cut(s)	1166
MspCI	CTTAAG	1 cut(s)	1709
MspI	CCGG	5 cut(s)	194, 356, 473, 620, 1797
MspR9I	CCNGG	7 cut(s)	357, 474, 923, 1305, 1584, 1797, 2143
Mva1269I	GAATGC	2 cut(s)	917, 1915
MvaI	CCWGG	4 cut(s)	923, 1305, 1584, 2143
MvnI	CGCG	2 cut(s)	209, 1630
NciI	CCSGG	3 cut(s)	357, 474, 1797
NcoI	CCATGG	1 cut(s)	2119
NdeI	CATATG	2 cut(s)	2800, 2990
NlaIV	GGNNCC	6 cut(s)	709, 1530, 2268, 2745, 2788, 2914
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	7 cut(s)	172, 746, 979, 1024, 1462, 1972, 2655
NsiI	ATGCAT	2 cut(s)	1443, 2188
NspI	RCATGY	5 cut(s)	163, 1002, 1036, 1055, 3033
NspV	TTCGAA	1 cut(s)	1271
PaeI	GCATGC	1 cut(s)	3033
PciI	ACATGT	2 cut(s)	998, 1051
PciSI	GCTCTTC	1 cut(s)	2584
PcsI	WCGNNNNNNNCGW	5 cut(s)	83, 92, 108, 2068, 2588
PctI	GAATGC	2 cut(s)	917, 1915
PdmI	GAANNNNTTC	1 cut(s)	604
PfoI	TCCNGGA	2 cut(s)	921, 1582
PkrI	GCNGC	2 cut(s)	131, 2928
Ple19I	CGATCG	1 cut(s)	46
PleI	GAGTC	4 cut(s)	37, 115, 1775, 1798
PpsI	GAGTC	4 cut(s)	37, 115, 1775, 1798
Ppu21I	YACGTR	1 cut(s)	1446
PpuMI	RGGWCCY	2 cut(s)	2267, 2743
PscI	ACATGT	2 cut(s)	998, 1051
PshAI	GACNNNNGTC	1 cut(s)	2603
PshBI	ATTAAT	1 cut(s)	2349
Psp1406I	AACGTT	1 cut(s)	1090
Psp5II	RGGWCCY	2 cut(s)	2267, 2743
Psp6I	CCWGG	4 cut(s)	921, 1303, 1582, 2141
PspFI	CCCAGC	1 cut(s)	2746
PspGI	CCWGG	4 cut(s)	921, 1303, 1582, 2141
PspN4I	GGNNCC	6 cut(s)	709, 1530, 2268, 2745, 2788, 2914
PspPI	GGNCC	8 cut(s)	467, 617, 708, 1307, 1528, 1577, 2267, 2743
PspPPI	RGGWCCY	2 cut(s)	2267, 2743
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstNI	CAGNNNCTG	1 cut(s)	1310
PsuI	RGATCY	1 cut(s)	1300
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	8 cut(s)	92, 116, 361, 716, 727, 776, 997, 1888
RsaNI	GTAC	8 cut(s)	91, 115, 360, 715, 726, 775, 996, 1887
RseI	CAYNNNNRTG	3 cut(s)	1160, 2530, 2592
SapI	GCTCTTC	1 cut(s)	2584
SatI	GCNGC	2 cut(s)	130, 2927
Sau96I	GGNCC	8 cut(s)	467, 617, 708, 1307, 1528, 1577, 2267, 2743
ScaI	AGTACT	1 cut(s)	776
SchI	GAGTC	4 cut(s)	38, 116, 1775, 1799
ScrFI	CCNGG	7 cut(s)	357, 474, 923, 1305, 1584, 1797, 2143
SduI	GDGCHC	2 cut(s)	152, 3022
SfaNI	GCATC	6 cut(s)	52, 418, 1885, 2195, 2462, 2635
SfcI	CTRYAG	3 cut(s)	837, 2151, 2234
SfuI	TTCGAA	1 cut(s)	1271
SinI	GGWCC	7 cut(s)	467, 617, 708, 1528, 1577, 2267, 2743
SmiMI	CAYNNNNRTG	3 cut(s)	1160, 2530, 2592
SmlI	CTYRAG	4 cut(s)	1332, 1616, 1709, 2301
SmoI	CTYRAG	4 cut(s)	1332, 1616, 1709, 2301
SphI	GCATGC	1 cut(s)	3033
SsiI	CCGC	5 cut(s)	243, 470, 1787, 2603, 2818
SspI	AATATT	2 cut(s)	1773, 2648
SspMI	CTAG	6 cut(s)	375, 681, 909, 1778, 2444, 2847
StyD4I	CCNGG	7 cut(s)	355, 472, 921, 1303, 1582, 1795, 2141
StyI	CCWWGG	1 cut(s)	2119
TaaI	ACNGT	8 cut(s)	172, 178, 725, 2014, 2093, 2238, 2661, 2947
TaiI	ACGT	3 cut(s)	1093, 1448, 2065
TaqII	GACCGA	2 cut(s)	130, 202
TatI	WGTACW	2 cut(s)	714, 774
TscAI	CASTG	7 cut(s)	1471, 2017, 2636, 2719, 2889, 2928, 2987
TseFI	GTSAC	7 cut(s)	172, 746, 979, 1024, 1462, 1972, 2655
TseI	GCWGC	2 cut(s)	129, 2926
Tsp45I	GTSAC	7 cut(s)	172, 746, 979, 1024, 1462, 1972, 2655
TspDTI	ATGAA	8 cut(s)	819, 822, 842, 1607, 1749, 2298, 2747, 3033
TspGWI	ACGGA	3 cut(s)	27, 72, 901
TspRI	CASTG	7 cut(s)	1471, 2017, 2636, 2719, 2889, 2928, 2987
Vha464I	CTTAAG	1 cut(s)	1709
VneI	GTGCAC	1 cut(s)	3018
VpaK11BI	GGWCC	7 cut(s)	467, 617, 708, 1528, 1577, 2267, 2743
VspI	ATTAAT	1 cut(s)	2349
XapI	RAATTY	8 cut(s)	829, 967, 1117, 1202, 1501, 1601, 1736, 2958
XbaI	TCTAGA	3 cut(s)	680, 2443, 2846
XceI	RCATGY	5 cut(s)	163, 1002, 1036, 1055, 3033
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	2233
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	6 cut(s)	375, 681, 909, 1778, 2444, 2847
ZrmI	AGTACT	1 cut(s)	776
Zsp2I	ATGCAT	2 cut(s)	1443, 2188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.