Rorug07G0009200

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002128
Physical Location & Seq
Forward (+)
754586 .. 767190
12605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0009200.1

Sequence Viewer

Length: 1005 bp
ATGGAAGATCCCACTTTTCTGAATCAATATGAAACGAACTCTCCAGACTACTCAATCGAAGATCACAATTTTCTGTCATTTTCTTTTAAGAGCTACTCATCTCACCCAAATTTTATTCCTGATCATCAAAATGGCACTGACCAAAGGCCAGAAAAACAGCCCAAGAACAACCACAGTAATTTGAACACTTGCACTAATACTAACCTTACAGTTACTGCCCCAACGGCTTCCTCTTTTTTCTCCTCACACCTAATTTCTTTTGACAACTCCAACTCATCACCGCCAACCACTTCTCATGATCAGCATTATGGTATGCACGGCACTATTCCAGTGAAGCCAGAGATGGGTTCTTATGGAGAATTAAATTTGATTTCCGAAGATGATTTCGTTGACCCCCAAACTTGTTTGCCAAAACATAGACAAGGGATCAAGAGGGCTGCTATTAGAAGTCCTTTACATGCTCAAGAGCACGTAATCGCTGAGAAAAAGCGTCGAGAAAATCTCAGCAAGCGGTTCATTGCTCTATCAGCCCTTCTACCAAGCCTAAAAAAGATCAATAAAGCTTCAGTGCTTGAAGAGGCCACAAAATACGTGAAACATCTTCAAGAACGTATGGTGATACTGGAGGAACAAGCAGCGAAGAAAACAGTGCAATCGGTGGTGTTAGTGAGGAGAACTCAGTACTCATCAGGGGATGATGATGATAAGTCTTACTCTGATGAGAGCTTTGGTAGATGCTCTGACCGGCGACTCCCTGAAATTGAAGCCAGATTTTTGGACAGAGAGGTTCTCATACGAATCCACTGTGAGAAAAAGAAAGGATGTTTGGCAATCATATTAAGTGAAATAGAGACTCTTGATCTCACCATTGTTAATAGCAGTATCTTGCCCTTTGGCAATTCAACTATTGATATTACTGTCGTTTCTCAGATGGATGTCGAGTTCAGCATGACGGTGACGGATCTTGTAAGAATTCTAAAACAGGCTTTGCTCATATTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

334

Amino Acids

37.78

Weight (kDa)

