Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002128

Physical Location & Seq

Genomic Coordinates Forward (+)

13025042 .. 13025374

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG103300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGGCCGGTAGCGAAGCGCTGAACTCCGTTAAAGCGACGGAGCCAACGCAGTGGCTGGCGCCTAGCCCCGACCTCTCTGAAAAGGCTCGAGCCGCATTGAAGAACCTCGAACCTCTTCTCCTCCATCAGGCCGTTCACGCCGAAATCGCCTTTCGGTCAGCTCCTGGTGGACGGCTTCGACGCCGAGCAGATATGGCAGCAAATCGATATCCAATCCCAGCCGCTCATCTCGAGCCTCCGCCGCGAATTGAAGCGGTACGAGAAGAATCCGGCGGAGATCAAGAAGCTGAAGGTGGTTGTGGACGGAGAGGAGAAGGTTCTGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Mpp10

Protein Analysis

110

Amino Acids

11.63

Weight (kDa)

6.29

Isoelectric Point (pI)

69.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66540 AT5G66540
fragaria_vesca	FvH4_5g05471 FvH4_5g05471
malus_domestica	MD01G1006000.v1.1 MD06G1172400.v1.1 MD14G1178200.v1.1
prunus_persica	Prupe.5G171700_v2.0.a1 Prupe.5G171700_v2.0.a1
pyrus_communis	pycom06g15350
rosa_chinensis	RchiOBHm_Chr7g0193361
rosa_laevigata	RLG00000004276 RLG00000024925
rosa_multiflora	Rmu_sc0002284.1_g000016
rosa_roxburghii	Rroxscaffold_3G00262180 Rroxscaffold_7G00204760
rosa_rugosa	Rorug03G0051600 Rorug06G0002900 Rorug07G0009200
rosa_samantha	Rh1CG244200 Rh3AG109700 Rh3BG113100 Rh3CG114900 Rh3DG114700 Rh6AG121600 Rh6BG115700 Rh6BG115800 Rh6BG115900 Rh6BG116000 Rh6CG114400 Rh6CG114500 Rh6CG114600 Rh6CG376100 Rh6DG103200 Rh6DG103300 Rh6DG103400 Rh7AG135000 Rh7AG135400 Rh7BG135700 Rh7CG139100 Rh7DG137100
rosa_wichuraiana	Rw6G010490 Rw6G010500 Rw7G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AccBSI	CCGCTC	1 cut(s)	227
AccII	CGCG	1 cut(s)	247
AciI	CCGC	7 cut(s)	5, 96, 225, 242, 245, 257, 276
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	2 cut(s)	62, 184
AfaI	GTAC	1 cut(s)	261
AfeI	AGCGCT	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	103, 254
AjnI	CCWGG	1 cut(s)	166
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	3 cut(s)	164, 290, 330
AluI	AGCT	3 cut(s)	164, 290, 330
AlwNI	CAGNNNCTG	2 cut(s)	58, 167
Ama87I	CYCGRG	2 cut(s)	90, 233
Aor51HI	AGCGCT	1 cut(s)	21
AoxI	GGCC	2 cut(s)	6, 132
ApeKI	GCWGC	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	117
AspLEI	GCGC	2 cut(s)	22, 64
AvaI	CYCGRG	2 cut(s)	90, 233
BanI	GGYRCC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	2 cut(s)	119, 191
BciT130I	CCWGG	1 cut(s)	168
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	2 cut(s)	23, 65
BisI	GCNGC	5 cut(s)	6, 96, 201, 225, 245
BlsI	GCNGC	5 cut(s)	7, 97, 202, 226, 246
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	2 cut(s)	90, 233
BmiI	GGNNCC	2 cut(s)	45, 63
BmrFI	CCNGG	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	208
BsaHI	GRCGYC	2 cut(s)	62, 184
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	113, 327
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	8, 134
BshNI	GGYRCC	1 cut(s)	61
BshVI	ATCGAT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	2 cut(s)	90, 233
BsiSI	CCGG	2 cut(s)	9, 273
BslI	CCNNNNNNNGG	1 cut(s)	130
BsnI	GGCC	2 cut(s)	8, 134
BsoBI	CYCGRG	2 cut(s)	90, 233
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	7 cut(s)	5, 96, 225, 242, 245, 257, 276
BspANI	GGCC	2 cut(s)	8, 134
BspDI	ATCGAT	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	45, 63
BspT107I	GGYRCC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	2 cut(s)	62, 184
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	2 cut(s)	62, 184
BstC8I	GCNNGC	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	247
BstH2I	RGCGCY	2 cut(s)	23, 65
