Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002128

Physical Location & Seq

Genomic Coordinates Reverse (-)

17951593 .. 17954057

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG115700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAATCTAGGGGAAGCTGAGGACGACGGGGATGGCAAGGATGCAAGATATGAAGACTTCTTTGGGAAAAAGGAACTTTCTACCCATGAAAAGCAGCAACTGAAACTTAAGTCCGAAATAGAGCAGAGGGAAAAAGCAAATATGGACCCCAAAACTTGGACCATGCGGGGAGAGGTAACTGCAACAAAAAGGCCACCGAACAGTGCGTTAGAAGTTGATCTAGATTTTGAACACAATGTTAGACCCGCCCCTCCGATCACAGAGGAGGTTACAGTAGCAGTTGAGGATATGATCCGGAAAAGGATTGAGCAGGAACTTTTTGATGATGTTCAAAGGGCTCCTGCTTTACCTACTAAGGCACCAAGAGAAAGAAAGGAGATGGATGAGAATAAGAGCAAGAAAGGACTGGCTGAAGATTATGAGATTGCACCTGTGGCGGTCTCTGATGCAGCAATGCTAGCTCCTGAGGAAGTATTTTCGGGCAAAGGTGATATTAAAGAAGAAGCAGAACTTACACAGGCGGAGAGAAAAAGGAGGAGAGCTAACAAGAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACAGCAACAAGGACAGCATCGAAGCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Mpp10

Protein Analysis

210

Amino Acids

23.94

Weight (kDa)