6.12

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 156 - 202 5.6e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 281, 511
AclWI GGATC 3 cut(s) 2, 434, 969
AcsI RAATTY 3 cut(s) 109, 364, 972
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 5 cut(s) 184, 575, 605, 764, 903
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
AloI GAACNNNNNNTCC 2 cut(s) 926, 958
AluBI AGCT 3 cut(s) 93, 563, 726
AluI AGCT 3 cut(s) 93, 563, 726
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 845
AlwI GGATC 3 cut(s) 2, 434, 969
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 2 cut(s) 146, 579
ApeKI GCWGC 2 cut(s) 437, 635
ApoI RAATTY 3 cut(s) 109, 364, 972
AsuHPI GGTGA 5 cut(s) 95, 270, 628, 856, 967
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 424, 647
BccI CCATC 2 cut(s) 337, 925
BceAI ACGGC 2 cut(s) 240, 334
BclI TGATCA 2 cut(s) 121, 298
BcoDI GTCTC 1 cut(s) 845
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 2 cut(s) 438, 636
BlsI GCNGC 2 cut(s) 439, 637
BmcAI AGTACT 1 cut(s) 683
BmsI GCATC 1 cut(s) 725
BplI GAGNNNNNCTC 6 cut(s) 486, 518, 661, 693, 774, 806
BpmI CTGGAG 2 cut(s) 27, 644
BpuEI CTTGAG 1 cut(s) 447
BsaAI YACGTR 2 cut(s) 472, 592
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 744
Bse1I ACTGG 2 cut(s) 329, 627
Bse3DI GCAATG 1 cut(s) 516
BseGI GGATG 3 cut(s) 700, 827, 940
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 4 cut(s) 471, 517, 692, 941
BseNI ACTGG 2 cut(s) 329, 627
BseRI GAGGAG 2 cut(s) 232, 685
BseXI GCAGC 2 cut(s) 424, 647
BshFI GGCC 2 cut(s) 148, 581
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 1 cut(s) 745
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 845
BsnI GGCC 2 cut(s) 148, 581
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 8 cut(s) 7, 61, 121, 298, 426, 552, 859, 961
BspACI CCGC 2 cut(s) 281, 511
BspANI GGCC 2 cut(s) 148, 581
BspCNI CTCAG 4 cut(s) 472, 516, 691, 940
BspHI TCATGA 1 cut(s) 295
BspPI GGATC 3 cut(s) 2, 434, 969
BsrDI GCAATG 1 cut(s) 516
BsrFI RCCGGY 1 cut(s) 744
BsrI ACTGG 2 cut(s) 329, 627
BssAI RCCGGY 1 cut(s) 744
BssMI GATC 8 cut(s) 7, 61, 121, 298, 426, 552, 859, 961
Bst4CI ACNGT 6 cut(s) 176, 211, 649, 806, 919, 955
Bst6I CTCTTC 1 cut(s) 570
BstBAI YACGTR 2 cut(s) 472, 592
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 4 cut(s) 480, 503, 678, 927
BstF5I GGATG 3 cut(s) 700, 827, 940
BstKTI GATC 8 cut(s) 10, 64, 124, 301, 429, 555, 862, 964
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 8 cut(s) 7, 61, 121, 298, 426, 552, 859, 961
BstMWI GCNNNNNNNGC 2 cut(s) 224, 527
BstNSI RCATGY 1 cut(s) 461
BstV1I GCAGC 2 cut(s) 424, 647
BstX2I RGATCY 2 cut(s) 7, 961
BstXI CCANNNNNNTGG 1 cut(s) 775
BstYI RGATCY 2 cut(s) 7, 961
BsuRI GGCC 2 cut(s) 148, 581
BtsCI GGATG 3 cut(s) 700, 827, 940
BtsIMutI CAGTG 5 cut(s) 135, 336, 573, 654, 802
Cac8I GCNNGC 1 cut(s) 509
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 744
CseI GACGC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 682
CviAII CATG 3 cut(s) 296, 458, 949
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 4 cut(s) 480, 503, 678, 927
DpnI GATC 8 cut(s) 9, 63, 123, 300, 428, 554, 861, 963
DpnII GATC 8 cut(s) 7, 61, 121, 298, 426, 552, 859, 961
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 972
FaeI CATG 3 cut(s) 299, 461, 952
FatI CATG 3 cut(s) 295, 457, 948
FbaI TGATCA 2 cut(s) 121, 298
