Rh1CG244200

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002128
Physical Location & Seq
Reverse (-)
50529146 .. 50536405
7260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG244200.1

Sequence Viewer

Length: 477 bp
ATGGAAAATGGGAAAGTCAAATCCACTAGTGGGGAACTTTTTATGGCGGCAACGCCTTGGGCCATGCGTAAGCGCCATATGAATCTAGGGGAAGGTGAGGATGACGGGGATGGCATGGATGCAAGATATGAAGACGTCTTTGGGAAAAAGAAACTTTCTACCCACGAAAAGCAGCAACTGAAACTTAAGTCCGAAATAGAGCAGAGGGAAAAGGCAAATATGGACCCCAAAACTTGGACCATGCGGGGAAAGGTAACTGCAACTAAAAGGCCACCGAACAGTGCGTTAGAAGTTGTTCTAGATTTTGAACACAATGTTAGACGTGCCCCTCCAATCACAGAGGAGGTTACAGTAGCAGTTAAGGATATGATCCGGAAAAGGATCGAGCAGGAACTTTTTGATGACATTCAAGGGGCTCCTGCTTTACCTACTAAAGCTCCAAGAGAAACAAAGGAGATGATAAGCATTATTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Mpp10

Protein Analysis

158

Amino Acids

17.99

Weight (kDa)

7.92

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpp10 PF04006 41 - 137 5.6e-33 Mpp10 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 372
AciI CCGC 2 cut(s) 47, 244
AclWI GGATC 2 cut(s) 364, 389
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 30, 234
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 308, 410
AhlI ACTAGT 1 cut(s) 26
AjiI CACGTC 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
AlwI GGATC 2 cut(s) 364, 389
AlwNI CAGNNNCTG 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 372
AoxI GGCC 2 cut(s) 60, 269
ApeKI GCWGC 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 3 cut(s) 60, 223, 237
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 2 cut(s) 223, 237
BaeGI GKGCMC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 104
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 3 cut(s) 27, 86, 299
BfmI CTRYAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 76
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 2 cut(s) 48, 173
BlsI GCNGC 2 cut(s) 49, 174
Bme18I GGWCC 2 cut(s) 223, 237
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 3 cut(s) 60, 223, 237
BmiI GGNNCC 2 cut(s) 225, 417
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 234
BseAI TCCGGA 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 3 cut(s) 106, 115, 124
BseLI CCNNNNNNNGG 2 cut(s) 30, 234
BseRI GAGGAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 2 cut(s) 62, 271
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 30, 234
BsnI GGCC 2 cut(s) 62, 271
Bsp1286I GDGCHC 2 cut(s) 328, 418
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 369, 381
BspACI CCGC 2 cut(s) 47, 244
BspANI GGCC 2 cut(s) 62, 271
BspEI TCCGGA 1 cut(s) 372
BspLI GGNNCC 2 cut(s) 225, 417
BspPI GGATC 2 cut(s) 364, 389
BspTI CTTAAG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 2 cut(s) 369, 381
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 281, 352
BstACI GRCGYC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 185
BstF5I GGATG 3 cut(s) 106, 115, 124
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 372, 384
BstMBI GATC 2 cut(s) 369, 381
BstSFI CTRYAG 1 cut(s) 473
BstSLI GKGCMC 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 138
BsuRI GGCC 2 cut(s) 62, 271
BtrI CACGTC 1 cut(s) 323
BtsCI GGATG 3 cut(s) 106, 115, 124
BtsIMutI CAGTG 1 cut(s) 286
CaiI CAGNNNCTG 1 cut(s) 178
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 60, 223, 237
CviAII CATG 3 cut(s) 64, 115, 241
CviJI RGCY 4 cut(s) 62, 271, 416, 437
CviKI_1 RGCY 4 cut(s) 62, 271, 416, 437
DpnI GATC 2 cut(s) 371, 383
DpnII GATC 2 cut(s) 369, 381
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 418
Eco47I GGWCC 2 cut(s) 223, 237
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 3 cut(s) 67, 118, 244
FatI CATG 3 cut(s) 63, 114, 240
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 48, 173
FokI GGATG 3 cut(s) 113, 122, 131
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 48, 173
FspBI CTAG 3 cut(s) 27, 86, 299
GlaI GCGC 1 cut(s) 74
GluI GCNGC 2 cut(s) 48, 173
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 2 cut(s) 62, 271
HapII CCGG 1 cut(s) 373
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 3 cut(s) 67, 118, 244
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 373
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 299, 373
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 281, 352
HpyCH4IV ACGT 2 cut(s) 135, 322
HpyCH4V TGCA 2 cut(s) 122, 260
HpySE526I ACGT 2 cut(s) 135, 322
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 3 cut(s) 67, 118, 244
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 369, 381
LmnI GCTCC 2 cut(s) 421, 442
LpnPI CCDG 3 cut(s) 374, 386, 432
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 109
MaeI CTAG 3 cut(s) 27, 86, 299
MaeII ACGT 2 cut(s) 135, 322
MaeIII GTNAC 2 cut(s) 253, 346
MalI GATC 2 cut(s) 371, 383
MboI GATC 2 cut(s) 369, 381
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 328, 418
MnlI CCTC 5 cut(s) 91, 198, 334, 337, 339
MroI TCCGGA 1 cut(s) 372
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 2 cut(s) 186, 360
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 373
NdeI CATATG 1 cut(s) 78
NdeII GATC 2 cut(s) 369, 381
NlaIII CATG 3 cut(s) 67, 118, 244
NlaIV GGNNCC 2 cut(s) 225, 417
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 82
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 2 cut(s) 49, 174
PspN4I GGNNCC 2 cut(s) 225, 417
PspPI GGNCC 3 cut(s) 60, 223, 237
PstNI CAGNNNCTG 1 cut(s) 178
SaqAI TTAA 2 cut(s) 186, 360
SatI GCNGC 2 cut(s) 48, 173
Sau3AI GATC 2 cut(s) 369, 381
Sau96I GGNCC 3 cut(s) 60, 223, 237
SduI GDGCHC 2 cut(s) 328, 418
SetI ASST 7 cut(s) 97, 138, 255, 325, 348, 430, 439
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 473
SinI GGWCC 2 cut(s) 223, 237
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 26
SsiI CCGC 2 cut(s) 47, 244
SspMI CTAG 3 cut(s) 27, 86, 299
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 281, 352
TaiI ACGT 2 cut(s) 138, 325
TaqI TCGA 1 cut(s) 384
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 2 cut(s) 186, 360
Tru9I TTAA 2 cut(s) 186, 360
TscAI CASTG 1 cut(s) 286
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 95, 144
TspRI CASTG 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 234
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 223, 237
XbaI TCTAGA 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 3 cut(s) 27, 86, 299
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.