5.96

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpp10	PF04006	18 - 141	4.6e-40	Mpp10 protein
Mpp10	PF04006	141 - 191	5.5e-10	Mpp10 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66540 AT5G66540
fragaria_vesca	FvH4_5g05471 FvH4_5g05471
malus_domestica	MD01G1006000.v1.1 MD06G1172400.v1.1 MD14G1178200.v1.1
prunus_persica	Prupe.5G171700_v2.0.a1 Prupe.5G171700_v2.0.a1
pyrus_communis	pycom06g15350
rosa_chinensis	RchiOBHm_Chr7g0193361
rosa_laevigata	RLG00000004276 RLG00000024925
rosa_multiflora	Rmu_sc0002284.1_g000016
rosa_roxburghii	Rroxscaffold_3G00262180 Rroxscaffold_7G00204760
rosa_rugosa	Rorug03G0051600 Rorug06G0002900 Rorug07G0009200
rosa_samantha	Rh1CG244200 Rh3AG109700 Rh3BG113100 Rh3CG114900 Rh3DG114700 Rh6AG121600 Rh6BG115700 Rh6BG115800 Rh6BG115900 Rh6BG116000 Rh6CG114400 Rh6CG114500 Rh6CG114600 Rh6CG376100 Rh6DG103200 Rh6DG103300 Rh6DG103400 Rh7AG135000 Rh7AG135400 Rh7BG135700 Rh7CG139100 Rh7DG137100
rosa_wichuraiana	Rw6G010490 Rw6G010500 Rw7G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	156
AccIII	TCCGGA	1 cut(s)	294
AciI	CCGC	4 cut(s)	166, 246, 437, 521
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflII	CTTAAG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	230, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	4 cut(s)	17, 461, 542, 566
AluI	AGCT	4 cut(s)	17, 461, 542, 566
Alw26I	GTCTC	2 cut(s)	445, 594
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	100
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	94, 449
ApoI	RAATTY	1 cut(s)	557
AspS9I	GGNCC	2 cut(s)	145, 159
AsuHPI	GGTGA	1 cut(s)	500
AsuNHI	GCTAGC	1 cut(s)	457
AvaII	GGWCC	2 cut(s)	145, 159
AxyI	CCTNAGG	1 cut(s)	465
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	340
BauI	CACGAG	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	106, 461
BccI	CCATC	3 cut(s)	26, 373, 577
BcoDI	GTCTC	2 cut(s)	445, 594
BfaI	CTAG	3 cut(s)	8, 221, 458
BfrI	CTTAAG	1 cut(s)	107
BisI	GCNGC	2 cut(s)	95, 450
BlsI	GCNGC	2 cut(s)	96, 451
Bme18I	GGWCC	2 cut(s)	145, 159
BmgT120I	GGNCC	2 cut(s)	145, 159
BmiI	GGNNCC	3 cut(s)	147, 339, 360
BmsI	GCATC	3 cut(s)	31, 436, 627
BmtI	GCTAGC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	411
Bse21I	CCTNAGG	1 cut(s)	465
Bse3DI	GCAATG	1 cut(s)	459
BseAI	TCCGGA	1 cut(s)	294
BseGI	GGATG	4 cut(s)	37, 46, 388, 588
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	9, 456
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	278, 550
BseXI	GCAGC	2 cut(s)	106, 461
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	445, 594
BsnI	GGCC	1 cut(s)	193
Bso31I	GGTCTC	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	217, 255, 291
BspACI	CCGC	4 cut(s)	166, 246, 437, 521
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	2 cut(s)	10, 457
BspEI	TCCGGA	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	147, 339, 360
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	217, 255, 291
BssSI	CACGAG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	597
Bst4CI	ACNGT	2 cut(s)	203, 274
BstAFI	CTTAAG	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	3 cut(s)	18, 354, 465
BstF5I	GGATG	4 cut(s)	37, 46, 388, 588
BstKTI	GATC	3 cut(s)	220, 258, 294
BstMAI	GTCTC	2 cut(s)	445, 594
BstMBI	GATC	3 cut(s)	217, 255, 291
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 458, 572
BstV1I	GCAGC	2 cut(s)	106, 461
BstV2I	GAAGAC	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	4 cut(s)	37, 46, 388, 588
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	459
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	145, 159
CviAII	CATG	2 cut(s)	86, 163
CviJI	RGCY	9 cut(s)	17, 193, 338, 410, 461, 542, 566, 595, 626
CviKI_1	RGCY	9 cut(s)	17, 193, 338, 410, 461, 542, 566, 595, 626
DdeI	CTNAG	3 cut(s)	18, 354, 465
DpnI	GATC	3 cut(s)	219, 257, 293
DpnII	GATC	3 cut(s)	217, 255, 291
DraI	TTTAAA	1 cut(s)	562
EciI	GGCGGA	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	145, 159
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	2 cut(s)	89, 166
FaiI	YATR	8 cut(s)	51, 87, 143, 164, 290, 420, 629, 631
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	2 cut(s)	85, 162
FauI	CCCGC	2 cut(s)	159, 253
FauNDI	CATATG	1 cut(s)	629
Fnu4HI	GCNGC	2 cut(s)	95, 450
FokI	GGATG	4 cut(s)	44, 53, 395, 595
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	95, 450
FspBI	CTAG	3 cut(s)	8, 221, 458
GluI	GCNGC	2 cut(s)	95, 450
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	2 cut(s)	89, 166
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	1 cut(s)	500
Hpy188I	TCNGA	3 cut(s)	115, 255, 445
Hpy188III	TCNNGA	3 cut(s)	221, 295, 464
Hpy99I	CGWCG	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	203, 274
HpyCH4V	TGCA	4 cut(s)	44, 182, 428, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 458, 572
HpyF3I	CTNAG	3 cut(s)	18, 354, 465
Hsp92II	CATG	2 cut(s)	89, 166
Kpn2I	TCCGGA	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	217, 255, 291
LmnI	GCTCC	2 cut(s)	343, 466
LpnPI	CCDG	7 cut(s)	296, 308, 354, 392, 444, 477, 503
Lsp1109I	GCAGC	2 cut(s)	106, 461
LweI	GCATC	3 cut(s)	31, 436, 627
MaeI	CTAG	3 cut(s)	8, 221, 458
MaeIII	GTNAC	3 cut(s)	175, 268, 568
MalI	GATC	3 cut(s)	219, 257, 293
MboI	GATC	3 cut(s)	217, 255, 291
MboII	GAAGA	3 cut(s)	65, 425, 512
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	1 cut(s)	557
MnlI	CCTC	9 cut(s)	13, 120, 166, 256, 259, 261, 277, 460, 528
MroI	TCCGGA	1 cut(s)	294
MseI	TTAA	3 cut(s)	108, 495, 561
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	434, 458, 572
NdeI	CATATG	1 cut(s)	629
NdeII	GATC	3 cut(s)	217, 255, 291
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	2 cut(s)	89, 166
NlaIV	GGNNCC	3 cut(s)	147, 339, 360
NmuCI	GTSAC	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	96, 451
PspN4I	GGNNCC	3 cut(s)	147, 339, 360
PspPI	GGNCC	2 cut(s)	145, 159
PstNI	CAGNNNCTG	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	108, 495, 561
SatI	GCNGC	2 cut(s)	95, 450
Sau3AI	GATC	3 cut(s)	217, 255, 291
Sau96I	GGNCC	2 cut(s)	145, 159
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	9 cut(s)	19, 177, 270, 352, 433, 463, 490, 544, 568
SfaNI	GCATC	3 cut(s)	31, 436, 627
SinI	GGWCC	2 cut(s)	145, 159
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	557
SsiI	CCGC	4 cut(s)	166, 246, 437, 521
SspMI	CTAG	3 cut(s)	8, 221, 458
TaaI	ACNGT	2 cut(s)	203, 274
TaqI	TCGA	1 cut(s)	621
TasI	AATT	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	108, 495, 561
Tru9I	TTAA	3 cut(s)	108, 495, 561
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	2 cut(s)	94, 449
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	3 cut(s)	17, 66, 102
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	156
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	145, 159
XapI	RAATTY	1 cut(s)	557
XbaI	TCTAGA	1 cut(s)	220
XspI	CTAG	3 cut(s)	8, 221, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.