U3 small nucleolar ribonucleoprotein protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G66540 AT5G66540 |
| fragaria_vesca | FvH4_5g05471 FvH4_5g05471 |
| malus_domestica | MD01G1006000.v1.1 MD06G1172400.v1.1 MD14G1178200.v1.1 |
| prunus_persica | Prupe.5G171700_v2.0.a1 Prupe.5G171700_v2.0.a1 |
| pyrus_communis | pycom06g15350 |
| rosa_chinensis | RchiOBHm_Chr7g0193361 |
| rosa_laevigata | RLG00000004276 RLG00000024925 |
| rosa_multiflora | Rmu_sc0002284.1_g000016 |
| rosa_roxburghii | Rroxscaffold_3G00262180 Rroxscaffold_7G00204760 |
| rosa_rugosa | Rorug03G0051600 Rorug06G0002900 Rorug07G0009200 |
| rosa_samantha | Rh1CG244200 Rh3AG109700 Rh3BG113100 Rh3CG114900 Rh3DG114700 Rh6AG121600 Rh6BG115700 Rh6BG115800 Rh6BG115900 Rh6BG116000 Rh6CG114400 Rh6CG114500 Rh6CG114600 Rh6CG376100 Rh6DG103200 Rh6DG103300 Rh6DG103400 Rh7AG135000 Rh7AG135400 Rh7BG135700 Rh7CG139100 Rh7DG137100 |
| rosa_wichuraiana | Rw6G010490 Rw6G010500 Rw7G011540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 131 |
| AcsI | RAATTY | 1 cut(s) | 245 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 290 |
| AgsI | TTSAA | 1 cut(s) | 10 |
| AluBI | AGCT | 2 cut(s) | 230, 254 |
| AluI | AGCT | 2 cut(s) | 230, 254 |
| Alw26I | GTCTC | 1 cut(s) | 282 |
| ApoI | RAATTY | 1 cut(s) | 245 |
| AxyI | CCTNAGG | 1 cut(s) | 159 |
| BanII | GRGCYC | 1 cut(s) | 18 |
| BauI | CACGAG | 1 cut(s) | 285 |
| BccI | CCATC | 1 cut(s) | 265 |
| BceAI | ACGGC | 2 cut(s) | 307, 319 |
| BcoDI | GTCTC | 1 cut(s) | 282 |
| BmiI | GGNNCC | 2 cut(s) | 17, 156 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 290 |
| Bse21I | CCTNAGG | 1 cut(s) | 159 |
| Bse3DI | GCAATG | 1 cut(s) | 153 |
| BseGI | GGATG | 1 cut(s) | 276 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BseMI | GCAATG | 1 cut(s) | 153 |
| BseMII | CTCAG | 1 cut(s) | 150 |
| BsiSI | CCGG | 1 cut(s) | 174 |
| BslFI | GGGAC | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BsmAI | GTCTC | 1 cut(s) | 282 |
| BsmBI | CGTCTC | 1 cut(s) | 282 |
| BsmFI | GGGAC | 1 cut(s) | 89 |
| Bsp1286I | GDGCHC | 1 cut(s) | 18 |
| BspACI | CCGC | 1 cut(s) | 131 |
| BspCNI | CTCAG | 1 cut(s) | 151 |
| BspLI | GGNNCC | 2 cut(s) | 17, 156 |
| BsrDI | GCAATG | 1 cut(s) | 153 |
| BssSI | CACGAG | 1 cut(s) | 285 |
| Bst2BI | CACGAG | 1 cut(s) | 285 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 1 cut(s) | 159 |
| BstF5I | GGATG | 1 cut(s) | 276 |
| BstMAI | GTCTC | 1 cut(s) | 282 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 128, 152, 260 |
| BstNSI | RCATGY | 1 cut(s) | 122 |
| Bsu36I | CCTNAGG | 1 cut(s) | 159 |
| BtsCI | GGATG | 1 cut(s) | 276 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CviAII | CATG | 2 cut(s) | 119, 316 |
| CviJI | RGCY | 7 cut(s) | 16, 104, 155, 230, 254, 283, 314 |
| CviKI_1 | RGCY | 7 cut(s) | 16, 104, 155, 230, 254, 283, 314 |
| DdeI | CTNAG | 1 cut(s) | 159 |
| DraI | TTTAAA | 1 cut(s) | 250 |
| Eco24I | GRGCYC | 1 cut(s) | 18 |
| Eco32I | GATATC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| Eco81I | CCTNAGG | 1 cut(s) | 159 |
| EcoRV | GATATC | 1 cut(s) | 187 |
| EcoT38I | GRGCYC | 1 cut(s) | 18 |
| Esp3I | CGTCTC | 1 cut(s) | 282 |
| FaeI | CATG | 2 cut(s) | 122, 319 |
| FaiI | YATR | 4 cut(s) | 114, 120, 308, 317 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 186, 218 |
| FaqI | GGGAC | 1 cut(s) | 89 |
| FatI | CATG | 2 cut(s) | 118, 315 |
| FokI | GGATG | 1 cut(s) | 283 |
| FriOI | GRGCYC | 1 cut(s) | 18 |
| HapII | CCGG | 1 cut(s) | 174 |
| Hin1II | CATG | 2 cut(s) | 122, 319 |
| HpaII | CCGG | 1 cut(s) | 174 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| HpyCH4V | TGCA | 2 cut(s) | 122, 151 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 128, 152, 260 |
| HpyF3I | CTNAG | 1 cut(s) | 159 |
| Hsp92II | CATG | 2 cut(s) | 122, 319 |
| LmnI | GCTCC | 2 cut(s) | 21, 160 |
| LpnPI | CCDG | 7 cut(s) | 32, 86, 137, 138, 171, 187, 194 |
| MaeIII | GTNAC | 1 cut(s) | 256 |
| MboII | GAAGA | 1 cut(s) | 119 |
| MhlI | GDGCHC | 1 cut(s) | 18 |
| MluCI | AATT | 1 cut(s) | 245 |
| MnlI | CCTC | 2 cut(s) | 66, 154 |
| MseI | TTAA | 1 cut(s) | 249 |
| MspI | CCGG | 1 cut(s) | 174 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 128, 152, 260 |
| NlaIII | CATG | 2 cut(s) | 122, 319 |
| NlaIV | GGNNCC | 2 cut(s) | 17, 156 |
| NmuCI | GTSAC | 1 cut(s) | 256 |
| NspI | RCATGY | 1 cut(s) | 122 |
| PspN4I | GGNNCC | 2 cut(s) | 17, 156 |
| SaqAI | TTAA | 1 cut(s) | 249 |
| SduI | GDGCHC | 1 cut(s) | 18 |
| SetI | ASST | 6 cut(s) | 30, 100, 127, 213, 232, 256 |
| Sse9I | AATT | 1 cut(s) | 245 |
| SsiI | CCGC | 1 cut(s) | 131 |
| TasI | AATT | 1 cut(s) | 245 |
| Tru1I | TTAA | 1 cut(s) | 249 |
| Tru9I | TTAA | 1 cut(s) | 249 |
| TseFI | GTSAC | 1 cut(s) | 256 |
| Tsp45I | GTSAC | 1 cut(s) | 256 |
| TspDTI | ATGAA | 2 cut(s) | 129, 156 |
| XapI | RAATTY | 1 cut(s) | 245 |
| XceI | RCATGY | 1 cut(s) | 122 |