BstHHI	GCGC	2 cut(s)	22, 64
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 140, 149, 197, 244
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	54
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	8, 134
BsuTUI	ATCGAT	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	2 cut(s)	58, 167
CfoI	GCGC	2 cut(s)	22, 64
Cfr10I	RCCGGY	1 cut(s)	8
ClaI	ATCGAT	1 cut(s)	208
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	260
CviQI	GTAC	1 cut(s)	260
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	2 cut(s)	231, 291
EclXI	CGGCCG	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	212
Eco47III	AGCGCT	1 cut(s)	21
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	2 cut(s)	90, 233
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	212
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
FaiI	YATR	1 cut(s)	197
Fnu4HI	GCNGC	5 cut(s)	6, 96, 201, 225, 245
Fsp4HI	GCNGC	5 cut(s)	6, 96, 201, 225, 245
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	21, 63
GluI	GCNGC	5 cut(s)	6, 96, 201, 225, 245
GsaI	CCCAGC	1 cut(s)	224
HaeII	RGCGCY	2 cut(s)	23, 65
HaeIII	GGCC	2 cut(s)	8, 134
HapII	CCGG	2 cut(s)	9, 273
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	22, 64
Hin1I	GRCGYC	2 cut(s)	62, 184
Hin6I	GCGC	2 cut(s)	20, 62
HinP1I	GCGC	2 cut(s)	20, 62
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	2 cut(s)	9, 273
Hpy166II	GTNNAC	3 cut(s)	139, 173, 305
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	3 cut(s)	233, 284, 324
Hpy8I	GTNNAC	3 cut(s)	139, 173, 305
Hpy99I	CGWCG	2 cut(s)	43, 186
HpyAV	CCTTC	2 cut(s)	287, 311
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 140, 149, 197, 244
Hsp92I	GRCGYC	2 cut(s)	62, 184
HspAI	GCGC	2 cut(s)	20, 62
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	2 cut(s)	43, 169
LpnPI	CCDG	8 cut(s)	22, 44, 116, 153, 180, 234, 286, 309
Lsp1109I	GCAGC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	66
MalI	GATC	1 cut(s)	282
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	110, 115, 278
MluCI	AATT	1 cut(s)	249
Mly113I	GGCGCC	1 cut(s)	62
MnlI	CCTC	6 cut(s)	86, 119, 126, 134, 249, 305
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	1 cut(s)	33
MspI	CCGG	2 cut(s)	9, 273
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	5 cut(s)	95, 140, 149, 197, 244
NarI	GGCGCC	1 cut(s)	62
NdeII	GATC	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	45, 63
NmeAIII	GCCGAG	1 cut(s)	212
PaeR7I	CTCGAG	2 cut(s)	90, 233
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	5 cut(s)	7, 97, 202, 226, 246
PluTI	GGCGCC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	45, 63
PspXI	VCTCGAGB	1 cut(s)	90
PstNI	CAGNNNCTG	2 cut(s)	58, 167
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	5 cut(s)	6, 96, 201, 225, 245
Sau3AI	GATC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	8 cut(s)	78, 111, 118, 166, 292, 298, 322, 332
SfoI	GGCGCC	1 cut(s)	63
Sfr274I	CTCGAG	2 cut(s)	90, 233
SlaI	CTCGAG	2 cut(s)	90, 233
SmlI	CTYRAG	2 cut(s)	90, 233
SmoI	CTYRAG	2 cut(s)	90, 233
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	7 cut(s)	5, 96, 225, 242, 245, 257, 276
SspDI	GGCGCC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	166
TaqI	TCGA	5 cut(s)	91, 111, 181, 208, 234
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	249
TauI	GCSGC	4 cut(s)	8, 98, 227, 247
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	59
TseI	GCWGC	1 cut(s)	200
TspGWI	ACGGA	3 cut(s)	19, 56, 322
TspRI	CASTG	1 cut(s)	59
XagI	CCTNNNNNAGG	1 cut(s)	128
XhoI	CTCGAG	2 cut(s)	90, 233
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.