Fnu4HI GCNGC 2 cut(s) 438, 636
FokI GGATG 3 cut(s) 707, 834, 947
Fsp4HI GCNGC 2 cut(s) 438, 636
GluI GCNGC 2 cut(s) 438, 636
GsuI CTGGAG 2 cut(s) 27, 644
HaeIII GGCC 2 cut(s) 148, 581
HapII CCGG 1 cut(s) 745
HgaI GACGC 1 cut(s) 479
Hin1II CATG 3 cut(s) 299, 461, 952
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 4 cut(s) 22, 750, 798, 853
HpaII CCGG 1 cut(s) 745
HphI GGTGA 5 cut(s) 95, 270, 628, 856, 967
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 5 cut(s) 21, 376, 718, 742, 930
Hpy188III TCNNGA 8 cut(s) 44, 119, 296, 430, 464, 494, 605, 857
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 1 cut(s) 495
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 6 cut(s) 176, 211, 649, 806, 919, 955
HpyCH4IV ACGT 3 cut(s) 471, 591, 610
HpyCH4V TGCA 3 cut(s) 192, 316, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 527
HpyF3I CTNAG 4 cut(s) 480, 503, 678, 927
HpySE526I ACGT 3 cut(s) 471, 591, 610
Hsp92II CATG 3 cut(s) 299, 461, 952
Ksp22I TGATCA 2 cut(s) 121, 298
Kzo9I GATC 8 cut(s) 7, 61, 121, 298, 426, 552, 859, 961
Lsp1109I GCAGC 2 cut(s) 424, 647
LweI GCATC 1 cut(s) 725
MaeII ACGT 3 cut(s) 471, 591, 610
MaeIII GTNAC 2 cut(s) 211, 955
MalI GATC 8 cut(s) 9, 63, 123, 300, 428, 554, 861, 963
MboI GATC 8 cut(s) 7, 61, 121, 298, 426, 552, 859, 961
MboII GAAGA 6 cut(s) 17, 71, 389, 587, 593, 652
MflI RGATCY 2 cut(s) 7, 961
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 9 cut(s) 67, 109, 178, 252, 359, 364, 759, 898, 972
MlyI GAGTC 2 cut(s) 744, 847
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 7 cut(s) 241, 253, 426, 571, 619, 663, 778
MseI TTAA 4 cut(s) 87, 362, 839, 873
MslI CAYNNNNRTG 3 cut(s) 129, 953, 998
MspI CCGG 1 cut(s) 745
MwoI GCNNNNNNNGC 2 cut(s) 224, 527
NdeII GATC 8 cut(s) 7, 61, 121, 298, 426, 552, 859, 961
NlaIII CATG 3 cut(s) 299, 461, 952
NmuCI GTSAC 1 cut(s) 955
NspI RCATGY 1 cut(s) 461
PagI TCATGA 1 cut(s) 295
PfeI GAWTC 2 cut(s) 22, 798
PkrI GCNGC 2 cut(s) 439, 637
PleI GAGTC 2 cut(s) 744, 847
PpsI GAGTC 2 cut(s) 744, 847
Ppu21I YACGTR 2 cut(s) 472, 592
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 2 cut(s) 7, 961
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 3 cut(s) 129, 953, 998
SaqAI TTAA 4 cut(s) 87, 362, 839, 873
SatI GCNGC 2 cut(s) 438, 636
Sau3AI GATC 8 cut(s) 7, 61, 121, 298, 426, 552, 859, 961
ScaI AGTACT 1 cut(s) 683
SchI GAGTC 2 cut(s) 744, 847
SduI GDGCHC 1 cut(s) 471
SetI ASST 9 cut(s) 95, 207, 252, 474, 565, 594, 613, 728, 789
SfaNI GCATC 1 cut(s) 725
SmiMI CAYNNNNRTG 3 cut(s) 129, 953, 998
SmlI CTYRAG 1 cut(s) 462
SmoI CTYRAG 1 cut(s) 462
Sse9I AATT 9 cut(s) 67, 109, 178, 252, 359, 364, 759, 898, 972
SsiI CCGC 2 cut(s) 281, 511
TaaI ACNGT 6 cut(s) 176, 211, 649, 806, 919, 955
TaiI ACGT 3 cut(s) 474, 594, 613
TaqI TCGA 3 cut(s) 57, 493, 939
TasI AATT 9 cut(s) 67, 109, 178, 252, 359, 364, 759, 898, 972
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 2 cut(s) 22, 798
Tru1I TTAA 4 cut(s) 87, 362, 839, 873
Tru9I TTAA 4 cut(s) 87, 362, 839, 873
TscAI CASTG 5 cut(s) 142, 336, 573, 654, 809
TseFI GTSAC 1 cut(s) 955
TseI GCWGC 2 cut(s) 437, 635
Tsp45I GTSAC 1 cut(s) 955
TspDTI ATGAA 2 cut(s) 45, 505
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 5 cut(s) 142, 336, 573, 654, 809
XapI RAATTY 3 cut(s) 109, 364, 972
XceI RCATGY 1 cut(s) 461
ZrmI AGTACT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.